RNA–Protein interactions for RNA: YDR407C

TRS120, Transcript of Component of transport protein particle (TRAPP) complex II, yeast

Gene TRS120, Length 3,870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRS120	YDR407C	PHO13	P19881	312 aa		4.24	□□□□□ -1.73
TRS120	YDR407C	SRP40	P32583	406 aa	Predicted RBP	4.24	□□□□□ -1.73
TRS120	YDR407C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	not detected
TRS120	YDR407C	RFC1	P38630	861 aa	Known RBP	4.24	□□□□□ -1.73
TRS120	YDR407C	CCT5	P40413	562 aa	Known RBP	4.24	□□□□□ -1.73
TRS120	YDR407C	GEF1	P37020	779 aa		4.23	□□□□□ -1.73
TRS120	YDR407C	ATG32	P40458	529 aa		4.23	□□□□□ -1.73
TRS120	YDR407C	CEP3	P40969	608 aa		4.23	□□□□□ -1.73
TRS120	YDR407C	MDG1	P53885	366 aa		4.23	□□□□□ -1.73
TRS120	YDR407C	PPM2	Q08282	695 aa		4.23	□□□□□ -1.73
TRS120	YDR407C	IES2	P40154	320 aa		4.23	□□□□□ -1.73
TRS120	YDR407C	PGI1	P12709	554 aa	Known RBP	4.23	□□□□□ -1.73
TRS120	YDR407C	RDS1	P25611	832 aa		4.23	□□□□□ -1.73
TRS120	YDR407C	MYO3	P36006	1272 aa		4.23	□□□□□ -1.73
TRS120	YDR407C	MEC3	Q02574	474 aa		4.23	□□□□□ -1.73
TRS120	YDR407C	SEC18	P18759	758 aa	Known RBP	4.22	□□□□□ -1.73
TRS120	YDR407C	MPH3	P0CE00	602 aa		4.22	□□□□□ -1.73
TRS120	YDR407C	CAB3	P36076	571 aa		4.22	□□□□□ -1.73
TRS120	YDR407C	RSM25	P40496	264 aa		4.22	□□□□□ -1.73
TRS120	YDR407C	BIK1	P11709	440 aa		4.22	□□□□□ -1.73
TRS120	YDR407C	GRX1	P25373	110 aa	Known RBP	4.22	□□□□□ -1.73
TRS120	YDR407C	HXT1	P32465	570 aa		4.22	□□□□□ -1.73
TRS120	YDR407C	RMT2	Q03305	412 aa		4.22	□□□□□ -1.73
TRS120	YDR407C	NYV1	Q12255	253 aa		4.22	□□□□□ -1.73
TRS120	YDR407C	YOL087C	Q99247	1116 aa		4.22	□□□□□ -1.73
TRS120	YDR407C	MCM4	P30665	933 aa	Known RBP	4.21	□□□□□ -1.73
TRS120	YDR407C	THI6	P41835	540 aa		4.21	□□□□□ -1.73
TRS120	YDR407C	CTF18	P49956	741 aa		4.21	□□□□□ -1.73
TRS120	YDR407C	AI2	P03876	854 aa		4.21	□□□□□ -1.74
TRS120	YDR407C	RPL19A	P0CX82	189 aa	Known RBP	4.21	□□□□□ -1.74
TRS120	YDR407C	RPL19B	P0CX83	189 aa	Predicted RBP	4.21	□□□□□ -1.74
TRS120	YDR407C	GSY2	P27472	705 aa		4.21	□□□□□ -1.74
TRS120	YDR407C	ASF1	P32447	279 aa		4.21	□□□□□ -1.74
TRS120	YDR407C	MAL13	P53338	473 aa		4.21	□□□□□ -1.74
TRS120	YDR407C	MRPL10	P36520	322 aa		4.21	□□□□□ -1.74
TRS120	YDR407C	ALF1	P53904	254 aa		4.21	□□□□□ -1.74
TRS120	YDR407C	TAH18	Q12181	623 aa		4.21	□□□□□ -1.74
TRS120	YDR407C	PTC5	Q12511	572 aa		4.21	□□□□□ -1.74
TRS120	YDR407C	TTI1	P36097	1038 aa		4.21	□□□□□ -1.74
TRS120	YDR407C	DAK2	P43550	591 aa		4.21	□□□□□ -1.74
TRS120	YDR407C	UBP10	P53874	792 aa	Predicted RBP	4.21	□□□□□ -1.74
TRS120	YDR407C	COG4	Q06096	861 aa		4.21	□□□□□ -1.74
TRS120	YDR407C	BMH1	P29311	267 aa	Known RBP	4.2	□□□□□ -1.74
TRS120	YDR407C	APL2	P36000	726 aa	Predicted RBP	4.2	□□□□□ -1.74
TRS120	YDR407C	LEO1	P38439	464 aa		4.2	□□□□□ -1.74
TRS120	YDR407C	CRG1	P38892	291 aa	RIP-Chip data	4.2	□□□□□ -1.74	not detected
TRS120	YDR407C	VPS8	P39702	1274 aa		4.2	□□□□□ -1.74
TRS120	YDR407C	ALD2	P47771	506 aa		4.2	□□□□□ -1.74
TRS120	YDR407C	DCS2	Q12123	353 aa		4.2	□□□□□ -1.74
TRS120	YDR407C	RMP1	Q12530	201 aa		4.2	□□□□□ -1.74
TRS120	YDR407C	CYB2	P00175	591 aa		4.2	□□□□□ -1.74
TRS120	YDR407C	VAS1	P07806	1104 aa	Known RBP	4.2	□□□□□ -1.74
TRS120	YDR407C	SPO11	P23179	398 aa		4.2	□□□□□ -1.74
TRS120	YDR407C	PRP45	P28004	379 aa	Predicted RBP	4.2	□□□□□ -1.74
TRS120	YDR407C	MVP1	P40959	511 aa	Known RBP	4.2	□□□□□ -1.74
TRS120	YDR407C	APC11	Q12157	165 aa		4.2	□□□□□ -1.74
TRS120	YDR407C	GPA1	P08539	472 aa		4.2	□□□□□ -1.74
TRS120	YDR407C	RPN7	Q06103	429 aa	Known RBP	4.2	□□□□□ -1.74
TRS120	YDR407C	NOP14	Q99207	810 aa	Known RBP	4.2	□□□□□ -1.74
TRS120	YDR407C	URA1	P28272	314 aa	Predicted RBP	4.19	□□□□□ -1.74
TRS120	YDR407C	BCD1	P38772	366 aa		4.19	□□□□□ -1.74
TRS120	YDR407C	DOT5	P40553	215 aa		4.19	□□□□□ -1.74
TRS120	YDR407C	UBR2	Q07963	1872 aa		4.19	□□□□□ -1.74
TRS120	YDR407C	SNF3	P10870	884 aa		4.19	□□□□□ -1.74
TRS120	YDR407C	PEP3	P27801	918 aa		4.19	□□□□□ -1.74
TRS120	YDR407C	NUP133	P36161	1157 aa		4.19	□□□□□ -1.74
TRS120	YDR407C	YHL050C	P38721	697 aa		4.19	□□□□□ -1.74
TRS120	YDR407C	BOP3	P53958	396 aa		4.19	□□□□□ -1.74
TRS120	YDR407C	FRK1	Q03002	865 aa	Predicted RBP	4.19	□□□□□ -1.74
TRS120	YDR407C	SCJ1	P25303	377 aa		4.18	□□□□□ -1.74
TRS120	YDR407C	YGL082W	P53155	381 aa		4.18	□□□□□ -1.74
TRS120	YDR407C	MYO5	Q04439	1219 aa	Known RBP	4.18	□□□□□ -1.74
TRS120	YDR407C	ETT1	Q08421	412 aa	Known RBP	4.18	□□□□□ -1.74
TRS120	YDR407C	ENV9	Q08651	330 aa		4.18	□□□□□ -1.74
TRS120	YDR407C	FYV10	P40492	516 aa		4.18	□□□□□ -1.74
TRS120	YDR407C	VTC3	Q02725	835 aa		4.18	□□□□□ -1.74
TRS120	YDR407C	HOS3	Q02959	697 aa	Known RBP	4.18	□□□□□ -1.74
TRS120	YDR407C	FCP1	Q03254	732 aa		4.18	□□□□□ -1.74
TRS120	YDR407C	CTI6	Q08923	506 aa		4.18	□□□□□ -1.74
TRS120	YDR407C	AIP1	P46680	615 aa	Known RBP	4.18	□□□□□ -1.74
TRS120	YDR407C	WAR1	Q03631	944 aa		4.18	□□□□□ -1.74
TRS120	YDR407C	NEW1	Q08972	1196 aa	Known RBP	4.18	□□□□□ -1.74
TRS120	YDR407C	PIF1	P07271	859 aa		4.17	□□□□□ -1.74
TRS120	YDR407C	SEC23	P15303	768 aa	Known RBP	4.17	□□□□□ -1.74
TRS120	YDR407C	TPS3	P38426	1054 aa	Known RBP	4.17	□□□□□ -1.74
TRS120	YDR407C	FLO11	P08640	1367 aa		4.17	□□□□□ -1.74
TRS120	YDR407C	SPC110	P32380	944 aa		4.17	□□□□□ -1.74
TRS120	YDR407C	YBR287W	P38355	427 aa		4.17	□□□□□ -1.74
TRS120	YDR407C	SPL2	P38839	148 aa		4.17	□□□□□ -1.74
TRS120	YDR407C	BUD16	P39988	312 aa		4.17	□□□□□ -1.74
TRS120	YDR407C	SRP54	P20424	541 aa	Known RBP	4.17	□□□□□ -1.74
TRS120	YDR407C	HIR1	P32479	840 aa		4.17	□□□□□ -1.74
TRS120	YDR407C	IOC3	P43596	787 aa		4.17	□□□□□ -1.74
TRS120	YDR407C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
TRS120	YDR407C	ALG1	P16661	449 aa		4.16	□□□□□ -1.74
TRS120	YDR407C	MIF2	P35201	549 aa		4.16	□□□□□ -1.74
TRS120	YDR407C	HFM1	P51979	1187 aa		4.16	□□□□□ -1.74
TRS120	YDR407C	YGL138C	P53122	345 aa		4.16	□□□□□ -1.74
TRS120	YDR407C	ALD3	P54114	506 aa		4.16	□□□□□ -1.74
TRS120	YDR407C	LCB1	P25045	558 aa	Known RBP	4.16	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 27.7 ms