RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeastyeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBA4YHR111W PEA2P40091 420 aa12.45□□□□□ -0.42
UBA4YHR111W SEN54Q02825 467 aaPredicted RBP12.45□□□□□ -0.42
UBA4YHR111W DUR1,2P32528 1835 aaKnown RBP12.44□□□□□ -0.42
UBA4YHR111W ARG82P07250 355 aa12.44□□□□□ -0.42
UBA4YHR111W SLA1P32790 1244 aa12.44□□□□□ -0.42
UBA4YHR111W YIL089WP40500 205 aa12.44□□□□□ -0.42
UBA4YHR111W JJJ2P46997 583 aa12.44□□□□□ -0.42
UBA4YHR111W SPO1P53541 631 aa12.44□□□□□ -0.42
UBA4YHR111W PSF3Q12146 194 aa12.44□□□□□ -0.42
UBA4YHR111W GYP5Q12344 894 aa12.44□□□□□ -0.42
UBA4YHR111W SEC18P18759 758 aaKnown RBP12.43□□□□□ -0.42
UBA4YHR111W SSF1P38789 453 aaPredicted RBP12.43□□□□□ -0.42
UBA4YHR111W HGH1P48362 394 aaKnown RBP12.43□□□□□ -0.42
UBA4YHR111W WRS1Q12109 432 aaKnown RBP12.43□□□□□ -0.42
UBA4YHR111W RPS7AP26786 190 aaKnown RBP12.42□□□□□ -0.42
UBA4YHR111W GCD7P32502 381 aaPredicted RBP12.42□□□□□ -0.42
UBA4YHR111W FUN12P39730 1002 aaKnown RBP12.42□□□□□ -0.42
UBA4YHR111W YCK3P39962 524 aa12.42□□□□□ -0.42
UBA4YHR111W TOM1Q03280 3268 aa12.42□□□□□ -0.42
UBA4YHR111W CWC15Q03772 175 aaKnown RBP12.41□□□□□ -0.42
UBA4YHR111W TFA1P36100 482 aa12.4□□□□□ -0.42
UBA4YHR111W ILV3P39522 585 aaKnown RBP12.4□□□□□ -0.42
UBA4YHR111W ACK1Q07622 623 aaPredicted RBP12.4□□□□□ -0.42
UBA4YHR111W RPT3P33298 428 aaKnown RBP12.39□□□□□ -0.43
UBA4YHR111W YFH7P43591 353 aa12.39□□□□□ -0.43
UBA4YHR111W AI2P03876 854 aa12.38□□□□□ -0.43
UBA4YHR111W CBP1P07252 654 aa12.38□□□□□ -0.43
UBA4YHR111W GLO3P38682 493 aaKnown RBP12.38□□□□□ -0.43
UBA4YHR111W UTP7P40055 554 aaKnown RBP12.38□□□□□ -0.43
UBA4YHR111W ETP1P38748 585 aaKnown RBP12.37□□□□□ -0.43
UBA4YHR111W YNL193WP53870 558 aa12.37□□□□□ -0.43
UBA4YHR111W PUF6Q04373 656 aaKnown RBP12.37□□□□□ -0.43
UBA4YHR111W RRI2Q12348 645 aa12.37□□□□□ -0.43
UBA4YHR111W MTC3P53077 123 aa12.37□□□□□ -0.43
UBA4YHR111W TYW1Q08960 810 aaKnown RBP12.37□□□□□ -0.43
UBA4YHR111W HAL5P38970 855 aaKnown RBP12.36□□□□□ -0.43
UBA4YHR111W YIR042CP40586 236 aa12.36□□□□□ -0.43
UBA4YHR111W POL32P47110 350 aa12.36□□□□□ -0.43
UBA4YHR111W RPN7Q06103 429 aaKnown RBP12.36□□□□□ -0.43
UBA4YHR111W NCB2Q92317 146 aa12.36□□□□□ -0.43
UBA4YHR111W PIF1P07271 859 aa12.35□□□□□ -0.43
UBA4YHR111W YJL171CP46992 396 aa12.35□□□□□ -0.43
UBA4YHR111W PUS6P53294 404 aa12.35□□□□□ -0.43
UBA4YHR111W INM2Q05533 292 aa12.35□□□□□ -0.43
UBA4YHR111W HAA1Q12753 694 aaKnown RBP12.35□□□□□ -0.43
UBA4YHR111W PTK1P36002 662 aaPredicted RBP12.33□□□□□ -0.44
UBA4YHR111W DUS1P53759 423 aaKnown RBP12.33□□□□□ -0.44
UBA4YHR111W PNT1P38969 423 aa12.32□□□□□ -0.44
UBA4YHR111W SNF3P10870 884 aa12.31□□□□□ -0.44
UBA4YHR111W APL6P46682 809 aa12.31□□□□□ -0.44
UBA4YHR111W MDL2P33311 773 aa12.3□□□□□ -0.44
UBA4YHR111W KTR3P38130 404 aaPredicted RBP12.3□□□□□ -0.44
UBA4YHR111W NMD2P38798 1089 aaKnown RBP12.3□□□□□ -0.44
UBA4YHR111W NIT1P40447 199 aa12.3□□□□□ -0.44
UBA4YHR111W YGL242CP53066 181 aa12.3□□□□□ -0.44
UBA4YHR111W RRT6P53117 311 aaPredicted RBP12.3□□□□□ -0.44
UBA4YHR111W TSR3Q12094 313 aaKnown RBP12.3□□□□□ -0.44
UBA4YHR111W CSR2Q12734 1121 aa12.29□□□□□ -0.44
UBA4YHR111W HVG1P0CE11 249 aa12.27□□□□□ -0.45
UBA4YHR111W GAL2P13181 574 aa12.27□□□□□ -0.45
UBA4YHR111W BSD2P38356 321 aa12.27□□□□□ -0.45
UBA4YHR111W BDP1P46678 594 aa12.27□□□□□ -0.45
UBA4YHR111W NOT3P06102 836 aaKnown RBP12.26□□□□□ -0.45
UBA4YHR111W PCS60P38137 543 aaKnown RBP RIP-Chip data12.26□□□□□ -0.45not detected
UBA4YHR111W MLC1P53141 149 aa12.26□□□□□ -0.45
UBA4YHR111W CYB2P00175 591 aa12.25□□□□□ -0.45
UBA4YHR111W BOI1P38041 980 aaKnown RBP12.25□□□□□ -0.45
UBA4YHR111W ALO1P54783 526 aaKnown RBP12.25□□□□□ -0.45
UBA4YHR111W PDR18P53756 1333 aa12.24□□□□□ -0.45
UBA4YHR111W GRX7P38068 203 aa12.24□□□□□ -0.45
UBA4YHR111W NSG2P53898 299 aa12.24□□□□□ -0.45
UBA4YHR111W TIF6Q12522 245 aaKnown RBP12.24□□□□□ -0.45
UBA4YHR111W GSC2P40989 1895 aa12.24□□□□□ -0.45
UBA4YHR111W ECM21P38167 1117 aaKnown RBP12.23□□□□□ -0.45
UBA4YHR111W KEL1P38853 1164 aaKnown RBP12.23□□□□□ -0.45
UBA4YHR111W RAD53P22216 821 aa12.22□□□□□ -0.45
UBA4YHR111W PIP2P52960 996 aa12.22□□□□□ -0.45
UBA4YHR111W FLO1P32768 1537 aa12.21□□□□□ -0.45
UBA4YHR111W ADP1P25371 1049 aa12.21□□□□□ -0.45
UBA4YHR111W CST9Q06032 482 aa12.21□□□□□ -0.45
UBA4YHR111W PMA1P05030 918 aaKnown RBP12.2□□□□□ -0.46
UBA4YHR111W TPS3P38426 1054 aaKnown RBP12.2□□□□□ -0.46
UBA4YHR111W EPS1P40557 701 aa12.2□□□□□ -0.46
UBA4YHR111W SRF1Q12516 437 aa12.2□□□□□ -0.46
UBA4YHR111W PFK2P16862 959 aaKnown RBP RIP-Chip data12.19□□□□□ -0.46not detected
UBA4YHR111W NOP2P40991 618 aaKnown RBP12.19□□□□□ -0.46
UBA4YHR111W PCL8Q08966 492 aa12.19□□□□□ -0.46
UBA4YHR111W GEF1P37020 779 aa12.18□□□□□ -0.46
UBA4YHR111W GIN4Q12263 1142 aa12.18□□□□□ -0.46
UBA4YHR111W NPL4P33755 580 aa12.17□□□□□ -0.46
UBA4YHR111W APE3P37302 537 aaKnown RBP12.17□□□□□ -0.46
UBA4YHR111W RFC1P38630 861 aaKnown RBP12.17□□□□□ -0.46
UBA4YHR111W YMR147WP40218 223 aaKnown RBP12.17□□□□□ -0.46
UBA4YHR111W PPM2Q08282 695 aa12.17□□□□□ -0.46
UBA4YHR111W YBL028CP38202 106 aa12.16□□□□□ -0.46
UBA4YHR111W PBY1P38254 753 aa12.16□□□□□ -0.46
UBA4YHR111W PIB2P53191 635 aa12.16□□□□□ -0.46
UBA4YHR111W PEX29Q03370 554 aa12.16□□□□□ -0.46
UBA4YHR111W RMD1Q03441 430 aa12.16□□□□□ -0.46
UBA4YHR111W RBA50Q04418 439 aa12.16□□□□□ -0.46
Retrieved 100 of 5,963 RNA–protein pairs in 84.2 ms