RNA–Protein interactions for RNA: YDR311W

TFB1, Transcript of Subunit of TFIIH and nucleotide excision repair factor 3 complexes, yeast

Gene TFB1, Length 1,929 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB1	YDR311W	YBR197C	P38306	217 aa		3.91	□□□□□ -1.78
TFB1	YDR311W	SCW11	P53189	542 aa		3.91	□□□□□ -1.78
TFB1	YDR311W	CAF120	P53836	1060 aa		3.91	□□□□□ -1.78
TFB1	YDR311W	UBP2	Q01476	1272 aa		3.91	□□□□□ -1.78
TFB1	YDR311W	TCB1	Q12466	1186 aa		3.91	□□□□□ -1.78
TFB1	YDR311W	NMD2	P38798	1089 aa	Known RBP	3.91	□□□□□ -1.78
TFB1	YDR311W	YFL034W	P43564	1073 aa		3.91	□□□□□ -1.78
TFB1	YDR311W	IOC3	P43596	787 aa		3.91	□□□□□ -1.78
TFB1	YDR311W	CYT1	P07143	309 aa		3.9	□□□□□ -1.78
TFB1	YDR311W	SWI5	P08153	709 aa		3.9	□□□□□ -1.78
TFB1	YDR311W	RPS6A	P0CX37	236 aa	Known RBP	3.9	□□□□□ -1.78
TFB1	YDR311W	RPS6B	P0CX38	236 aa	Predicted RBP	3.9	□□□□□ -1.78
TFB1	YDR311W	RPB10	P22139	70 aa		3.9	□□□□□ -1.78
TFB1	YDR311W	ISC10	P32645	267 aa		3.9	□□□□□ -1.78
TFB1	YDR311W	YIR007W	P40566	764 aa		3.9	□□□□□ -1.78
TFB1	YDR311W	VPS16	Q03308	798 aa		3.9	□□□□□ -1.78
TFB1	YDR311W	CAB1	Q04430	367 aa		3.9	□□□□□ -1.78
TFB1	YDR311W	SPT2	P06843	333 aa	Predicted RBP	3.89	□□□□□ -1.79
TFB1	YDR311W	KTR2	P33550	425 aa		3.89	□□□□□ -1.79
TFB1	YDR311W	RPS26A	P39938	119 aa	Known RBP	3.89	□□□□□ -1.79
TFB1	YDR311W	RPS26B	P39939	119 aa	Known RBP	3.89	□□□□□ -1.79
TFB1	YDR311W	SPR3	P41901	512 aa		3.89	□□□□□ -1.79
TFB1	YDR311W	FOX2	Q02207	900 aa	Known RBP	3.89	□□□□□ -1.79
TFB1	YDR311W	SRP40	P32583	406 aa	Predicted RBP	3.89	□□□□□ -1.79
TFB1	YDR311W	OSH7	P38755	437 aa		3.89	□□□□□ -1.79
TFB1	YDR311W	CWH41	P53008	833 aa		3.89	□□□□□ -1.79
TFB1	YDR311W	TOS4	Q06266	489 aa		3.89	□□□□□ -1.79
TFB1	YDR311W	PIN2	Q12057	282 aa		3.89	□□□□□ -1.79
TFB1	YDR311W	APC11	Q12157	165 aa		3.89	□□□□□ -1.79
TFB1	YDR311W	CIT2	P08679	460 aa		3.88	□□□□□ -1.79
TFB1	YDR311W	PPG1	P32838	368 aa		3.88	□□□□□ -1.79
TFB1	YDR311W	MAD1	P40957	749 aa		3.88	□□□□□ -1.79
TFB1	YDR311W	MTO1	P53070	669 aa		3.88	□□□□□ -1.79
TFB1	YDR311W	SSF2	Q12153	453 aa	Predicted RBP	3.88	□□□□□ -1.79
TFB1	YDR311W	PEP7	P32609	515 aa		3.87	□□□□□ -1.79
TFB1	YDR311W	WTM2	Q12206	467 aa		3.87	□□□□□ -1.79
TFB1	YDR311W	DAL1	P32375	460 aa		3.87	□□□□□ -1.79
TFB1	YDR311W	YKL091C	P33324	310 aa	Known RBP	3.87	□□□□□ -1.79
TFB1	YDR311W	ATG36	P46983	293 aa		3.87	□□□□□ -1.79
TFB1	YDR311W	VTC4	P47075	721 aa		3.87	□□□□□ -1.79
TFB1	YDR311W	SUT1	P53032	299 aa	Known RBP	3.87	□□□□□ -1.79
TFB1	YDR311W	CDC19	P00549	500 aa	Known RBP	3.86	□□□□□ -1.79
TFB1	YDR311W	UFD2	P54860	961 aa		3.86	□□□□□ -1.79
TFB1	YDR311W	TY1A-MR1	Q04215	440 aa		3.86	□□□□□ -1.79
TFB1	YDR311W	CCP1	P00431	361 aa		3.85	□□□□□ -1.79
TFB1	YDR311W	RPP2B	P02400	110 aa	Known RBP	3.85	□□□□□ -1.79
TFB1	YDR311W	DAT1	P13483	248 aa	Known RBP	3.85	□□□□□ -1.79
TFB1	YDR311W	CYC8	P14922	966 aa		3.85	□□□□□ -1.79
TFB1	YDR311W	UTR2	P32623	467 aa		3.85	□□□□□ -1.79
TFB1	YDR311W	SSN3	P39073	555 aa		3.85	□□□□□ -1.79
TFB1	YDR311W	ROG3	P43602	733 aa		3.85	□□□□□ -1.79
TFB1	YDR311W	YNL011C	P53980	444 aa		3.85	□□□□□ -1.79
TFB1	YDR311W	NAM8	Q00539	523 aa	Known RBP	3.85	□□□□□ -1.79
TFB1	YDR311W	WRS1	Q12109	432 aa	Known RBP	3.85	□□□□□ -1.79
TFB1	YDR311W	GCD6	P32501	712 aa	Known RBP	3.85	□□□□□ -1.79
TFB1	YDR311W	HXT5	P38695	592 aa		3.85	□□□□□ -1.79
TFB1	YDR311W	DLD3	P39976	496 aa	Known RBP	3.85	□□□□□ -1.79
TFB1	YDR311W	CDC55	Q00362	526 aa		3.85	□□□□□ -1.79
TFB1	YDR311W	NSE3	Q05541	303 aa		3.85	□□□□□ -1.79
TFB1	YDR311W	CLN2	P20438	545 aa		3.84	□□□□□ -1.79
TFB1	YDR311W	BUD6	P41697	788 aa		3.84	□□□□□ -1.79
TFB1	YDR311W	YGR122W	P53272	402 aa		3.84	□□□□□ -1.79
TFB1	YDR311W	ALG12	P53730	551 aa		3.84	□□□□□ -1.79
TFB1	YDR311W	RMD1	Q03441	430 aa		3.84	□□□□□ -1.79
TFB1	YDR311W	HPF1	Q05164	967 aa		3.84	□□□□□ -1.79
TFB1	YDR311W	MRPL33	P20084	86 aa		3.83	□□□□□ -1.8
TFB1	YDR311W	SLA1	P32790	1244 aa		3.83	□□□□□ -1.8
TFB1	YDR311W	VPS35	P34110	944 aa		3.83	□□□□□ -1.8
TFB1	YDR311W	TAT2	P38967	592 aa		3.83	□□□□□ -1.8
TFB1	YDR311W	RPN4	Q03465	531 aa		3.83	□□□□□ -1.8
TFB1	YDR311W	CDC53	Q12018	815 aa	Known RBP	3.83	□□□□□ -1.8
TFB1	YDR311W	PET112	P33893	541 aa		3.83	□□□□□ -1.8
TFB1	YDR311W	FAA3	P39002	694 aa		3.83	□□□□□ -1.8
TFB1	YDR311W	MSN5	P52918	1224 aa		3.83	□□□□□ -1.8
TFB1	YDR311W	ESF1	Q06344	628 aa	Known RBP	3.83	□□□□□ -1.8
TFB1	YDR311W	RAD2	P07276	1031 aa		3.82	□□□□□ -1.8
TFB1	YDR311W	GRX1	P25373	110 aa	Known RBP	3.82	□□□□□ -1.8
TFB1	YDR311W	TBS1	P38114	1094 aa		3.82	□□□□□ -1.8
TFB1	YDR311W	UTP7	P40055	554 aa	Known RBP	3.82	□□□□□ -1.8
TFB1	YDR311W	YJR008W	P47085	338 aa		3.82	□□□□□ -1.8
TFB1	YDR311W	SAM37	P50110	327 aa		3.82	□□□□□ -1.8
TFB1	YDR311W	YGR035C	P53222	116 aa		3.82	□□□□□ -1.8
TFB1	YDR311W	CWC24	P53769	259 aa		3.82	□□□□□ -1.8
TFB1	YDR311W	BDF2	Q07442	638 aa		3.82	□□□□□ -1.8
TFB1	YDR311W	HXK1	P04806	485 aa	Known RBP	3.82	□□□□□ -1.8
TFB1	YDR311W	STI1	P15705	589 aa	Known RBP RIP-Chip data	3.82	□□□□□ -1.8	not detected
TFB1	YDR311W	TRK2	P28584	889 aa		3.82	□□□□□ -1.8
TFB1	YDR311W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	3.82	□□□□□ -1.8	not detected
TFB1	YDR311W	SUM1	P46676	1062 aa		3.82	□□□□□ -1.8
TFB1	YDR311W	YPQ2	Q06328	317 aa		3.82	□□□□□ -1.8
TFB1	YDR311W	NOC3	Q07896	663 aa	Predicted RBP	3.82	□□□□□ -1.8
TFB1	YDR311W	OXR1	Q08952	273 aa		3.82	□□□□□ -1.8
TFB1	YDR311W	TY1A-DR3	Q12441	440 aa		3.82	□□□□□ -1.8
TFB1	YDR311W	TSR4	P25040	408 aa		3.81	□□□□□ -1.8
TFB1	YDR311W	VMA3	P25515	160 aa		3.81	□□□□□ -1.8
TFB1	YDR311W	MNR2	P35724	969 aa		3.81	□□□□□ -1.8
TFB1	YDR311W	RRP14	P36080	434 aa	Known RBP	3.81	□□□□□ -1.8
TFB1	YDR311W	HXT8	P40886	569 aa		3.81	□□□□□ -1.8
TFB1	YDR311W	OSW7	P43611	510 aa		3.81	□□□□□ -1.8
TFB1	YDR311W	YJL049W	P47048	450 aa		3.81	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms