RNA–Protein interactions for RNA: YLR223C

IFH1, Transcript of Coactivator, regulates transcription of ribosomal protein (RP) genes, yeast

Gene IFH1, Length 3,258 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
IFH1	YLR223C	YJL181W	P46987	611 aa		2.69	□□□□□ -1.98
IFH1	YLR223C	SUT1	P53032	299 aa	Known RBP	2.68	□□□□□ -1.98
IFH1	YLR223C	HEH2	Q03281	663 aa		2.68	□□□□□ -1.98
IFH1	YLR223C	TY1A-DR2	Q03964	440 aa	Known RBP	2.68	□□□□□ -1.98
IFH1	YLR223C	DYS1	P38791	387 aa		2.67	□□□□□ -1.98
IFH1	YLR223C	CUS1	Q02554	436 aa	Predicted RBP	2.67	□□□□□ -1.98
IFH1	YLR223C	NGR1	P32831	672 aa	Known RBP	2.67	□□□□□ -1.98
IFH1	YLR223C	YML083C	Q04526	418 aa		2.67	□□□□□ -1.98
IFH1	YLR223C	RPS31	P05759	152 aa	Known RBP	2.67	□□□□□ -1.98
IFH1	YLR223C	PDC5	P16467	563 aa	Known RBP	2.67	□□□□□ -1.98
IFH1	YLR223C	PUP1	P25043	261 aa		2.67	□□□□□ -1.98
IFH1	YLR223C	ALD4	P46367	519 aa	Known RBP	2.67	□□□□□ -1.98
IFH1	YLR223C	FUR4	P05316	633 aa	Known RBP	2.66	□□□□□ -1.98
IFH1	YLR223C	ECM2	P38241	364 aa	Known RBP	2.66	□□□□□ -1.98
IFH1	YLR223C	SPR3	P41901	512 aa		2.66	□□□□□ -1.98
IFH1	YLR223C	NHA1	Q99271	985 aa		2.66	□□□□□ -1.98
IFH1	YLR223C	PUF6	Q04373	656 aa	Known RBP	2.66	□□□□□ -1.98
IFH1	YLR223C	UBP1	P25037	809 aa		2.66	□□□□□ -1.98
IFH1	YLR223C	KNS1	P32350	737 aa	Predicted RBP	2.66	□□□□□ -1.98
IFH1	YLR223C	COQ2	P32378	372 aa		2.66	□□□□□ -1.98
IFH1	YLR223C	ALD2	P47771	506 aa		2.66	□□□□□ -1.98
IFH1	YLR223C	SRS2	P12954	1174 aa		2.65	□□□□□ -1.99
IFH1	YLR223C	APM2	P38700	605 aa		2.65	□□□□□ -1.99
IFH1	YLR223C	RSC2	Q06488	889 aa		2.65	□□□□□ -1.99
IFH1	YLR223C	UTP4	Q06679	776 aa	Known RBP	2.65	□□□□□ -1.99
IFH1	YLR223C	VMA3	P25515	160 aa		2.65	□□□□□ -1.99
IFH1	YLR223C	PGM2	P37012	569 aa	Known RBP	2.65	□□□□□ -1.99
IFH1	YLR223C	PNP1	Q05788	311 aa		2.65	□□□□□ -1.99
IFH1	YLR223C	MRPL33	P20084	86 aa		2.64	□□□□□ -1.99
IFH1	YLR223C	PRY1	P47032	299 aa		2.64	□□□□□ -1.99
IFH1	YLR223C	PRK1	P40494	810 aa		2.64	□□□□□ -1.99
IFH1	YLR223C	YBR197C	P38306	217 aa		2.64	□□□□□ -1.99
IFH1	YLR223C	MAC1	P35192	417 aa		2.63	□□□□□ -1.99
IFH1	YLR223C	ISW1	P38144	1129 aa		2.63	□□□□□ -1.99
IFH1	YLR223C	GIP1	P38229	639 aa		2.63	□□□□□ -1.99
IFH1	YLR223C	HXT5	P38695	592 aa		2.63	□□□□□ -1.99
IFH1	YLR223C	SOK2	P53438	785 aa	Predicted RBP	2.63	□□□□□ -1.99
IFH1	YLR223C	KAR5	Q04746	504 aa		2.63	□□□□□ -1.99
IFH1	YLR223C	BSD2	P38356	321 aa		2.63	□□□□□ -1.99
IFH1	YLR223C	PPT1	P53043	513 aa		2.63	□□□□□ -1.99
IFH1	YLR223C	YNR040W	P53736	256 aa		2.63	□□□□□ -1.99
IFH1	YLR223C	MCX1	P38323	520 aa	Predicted RBP	2.62	□□□□□ -1.99
IFH1	YLR223C	RRM3	P38766	723 aa		2.62	□□□□□ -1.99
IFH1	YLR223C	AIM46	P38885	310 aa		2.62	□□□□□ -1.99
IFH1	YLR223C	CAB1	Q04430	367 aa		2.62	□□□□□ -1.99
IFH1	YLR223C	TPS3	P38426	1054 aa	Known RBP	2.62	□□□□□ -1.99
IFH1	YLR223C	SLN1	P39928	1220 aa	Predicted RBP	2.62	□□□□□ -1.99
IFH1	YLR223C	GLO3	P38682	493 aa	Known RBP	2.62	□□□□□ -1.99
IFH1	YLR223C	NEO1	P40527	1151 aa		2.62	□□□□□ -1.99
IFH1	YLR223C	YMR074C	Q04773	145 aa		2.62	□□□□□ -1.99
IFH1	YLR223C	YOR296W	Q08748	1289 aa		2.62	□□□□□ -1.99
IFH1	YLR223C	TED1	P40533	473 aa		2.61	□□□□□ -1.99
IFH1	YLR223C	HXT8	P40886	569 aa		2.61	□□□□□ -1.99
IFH1	YLR223C	YFL066C	P43538	392 aa		2.61	□□□□□ -1.99
IFH1	YLR223C	NOB1	Q08444	459 aa	Known RBP	2.61	□□□□□ -1.99
IFH1	YLR223C	RAD55	P38953	406 aa		2.61	□□□□□ -1.99
IFH1	YLR223C	MCA1	Q08601	432 aa		2.61	□□□□□ -1.99
IFH1	YLR223C	LSB6	P42951	607 aa		2.6	□□□□□ -1.99
IFH1	YLR223C	CCT8	P47079	568 aa	Known RBP	2.6	□□□□□ -1.99
IFH1	YLR223C	SUB2	Q07478	446 aa	Known RBP	2.6	□□□□□ -1.99
IFH1	YLR223C	RSC6	P25632	483 aa		2.6	□□□□□ -1.99
IFH1	YLR223C	SUV3	P32580	737 aa		2.6	□□□□□ -1.99
IFH1	YLR223C	SMC1	P32908	1225 aa		2.6	□□□□□ -1.99
IFH1	YLR223C	GAS5	Q08193	484 aa		2.6	□□□□□ -1.99
IFH1	YLR223C	YDR215C	Q12240	137 aa		2.6	□□□□□ -1.99
IFH1	YLR223C	SAC7	P17121	654 aa		2.59	□□□□□ -1.99
IFH1	YLR223C	MSN1	P22148	382 aa		2.59	□□□□□ -1.99
IFH1	YLR223C	MSC7	P38694	644 aa		2.59	□□□□□ -1.99
IFH1	YLR223C	GIP2	P40036	548 aa		2.59	□□□□□ -1.99
IFH1	YLR223C	NAR1	P23503	491 aa	Known RBP	2.59	□□□□□ -1.99
IFH1	YLR223C	SKP1	P52286	194 aa		2.59	□□□□□ -1.99
IFH1	YLR223C	ITC1	P53125	1264 aa		2.59	□□□□□ -1.99
IFH1	YLR223C	ALO1	P54783	526 aa	Known RBP	2.59	□□□□□ -1.99
IFH1	YLR223C	GIS4	Q04233	774 aa		2.59	□□□□□ -1.99
IFH1	YLR223C	IDI1	P15496	288 aa		2.59	□□□□□ -2
IFH1	YLR223C	AKR1	P39010	764 aa		2.59	□□□□□ -2
IFH1	YLR223C	YPL034W	Q03083	165 aa		2.59	□□□□□ -2
IFH1	YLR223C	SSA1	P10591	642 aa	Known RBP	2.58	□□□□□ -2
IFH1	YLR223C	RPB10	P22139	70 aa		2.58	□□□□□ -2
IFH1	YLR223C	GRS1	P38088	690 aa	Known RBP	2.58	□□□□□ -2
IFH1	YLR223C	OMA1	P36163	345 aa		2.58	□□□□□ -2
IFH1	YLR223C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	2.58	□□□□□ -2	not detected
IFH1	YLR223C	NSI1	Q12457	570 aa		2.58	□□□□□ -2
IFH1	YLR223C	RPC31	P17890	251 aa		2.57	□□□□□ -2
IFH1	YLR223C	LIP5	P32875	414 aa		2.57	□□□□□ -2
IFH1	YLR223C	YCK2	P23292	546 aa	Known RBP	2.57	□□□□□ -2
IFH1	YLR223C	ATG14	P38270	344 aa		2.57	□□□□□ -2
IFH1	YLR223C	YIL165C	P40446	119 aa		2.57	□□□□□ -2
IFH1	YLR223C	MRP10	O75012	95 aa		2.57	□□□□□ -2
IFH1	YLR223C	CDC3	P32457	520 aa	Known RBP	2.57	□□□□□ -2
IFH1	YLR223C	AMN1	P38285	549 aa	Predicted RBP	2.57	□□□□□ -2
IFH1	YLR223C	CWC15	Q03772	175 aa	Known RBP	2.57	□□□□□ -2
IFH1	YLR223C	MAE1	P36013	669 aa	Known RBP	2.56	□□□□□ -2
IFH1	YLR223C	BUD9	P53226	547 aa		2.56	□□□□□ -2
IFH1	YLR223C	YHL008C	P38750	627 aa		2.56	□□□□□ -2
IFH1	YLR223C	SKN7	P38889	622 aa		2.56	□□□□□ -2
IFH1	YLR223C	IRS4	P36115	615 aa	Known RBP	2.55	□□□□□ -2
IFH1	YLR223C	KAE1	P36132	386 aa		2.55	□□□□□ -2
IFH1	YLR223C	QDR1	P40475	563 aa		2.55	□□□□□ -2
IFH1	YLR223C	THI12	P42883	340 aa		2.55	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 8.5 ms