RNA–Protein interactions for RNA: YDL231C

BRE4, Transcript of Zinc finger protein containing five transmembrane domains, yeast

Gene BRE4, Length 3,378 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BRE4	YDL231C	NPA3	P47122	385 aa		4.88	□□□□□ -1.63
BRE4	YDL231C	MRD1	Q06106	887 aa	Known RBP	4.88	□□□□□ -1.63
BRE4	YDL231C	BDF2	Q07442	638 aa		4.88	□□□□□ -1.63
BRE4	YDL231C	EDE1	P34216	1381 aa		4.88	□□□□□ -1.63
BRE4	YDL231C	HSP82	P02829	709 aa	Known RBP	4.88	□□□□□ -1.63
BRE4	YDL231C	RPT4	P53549	437 aa	Known RBP	4.88	□□□□□ -1.63
BRE4	YDL231C	INM2	Q05533	292 aa		4.88	□□□□□ -1.63
BRE4	YDL231C	APC11	Q12157	165 aa		4.88	□□□□□ -1.63
BRE4	YDL231C	RIM15	P43565	1770 aa		4.88	□□□□□ -1.63
BRE4	YDL231C	ACE2	P21192	770 aa		4.88	□□□□□ -1.63
BRE4	YDL231C	EBP2	P36049	427 aa	Known RBP	4.88	□□□□□ -1.63
BRE4	YDL231C	CTF18	P49956	741 aa		4.88	□□□□□ -1.63
BRE4	YDL231C	NPR2	P39923	615 aa		4.87	□□□□□ -1.63
BRE4	YDL231C	PEX14	P53112	341 aa		4.87	□□□□□ -1.63
BRE4	YDL231C	NYV1	Q12255	253 aa		4.87	□□□□□ -1.63
BRE4	YDL231C	SSA2	P10592	639 aa	Known RBP	4.87	□□□□□ -1.63
BRE4	YDL231C	KTR1	P27810	393 aa	Known RBP	4.87	□□□□□ -1.63
BRE4	YDL231C	ATG36	P46983	293 aa		4.87	□□□□□ -1.63
BRE4	YDL231C	UBP16	Q02863	499 aa		4.87	□□□□□ -1.63
BRE4	YDL231C	PHM7	Q12252	991 aa		4.87	□□□□□ -1.63
BRE4	YDL231C	HAT1	Q12341	374 aa		4.87	□□□□□ -1.63
BRE4	YDL231C	HO	P09932	586 aa		4.87	□□□□□ -1.63
BRE4	YDL231C	RPL19A	P0CX82	189 aa	Known RBP	4.87	□□□□□ -1.63
BRE4	YDL231C	RPL19B	P0CX83	189 aa	Predicted RBP	4.87	□□□□□ -1.63
BRE4	YDL231C	NOC2	P39744	710 aa	Known RBP	4.87	□□□□□ -1.63
BRE4	YDL231C	BUD6	P41697	788 aa		4.87	□□□□□ -1.63
BRE4	YDL231C	MGM1	P32266	881 aa		4.86	□□□□□ -1.63
BRE4	YDL231C	GLN1	P32288	370 aa	Known RBP	4.86	□□□□□ -1.63
BRE4	YDL231C	SWE1	P32944	819 aa		4.86	□□□□□ -1.63
BRE4	YDL231C	YLR271W	Q06152	274 aa		4.86	□□□□□ -1.63
BRE4	YDL231C	GYP5	Q12344	894 aa		4.86	□□□□□ -1.63
BRE4	YDL231C	TPM1	P17536	199 aa	Known RBP	4.86	□□□□□ -1.63
BRE4	YDL231C	KTR3	P38130	404 aa	Predicted RBP	4.86	□□□□□ -1.63
BRE4	YDL231C	YBL086C	P38177	466 aa		4.86	□□□□□ -1.63
BRE4	YDL231C	ROX1	P25042	368 aa		4.85	□□□□□ -1.63
BRE4	YDL231C	SAC6	P32599	642 aa	Known RBP	4.85	□□□□□ -1.63
BRE4	YDL231C	JJJ2	P46997	583 aa		4.85	□□□□□ -1.63
BRE4	YDL231C	ALD2	P47771	506 aa		4.85	□□□□□ -1.63
BRE4	YDL231C	ALD3	P54114	506 aa		4.85	□□□□□ -1.63
BRE4	YDL231C	SGD1	Q06132	899 aa		4.85	□□□□□ -1.63
BRE4	YDL231C	ROM2	P51862	1356 aa	Known RBP	4.85	□□□□□ -1.63
BRE4	YDL231C	GCD7	P32502	381 aa	Predicted RBP	4.85	□□□□□ -1.63
BRE4	YDL231C	AAP1	P37898	856 aa	Known RBP	4.85	□□□□□ -1.63
BRE4	YDL231C	UGA2	P38067	497 aa		4.85	□□□□□ -1.63
BRE4	YDL231C	PIL1	P53252	339 aa	Known RBP	4.85	□□□□□ -1.63
BRE4	YDL231C	YMR074C	Q04773	145 aa		4.85	□□□□□ -1.63
BRE4	YDL231C	RGP1	P16664	663 aa		4.85	□□□□□ -1.63
BRE4	YDL231C	OSW7	P43611	510 aa		4.85	□□□□□ -1.63
BRE4	YDL231C	MSN5	P52918	1224 aa		4.85	□□□□□ -1.63
BRE4	YDL231C	RSC1	P53236	928 aa		4.85	□□□□□ -1.63
BRE4	YDL231C	RAT1	Q02792	1006 aa	Known RBP	4.85	□□□□□ -1.63
BRE4	YDL231C	TRS33	Q99394	268 aa		4.85	□□□□□ -1.63
BRE4	YDL231C	RFC5	P38251	354 aa		4.84	□□□□□ -1.63
BRE4	YDL231C	TFC8	Q12308	588 aa		4.84	□□□□□ -1.63
BRE4	YDL231C	SES1	P07284	462 aa	Known RBP	4.84	□□□□□ -1.63
BRE4	YDL231C	ICL1	P28240	557 aa	Predicted RBP	4.84	□□□□□ -1.63
BRE4	YDL231C	PTK1	P36002	662 aa	Predicted RBP	4.84	□□□□□ -1.63
BRE4	YDL231C	SNF7	P39929	240 aa	Known RBP	4.84	□□□□□ -1.63
BRE4	YDL231C	SMD2	Q06217	110 aa	Known RBP	4.84	□□□□□ -1.63
BRE4	YDL231C	DPH6	Q12429	685 aa		4.84	□□□□□ -1.63
BRE4	YDL231C	MSP1	P28737	362 aa		4.84	□□□□□ -1.64
BRE4	YDL231C	MIC60	P36112	540 aa		4.83	□□□□□ -1.64
BRE4	YDL231C	IRC8	P47046	822 aa		4.83	□□□□□ -1.64
BRE4	YDL231C	YKE2	P52553	114 aa		4.83	□□□□□ -1.64
BRE4	YDL231C	YML020W	Q03722	664 aa		4.83	□□□□□ -1.64
BRE4	YDL231C	AIM7	Q12156	149 aa		4.83	□□□□□ -1.64
BRE4	YDL231C	UTP10	P42945	1769 aa	Known RBP	4.82	□□□□□ -1.64
BRE4	YDL231C	PRX1	P34227	261 aa	Known RBP	4.82	□□□□□ -1.64
BRE4	YDL231C	GRX7	P38068	203 aa		4.82	□□□□□ -1.64
BRE4	YDL231C	RSM7	P47150	247 aa		4.82	□□□□□ -1.64
BRE4	YDL231C	UFD2	P54860	961 aa		4.82	□□□□□ -1.64
BRE4	YDL231C	EIS1	Q05050	843 aa	Known RBP	4.82	□□□□□ -1.64
BRE4	YDL231C	SVF1	Q05515	481 aa		4.82	□□□□□ -1.64
BRE4	YDL231C	CSC1	Q06538	782 aa		4.82	□□□□□ -1.64
BRE4	YDL231C	PSR2	Q07949	397 aa		4.82	□□□□□ -1.64
BRE4	YDL231C	SMY1	P32364	656 aa	Known RBP	4.82	□□□□□ -1.64
BRE4	YDL231C	CWC22	P53333	577 aa	Known RBP	4.82	□□□□□ -1.64
BRE4	YDL231C	IRC4	Q03036	179 aa		4.82	□□□□□ -1.64
BRE4	YDL231C	TOS4	Q06266	489 aa		4.82	□□□□□ -1.64
BRE4	YDL231C	TRL1	P09880	827 aa	Known RBP	4.81	□□□□□ -1.64
BRE4	YDL231C	RSM25	P40496	264 aa		4.81	□□□□□ -1.64
BRE4	YDL231C	RPS0B	P46654	252 aa	Known RBP	4.81	□□□□□ -1.64
BRE4	YDL231C	EAF6	P47128	113 aa		4.81	□□□□□ -1.64
BRE4	YDL231C	GIS4	Q04233	774 aa		4.81	□□□□□ -1.64
BRE4	YDL231C	CDC16	P09798	840 aa		4.81	□□□□□ -1.64
BRE4	YDL231C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
BRE4	YDL231C	RVS167	P39743	482 aa	Known RBP	4.81	□□□□□ -1.64
BRE4	YDL231C	TIF4632	P39936	914 aa	Known RBP	4.81	□□□□□ -1.64
BRE4	YDL231C	PIP2	P52960	996 aa		4.81	□□□□□ -1.64
BRE4	YDL231C	SQS1	P53866	767 aa	Known RBP	4.81	□□□□□ -1.64
BRE4	YDL231C	RKM4	Q12504	494 aa		4.81	□□□□□ -1.64
BRE4	YDL231C	CPA2	P03965	1118 aa	Known RBP	4.81	□□□□□ -1.64
BRE4	YDL231C	CHO2	P05374	869 aa	Known RBP	4.81	□□□□□ -1.64
BRE4	YDL231C	PEP3	P27801	918 aa		4.81	□□□□□ -1.64
BRE4	YDL231C	VPS8	P39702	1274 aa		4.81	□□□□□ -1.64
BRE4	YDL231C	HDA1	P53973	706 aa		4.81	□□□□□ -1.64
BRE4	YDL231C	MET1	P36150	593 aa		4.8	□□□□□ -1.64
BRE4	YDL231C	BOI1	P38041	980 aa	Known RBP	4.8	□□□□□ -1.64
BRE4	YDL231C	MGA2	P40578	1113 aa		4.8	□□□□□ -1.64
BRE4	YDL231C	NBL1	Q3E7Y6	73 aa		4.8	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 7.2 ms