RNA–Protein interactions for RNA: snR54

snR54, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR54, Length 86 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR54	snR54	SKP1	P52286	194 aa		5.19	□□□□□ -1.58
snR54	snR54	TDA6	Q06466	467 aa		5.19	□□□□□ -1.58
snR54	snR54	SUB2	Q07478	446 aa	Known RBP	5.19	□□□□□ -1.58
snR54	snR54	PUS1	Q12211	544 aa	Known RBP	5.19	□□□□□ -1.58
snR54	snR54	VMA3	P25515	160 aa		5.18	□□□□□ -1.58
snR54	snR54	KNS1	P32350	737 aa	Predicted RBP	5.18	□□□□□ -1.58
snR54	snR54	NAB2	P32505	525 aa	Known RBP RIP-Chip data	5.18	□□□□□ -1.58	not detected
snR54	snR54	ISC10	P32645	267 aa		5.18	□□□□□ -1.58
snR54	snR54	YNR014W	P53719	212 aa		5.18	□□□□□ -1.58
snR54	snR54	YNR040W	P53736	256 aa		5.18	□□□□□ -1.58
snR54	snR54	MTC5	Q03897	1148 aa		5.18	□□□□□ -1.58
snR54	snR54	PUF6	Q04373	656 aa	Known RBP	5.18	□□□□□ -1.58
snR54	snR54	RPP1A	P05318	106 aa	Predicted RBP	5.17	□□□□□ -1.58
snR54	snR54	CWC15	Q03772	175 aa	Known RBP	5.17	□□□□□ -1.58
snR54	snR54	SRS2	P12954	1174 aa		5.16	□□□□□ -1.58
snR54	snR54	NCL1	P38205	684 aa	Known RBP	5.16	□□□□□ -1.58
snR54	snR54	BSD2	P38356	321 aa		5.16	□□□□□ -1.58
snR54	snR54	APM2	P38700	605 aa		5.16	□□□□□ -1.58
snR54	snR54	PRK1	P40494	810 aa		5.16	□□□□□ -1.58
snR54	snR54	BOI2	P39969	1040 aa		5.15	□□□□□ -1.59
snR54	snR54	HEH2	Q03281	663 aa		5.15	□□□□□ -1.59
snR54	snR54	DYS1	P38791	387 aa		5.14	□□□□□ -1.59
snR54	snR54	ITC1	P53125	1264 aa		5.14	□□□□□ -1.59
snR54	snR54	PNP1	Q05788	311 aa		5.14	□□□□□ -1.59
snR54	snR54	YPR053C	Q6Q5F3	151 aa		5.14	□□□□□ -1.59
snR54	snR54	LSB3	P43603	459 aa	Known RBP	5.13	□□□□□ -1.59
snR54	snR54	YOR296W	Q08748	1289 aa		5.13	□□□□□ -1.59
snR54	snR54	MRP10	O75012	95 aa		5.12	□□□□□ -1.59
snR54	snR54	IDI1	P15496	288 aa		5.12	□□□□□ -1.59
snR54	snR54	BOI1	P38041	980 aa	Known RBP	5.12	□□□□□ -1.59
snR54	snR54	LDH1	P38139	375 aa		5.12	□□□□□ -1.59
snR54	snR54	YMR187C	Q03236	431 aa		5.12	□□□□□ -1.59
snR54	snR54	KTR2	P33550	425 aa		5.11	□□□□□ -1.59
snR54	snR54	MET1	P36150	593 aa		5.11	□□□□□ -1.59
snR54	snR54	GIP1	P38229	639 aa		5.11	□□□□□ -1.59
snR54	snR54	MCX1	P38323	520 aa	Predicted RBP	5.11	□□□□□ -1.59
snR54	snR54	RPB10	P22139	70 aa		5.1	□□□□□ -1.59
snR54	snR54	MSN1	P22148	382 aa		5.1	□□□□□ -1.59
snR54	snR54	YCK2	P23292	546 aa	Known RBP	5.1	□□□□□ -1.59
snR54	snR54	PGM2	P37012	569 aa	Known RBP	5.1	□□□□□ -1.59
snR54	snR54	ALG14	P38242	237 aa		5.1	□□□□□ -1.59
snR54	snR54	BOL3	P39724	118 aa		5.1	□□□□□ -1.59
snR54	snR54	NAR1	P23503	491 aa	Known RBP	5.09	□□□□□ -1.59
snR54	snR54	SLN1	P39928	1220 aa	Predicted RBP	5.09	□□□□□ -1.59
snR54	snR54	SUT1	P53032	299 aa	Known RBP	5.09	□□□□□ -1.59
snR54	snR54	YDR215C	Q12240	137 aa		5.09	□□□□□ -1.59
snR54	snR54	ISW1	P38144	1129 aa		5.08	□□□□□ -1.6
snR54	snR54	SKN7	P38889	622 aa		5.08	□□□□□ -1.6
snR54	snR54	YER156C	P40093	338 aa	Known RBP	5.08	□□□□□ -1.6
snR54	snR54	CCT8	P47079	568 aa	Known RBP	5.08	□□□□□ -1.6
snR54	snR54	GIS4	Q04233	774 aa		5.08	□□□□□ -1.6
snR54	snR54	RRN6	P32786	894 aa		5.07	□□□□□ -1.6
snR54	snR54	HXT8	P40886	569 aa		5.07	□□□□□ -1.6
snR54	snR54	PRY1	P47032	299 aa		5.07	□□□□□ -1.6
snR54	snR54	NHA1	Q99271	985 aa		5.07	□□□□□ -1.6
snR54	snR54	GLT1	Q12680	2145 aa	Known RBP	5.06	□□□□□ -1.6
snR54	snR54	FUR4	P05316	633 aa	Known RBP	5.06	□□□□□ -1.6
snR54	snR54	RPL34A	P87262	121 aa	Predicted RBP	5.06	□□□□□ -1.6
snR54	snR54	MCA1	Q08601	432 aa		5.06	□□□□□ -1.6
snR54	snR54	APC11	Q12157	165 aa		5.06	□□□□□ -1.6
snR54	snR54	YIL165C	P40446	119 aa		5.05	□□□□□ -1.6
snR54	snR54	RGD2	P43556	714 aa		5.05	□□□□□ -1.6
snR54	snR54	YJL181W	P46987	611 aa		5.05	□□□□□ -1.6
snR54	snR54	PPT1	P53043	513 aa		5.05	□□□□□ -1.6
snR54	snR54	EMG1	Q06287	252 aa	Known RBP	5.05	□□□□□ -1.6
snR54	snR54	LSO1	Q3E827	93 aa		5.05	□□□□□ -1.6
snR54	snR54	FIR1	P40020	876 aa		5.04	□□□□□ -1.6
snR54	snR54	SSA1	P10591	642 aa	Known RBP	5.03	□□□□□ -1.6
snR54	snR54	KAR5	Q04746	504 aa		5.03	□□□□□ -1.6
snR54	snR54	GAS5	Q08193	484 aa		5.03	□□□□□ -1.6
snR54	snR54	TAT1	P38085	619 aa		5.02	□□□□□ -1.61
snR54	snR54	BUD9	P53226	547 aa		5.02	□□□□□ -1.61
snR54	snR54	TIF6	Q12522	245 aa	Known RBP	5.02	□□□□□ -1.61
snR54	snR54	GLO3	P38682	493 aa	Known RBP	5.01	□□□□□ -1.61
snR54	snR54	RRM3	P38766	723 aa		5.01	□□□□□ -1.61
snR54	snR54	AIM46	P38885	310 aa		5.01	□□□□□ -1.61
snR54	snR54	RAD55	P38953	406 aa		5.01	□□□□□ -1.61
snR54	snR54	TED1	P40533	473 aa		5.01	□□□□□ -1.61
snR54	snR54	AMN1	P38285	549 aa	Predicted RBP	5	□□□□□ -1.61
snR54	snR54	NTA1	P40354	457 aa		5	□□□□□ -1.61
snR54	snR54	SOK2	P53438	785 aa	Predicted RBP	5	□□□□□ -1.61
snR54	snR54	RSC2	Q06488	889 aa		5	□□□□□ -1.61
snR54	snR54	TFA2	P36145	328 aa		4.99	□□□□□ -1.61
snR54	snR54	QDR1	P40475	563 aa		4.99	□□□□□ -1.61
snR54	snR54	SMC1	P32908	1225 aa		4.98	□□□□□ -1.61
snR54	snR54	GIP2	P40036	548 aa		4.98	□□□□□ -1.61
snR54	snR54	PSY2	P40164	858 aa		4.98	□□□□□ -1.61
snR54	snR54	INP51	P40559	946 aa	Known RBP	4.98	□□□□□ -1.61
snR54	snR54	ALD3	P54114	506 aa		4.98	□□□□□ -1.61
snR54	snR54	IRS4	P36115	615 aa	Known RBP	4.97	□□□□□ -1.61
snR54	snR54	LSB6	P42951	607 aa		4.97	□□□□□ -1.61
snR54	snR54	SLP1	Q12232	587 aa		4.97	□□□□□ -1.61
snR54	snR54	TY4B-P	A0A0B7P3V8	1104 aa		4.96	□□□□□ -1.62
snR54	snR54	AI3	P03877	415 aa		4.96	□□□□□ -1.62
snR54	snR54	SBP1	P10080	294 aa	Known RBP	4.96	□□□□□ -1.62
snR54	snR54	FUS1	P11710	512 aa		4.96	□□□□□ -1.62
snR54	snR54	GEF1	P37020	779 aa		4.96	□□□□□ -1.62
snR54	snR54	YBR287W	P38355	427 aa		4.96	□□□□□ -1.62
snR54	snR54	BIO5	P53744	561 aa	Known RBP	4.96	□□□□□ -1.62
snR54	snR54	TY4A-H	Q6Q5P6	413 aa		4.96	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 38.7 ms