RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Yeats2Q3TUF7 1407 aa20.46■□□□□ 0.87
Trim28-201ENSMUST00000005705 Topbp1Q6ZQF0 1515 aa20.46■□□□□ 0.87
Trim28-201ENSMUST00000005705 Ppp1r18Q8BQ30 594 aa20.46■□□□□ 0.87
Trim28-201ENSMUST00000005705 Cc2d1aQ8K1A6 943 aa20.45■□□□□ 0.86
Trim28-201ENSMUST00000005705 Cog6Q8R3I3 657 aa20.45■□□□□ 0.86
Trim28-201ENSMUST00000005705 Rbm25B2RY56 838 aaKnown RBP20.45■□□□□ 0.86
Trim28-201ENSMUST00000005705 Ccar1Q8CH18 1146 aaKnown RBP20.45■□□□□ 0.86
Trim28-201ENSMUST00000005705 Pdcl3Q8BVF2 240 aa20.44■□□□□ 0.86
Trim28-201ENSMUST00000005705 Klhdc4Q921I2 584 aa20.44■□□□□ 0.86
Trim28-201ENSMUST00000005705 Atp2b2Q9R0K7 1198 aa20.44■□□□□ 0.86
Trim28-201ENSMUST00000005705 PalldQ9ET54 1408 aa20.44■□□□□ 0.86
Trim28-201ENSMUST00000005705 Cfap65Q3V0B4 1847 aa20.44■□□□□ 0.86
Trim28-201ENSMUST00000005705 Pdlim2Q8R1G6 349 aa20.44■□□□□ 0.86
Trim28-201ENSMUST00000005705 Myom2Q14BI5 1463 aa20.43■□□□□ 0.86
Trim28-201ENSMUST00000005705 Atp10aO54827 1508 aa20.43■□□□□ 0.86
Trim28-201ENSMUST00000005705 Dmrtc1Q9D9R7 182 aa20.42■□□□□ 0.86
Trim28-201ENSMUST00000005705 Afap1Q80YS6 731 aa20.42■□□□□ 0.86
Trim28-201ENSMUST00000005705 Dip2cE9PWR4 1557 aa20.42■□□□□ 0.86
Trim28-201ENSMUST00000005705 Talpid3E9PV87 1520 aa20.42■□□□□ 0.86
Trim28-201ENSMUST00000005705 Rabep1O35551 862 aa20.42■□□□□ 0.86
Trim28-201ENSMUST00000005705 Uggt1Q6P5E4 1551 aa20.41■□□□□ 0.86
Trim28-201ENSMUST00000005705 IbtkQ6ZPR6 1352 aaKnown RBP20.41■□□□□ 0.86
Trim28-201ENSMUST00000005705 Catsper2A2ARP9 588 aa20.41■□□□□ 0.86
Trim28-201ENSMUST00000005705 Ccdc146E9Q9F7 977 aa20.41■□□□□ 0.86
Trim28-201ENSMUST00000005705 PalmQ9Z0P4 383 aa20.41■□□□□ 0.86
Trim28-201ENSMUST00000005705 Clasp1Q80TV8 1535 aaKnown RBP20.41■□□□□ 0.86
Trim28-201ENSMUST00000005705 Gprasp1Q5U4C1 1347 aa20.41■□□□□ 0.86
Trim28-201ENSMUST00000005705 Depdc5P61460 1591 aa20.41■□□□□ 0.86
Trim28-201ENSMUST00000005705 Slc12a5Q91V14 1138 aa20.41■□□□□ 0.86
Trim28-201ENSMUST00000005705 Myom1Q62234 1667 aaKnown RBP20.4■□□□□ 0.86
Trim28-201ENSMUST00000005705 Slc52a2Q9D8F3 450 aa20.4■□□□□ 0.86
Trim28-201ENSMUST00000005705 Sox12Q04890 314 aa20.39■□□□□ 0.85
Trim28-201ENSMUST00000005705 Scaf11E9PZM7 1456 aaKnown RBP20.39■□□□□ 0.85
Trim28-201ENSMUST00000005705 G3bp1P97855 465 aaKnown RBP20.38■□□□□ 0.85
Trim28-201ENSMUST00000005705 Ssh1Q76I79 1042 aa20.38■□□□□ 0.85
Trim28-201ENSMUST00000005705 InsrP15208 1372 aa20.38■□□□□ 0.85
Trim28-201ENSMUST00000005705 SlkO54988 1233 aa20.37■□□□□ 0.85
Trim28-201ENSMUST00000005705 Cdk19Q8BWD8 501 aa20.37■□□□□ 0.85
Trim28-201ENSMUST00000005705 Skint5A7XUY5 1461 aa20.36■□□□□ 0.85
Trim28-201ENSMUST00000005705 Il4rP16382 810 aa20.36■□□□□ 0.85
Trim28-201ENSMUST00000005705 Map4k4P97820 1233 aaKnown RBP20.36■□□□□ 0.85
Trim28-201ENSMUST00000005705 Paxip1Q6NZQ4 1056 aa20.36■□□□□ 0.85
Trim28-201ENSMUST00000005705 Tfip11Q9ERA6 838 aaKnown RBP20.36■□□□□ 0.85
Trim28-201ENSMUST00000005705 DnmbpQ6TXD4 1580 aa20.36■□□□□ 0.85
Trim28-201ENSMUST00000005705 Prrc2bQ7TPM1 1486 aaKnown RBP20.36■□□□□ 0.85
Trim28-201ENSMUST00000005705 Cabp2Q9JLK4 216 aa20.36■□□□□ 0.85
Trim28-201ENSMUST00000005705 RereQ80TZ9 1558 aa20.35■□□□□ 0.85
Trim28-201ENSMUST00000005705 IbspQ61711 324 aa20.35■□□□□ 0.85
Trim28-201ENSMUST00000005705 Knl1Q66JQ7 1612 aa20.35■□□□□ 0.85
Trim28-201ENSMUST00000005705 Cdc42bpgQ80UW5 1551 aa20.34■□□□□ 0.85
Trim28-201ENSMUST00000005705 CalcaP70160 136 aa20.33■□□□□ 0.85
Trim28-201ENSMUST00000005705 Kif18aQ91WD7 886 aa20.33■□□□□ 0.85
Trim28-201ENSMUST00000005705 AdgbG3UZ78 1657 aa20.33■□□□□ 0.85
Trim28-201ENSMUST00000005705 Nsfl1cQ9CZ44 370 aaKnown RBP20.32■□□□□ 0.84
Trim28-201ENSMUST00000005705 Trpm1Q2TV84 1622 aa20.32■□□□□ 0.84
Trim28-201ENSMUST00000005705 Sipa1l1Q8C0T5 1782 aa20.32■□□□□ 0.84
Trim28-201ENSMUST00000005705 Tbc1d32Q3URV1 1296 aa20.32■□□□□ 0.84
Trim28-201ENSMUST00000005705 Mcm4P49717 862 aa20.32■□□□□ 0.84
Trim28-201ENSMUST00000005705 Gsto1O09131 240 aa20.31■□□□□ 0.84
Trim28-201ENSMUST00000005705 Tnnt1O88346 262 aa20.31■□□□□ 0.84
Trim28-201ENSMUST00000005705 Tmc1Q8R4P5 757 aa20.31■□□□□ 0.84
Trim28-201ENSMUST00000005705 AglF8VPN4 1532 aa20.31■□□□□ 0.84
Trim28-201ENSMUST00000005705 Prdm2A2A7B5 1709 aaKnown RBP20.31■□□□□ 0.84
Trim28-201ENSMUST00000005705 DmtnQ9WV69 405 aa20.31■□□□□ 0.84
Trim28-201ENSMUST00000005705 Znf521Q6KAS7 1311 aa20.3■□□□□ 0.84
Trim28-201ENSMUST00000005705 Ino80Q6ZPV2 1559 aa20.3■□□□□ 0.84
Trim28-201ENSMUST00000005705 Antxr1Q9CZ52 562 aa20.3■□□□□ 0.84
Trim28-201ENSMUST00000005705 Tecpr2Q3UH45 1423 aa20.29■□□□□ 0.84
Trim28-201ENSMUST00000005705 MpripP97434 1024 aa20.29■□□□□ 0.84
Trim28-201ENSMUST00000005705 Akap12Q9WTQ5 1684 aa20.29■□□□□ 0.84
Trim28-201ENSMUST00000005705 Triml2E9PW10 424 aa20.29■□□□□ 0.84
Trim28-201ENSMUST00000005705 Mroh1E0CZ22 1640 aa20.29■□□□□ 0.84
Trim28-201ENSMUST00000005705 CastP51125 788 aa20.29■□□□□ 0.84
Trim28-201ENSMUST00000005705 Usp16Q99LG0 825 aa20.29■□□□□ 0.84
Trim28-201ENSMUST00000005705 NinlQ6ZQ12 1394 aa20.28■□□□□ 0.84
Trim28-201ENSMUST00000005705 Gtf2a1Q99PM3 378 aa20.28■□□□□ 0.84
Trim28-201ENSMUST00000005705 Nek4Q9Z1J2 792 aa20.27■□□□□ 0.84
Trim28-201ENSMUST00000005705 Smarca5Q91ZW3 1051 aaKnown RBP20.27■□□□□ 0.84
Trim28-201ENSMUST00000005705 Cep170bQ80U49 1574 aa20.27■□□□□ 0.84
Trim28-201ENSMUST00000005705 Terf2O35144 541 aa20.27■□□□□ 0.83
Trim28-201ENSMUST00000005705 Txndc2Q6P902 515 aa20.26■□□□□ 0.83
Trim28-201ENSMUST00000005705 Q3UPC7 1272 aa20.26■□□□□ 0.83
Trim28-201ENSMUST00000005705 Aifm3Q3TY86 605 aa20.25■□□□□ 0.83
Trim28-201ENSMUST00000005705 Zmym3Q9JLM4 1370 aa20.25■□□□□ 0.83
Trim28-201ENSMUST00000005705 MaddQ80U28 1577 aa20.25■□□□□ 0.83
Trim28-201ENSMUST00000005705 Snap23O09044 210 aa20.24■□□□□ 0.83
Trim28-201ENSMUST00000005705 Plekhm2Q80TQ5 1018 aa20.23■□□□□ 0.83
Trim28-201ENSMUST00000005705 Trim44Q9QXA7 346 aa20.23■□□□□ 0.83
Trim28-201ENSMUST00000005705 Plxnc1Q9QZC2 1574 aa20.23■□□□□ 0.83
Trim28-201ENSMUST00000005705 Cul9Q80TT8 1865 aa20.23■□□□□ 0.83
Trim28-201ENSMUST00000005705 Map7O88735 730 aa20.23■□□□□ 0.83
Trim28-201ENSMUST00000005705 Atl3Q91YH5 541 aa20.23■□□□□ 0.83
Trim28-201ENSMUST00000005705 Ggnbp2Q5SV77 696 aa20.23■□□□□ 0.83
Trim28-201ENSMUST00000005705 Cavin4A2AMM0 362 aa20.22■□□□□ 0.83
Trim28-201ENSMUST00000005705 Phf14Q9D4H9 881 aa20.22■□□□□ 0.83
Trim28-201ENSMUST00000005705 Chrna2Q91X60 512 aa20.22■□□□□ 0.83
Trim28-201ENSMUST00000005705 Hfm1D3Z4R1 1434 aa20.21■□□□□ 0.83
Trim28-201ENSMUST00000005705 Kif2cQ922S8 721 aa20.21■□□□□ 0.83
Trim28-201ENSMUST00000005705 Cdc37l1Q9CZP7 335 aa20.21■□□□□ 0.83
Trim28-201ENSMUST00000005705 Phlpp2Q8BXA7 1320 aa20.2■□□□□ 0.82
Retrieved 100 of 22,080 RNA–protein pairs in 68.5 ms