RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	RSM7	P47150	247 aa		4.66	□□□□□ -1.66
USA1	YML029W	PEX21	P50091	288 aa		4.66	□□□□□ -1.66
USA1	YML029W	RRG1	Q12167	365 aa	Predicted RBP	4.66	□□□□□ -1.66
USA1	YML029W	RAD50	P12753	1312 aa		4.66	□□□□□ -1.66
USA1	YML029W	FAS2	P19097	1887 aa	Known RBP	4.66	□□□□□ -1.66
USA1	YML029W	FCP1	Q03254	732 aa		4.66	□□□□□ -1.66
USA1	YML029W	YPR148C	Q06523	435 aa		4.66	□□□□□ -1.66
USA1	YML029W	THI3	Q07471	609 aa		4.66	□□□□□ -1.66
USA1	YML029W	DUR1,2	P32528	1835 aa	Known RBP	4.65	□□□□□ -1.66
USA1	YML029W	RET1	P22276	1149 aa	Known RBP	4.65	□□□□□ -1.66
USA1	YML029W	RTG2	P32608	588 aa	Known RBP	4.65	□□□□□ -1.66
USA1	YML029W	YGL242C	P53066	181 aa		4.65	□□□□□ -1.66
USA1	YML029W	PDR18	P53756	1333 aa		4.65	□□□□□ -1.67
USA1	YML029W	SEC18	P18759	758 aa	Known RBP	4.65	□□□□□ -1.67
USA1	YML029W	RAM2	P29703	316 aa		4.65	□□□□□ -1.67
USA1	YML029W	NGR1	P32831	672 aa	Known RBP	4.65	□□□□□ -1.67
USA1	YML029W	NMD2	P38798	1089 aa	Known RBP	4.65	□□□□□ -1.67
USA1	YML029W	TIM50	Q02776	476 aa		4.65	□□□□□ -1.67
USA1	YML029W	PRP42	Q03776	544 aa	Known RBP	4.65	□□□□□ -1.67
USA1	YML029W	BRE1	Q07457	700 aa	Known RBP	4.65	□□□□□ -1.67
USA1	YML029W	TYW1	Q08960	810 aa	Known RBP	4.65	□□□□□ -1.67
USA1	YML029W	ICL1	P28240	557 aa	Predicted RBP	4.64	□□□□□ -1.67
USA1	YML029W	SPL2	P38839	148 aa		4.64	□□□□□ -1.67
USA1	YML029W	WRS1	Q12109	432 aa	Known RBP	4.64	□□□□□ -1.67
USA1	YML029W	OPI1	P21957	404 aa		4.64	□□□□□ -1.67
USA1	YML029W	GLO3	P38682	493 aa	Known RBP	4.64	□□□□□ -1.67
USA1	YML029W	YFH7	P43591	353 aa		4.64	□□□□□ -1.67
USA1	YML029W	IOC3	P43596	787 aa		4.64	□□□□□ -1.67
USA1	YML029W	JJJ2	P46997	583 aa		4.64	□□□□□ -1.67
USA1	YML029W	YLR278C	Q05854	1341 aa		4.63	□□□□□ -1.67
USA1	YML029W	TPM1	P17536	199 aa	Known RBP	4.63	□□□□□ -1.67
USA1	YML029W	LCB1	P25045	558 aa	Known RBP	4.63	□□□□□ -1.67
USA1	YML029W	ECM21	P38167	1117 aa	Known RBP	4.63	□□□□□ -1.67
USA1	YML029W	MSH4	P40965	878 aa	Predicted RBP	4.63	□□□□□ -1.67
USA1	YML029W	VPS70	P47161	811 aa		4.63	□□□□□ -1.67
USA1	YML029W	ENP2	P48234	707 aa	Known RBP	4.63	□□□□□ -1.67
USA1	YML029W	RPT4	P53549	437 aa	Known RBP	4.63	□□□□□ -1.67
USA1	YML029W	NOT3	P06102	836 aa	Known RBP	4.63	□□□□□ -1.67
USA1	YML029W	ARG82	P07250	355 aa		4.63	□□□□□ -1.67
USA1	YML029W	HXT10	P43581	546 aa		4.62	□□□□□ -1.67
USA1	YML029W	SQS1	P53866	767 aa	Known RBP	4.62	□□□□□ -1.67
USA1	YML029W	RRI2	Q12348	645 aa		4.62	□□□□□ -1.67
USA1	YML029W	RPC31	P17890	251 aa		4.62	□□□□□ -1.67
USA1	YML029W	HAL5	P38970	855 aa	Known RBP	4.62	□□□□□ -1.67
USA1	YML029W	YJL171C	P46992	396 aa		4.62	□□□□□ -1.67
USA1	YML029W	YGR117C	P53270	476 aa		4.62	□□□□□ -1.67
USA1	YML029W	IRC4	Q03036	179 aa		4.62	□□□□□ -1.67
USA1	YML029W	GAL2	P13181	574 aa		4.61	□□□□□ -1.67
USA1	YML029W	SLI15	P38283	698 aa		4.61	□□□□□ -1.67
USA1	YML029W	APL6	P46682	809 aa		4.61	□□□□□ -1.67
USA1	YML029W	PUS5	Q06244	254 aa		4.61	□□□□□ -1.67
USA1	YML029W	PCL8	Q08966	492 aa		4.61	□□□□□ -1.67
USA1	YML029W	RFC1	P38630	861 aa	Known RBP	4.61	□□□□□ -1.67
USA1	YML029W	BDP1	P46678	594 aa		4.61	□□□□□ -1.67
USA1	YML029W	NKP2	Q06162	153 aa		4.61	□□□□□ -1.67
USA1	YML029W	KIN1	P13185	1064 aa		4.6	□□□□□ -1.67
USA1	YML029W	KTR1	P27810	393 aa	Known RBP	4.6	□□□□□ -1.67
USA1	YML029W	EMP47	P43555	445 aa		4.6	□□□□□ -1.67
USA1	YML029W	TAH18	Q12181	623 aa		4.6	□□□□□ -1.67
USA1	YML029W	TOP1	P04786	769 aa		4.6	□□□□□ -1.67
USA1	YML029W	CAF20	P12962	161 aa	Known RBP	4.6	□□□□□ -1.67
USA1	YML029W	BOI1	P38041	980 aa	Known RBP	4.6	□□□□□ -1.67
USA1	YML029W	SSF2	Q12153	453 aa	Predicted RBP	4.6	□□□□□ -1.67
USA1	YML029W	SNF3	P10870	884 aa		4.59	□□□□□ -1.67
USA1	YML029W	DSF2	P38213	736 aa		4.59	□□□□□ -1.67
USA1	YML029W	RRT6	P53117	311 aa	Predicted RBP	4.59	□□□□□ -1.67
USA1	YML029W	YNL193W	P53870	558 aa		4.59	□□□□□ -1.67
USA1	YML029W	ALO1	P54783	526 aa	Known RBP	4.59	□□□□□ -1.67
USA1	YML029W	PEA2	P40091	420 aa		4.58	□□□□□ -1.68
USA1	YML029W	EPS1	P40557	701 aa		4.58	□□□□□ -1.68
USA1	YML029W	BBC1	P47068	1157 aa		4.58	□□□□□ -1.68
USA1	YML029W	PIP2	P52960	996 aa		4.58	□□□□□ -1.68
USA1	YML029W	SNU71	P53207	620 aa	Known RBP	4.58	□□□□□ -1.68
USA1	YML029W	CWC15	Q03772	175 aa	Known RBP	4.58	□□□□□ -1.68
USA1	YML029W	KAR5	Q04746	504 aa		4.58	□□□□□ -1.68
USA1	YML029W	CLF1	Q12309	687 aa	Predicted RBP	4.58	□□□□□ -1.68
USA1	YML029W	SLA1	P32790	1244 aa		4.58	□□□□□ -1.68
USA1	YML029W	AFG2	P32794	780 aa		4.58	□□□□□ -1.68
USA1	YML029W	PBY1	P38254	753 aa		4.58	□□□□□ -1.68
USA1	YML029W	SET4	P42948	560 aa		4.58	□□□□□ -1.68
USA1	YML029W	PUS6	P53294	404 aa		4.58	□□□□□ -1.68
USA1	YML029W	RPN7	Q06103	429 aa	Known RBP	4.58	□□□□□ -1.68
USA1	YML029W	TSR3	Q12094	313 aa	Known RBP	4.58	□□□□□ -1.68
USA1	YML029W	MPH3	P0CE00	602 aa		4.57	□□□□□ -1.68
USA1	YML029W	MET1	P36150	593 aa		4.57	□□□□□ -1.68
USA1	YML029W	KTR3	P38130	404 aa	Predicted RBP	4.57	□□□□□ -1.68
USA1	YML029W	UTP7	P40055	554 aa	Known RBP	4.57	□□□□□ -1.68
USA1	YML029W	FET4	P40988	552 aa		4.57	□□□□□ -1.68
USA1	YML029W	IRC8	P47046	822 aa		4.57	□□□□□ -1.68
USA1	YML029W	YML020W	Q03722	664 aa		4.57	□□□□□ -1.68
USA1	YML029W	INM2	Q05533	292 aa		4.57	□□□□□ -1.68
USA1	YML029W	SEC20	P28791	383 aa		4.57	□□□□□ -1.68
USA1	YML029W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
USA1	YML029W	PTK1	P36002	662 aa	Predicted RBP	4.57	□□□□□ -1.68
USA1	YML029W	RTS1	P38903	757 aa		4.57	□□□□□ -1.68
USA1	YML029W	SPO22	P40511	975 aa		4.57	□□□□□ -1.68
USA1	YML029W	AI2	P03876	854 aa		4.56	□□□□□ -1.68
USA1	YML029W	BSD2	P38356	321 aa		4.56	□□□□□ -1.68
USA1	YML029W	MTC3	P53077	123 aa		4.56	□□□□□ -1.68
USA1	YML029W	TRM44	Q02648	567 aa	Known RBP	4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 11.3 ms