RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 DYNC1I1O14576 645 aa8.65□□□□□ -1.02
SCN1A-213ENST00000636759 PER1O15534 1290 aaPredicted RBP8.65□□□□□ -1.02
SCN1A-213ENST00000636759 PKD2Q13563 968 aa8.65□□□□□ -1.02
SCN1A-213ENST00000636759 TRAPPC8Q9Y2L5 1435 aa8.65□□□□□ -1.03
SCN1A-213ENST00000636759 ZC3H13Q5T200 1668 aaKnown RBP8.64□□□□□ -1.03
SCN1A-213ENST00000636759 C8orf34Q49A92 452 aa8.64□□□□□ -1.03
SCN1A-213ENST00000636759 CENPQQ7L2Z9 268 aaPredicted RBP8.64□□□□□ -1.03
SCN1A-213ENST00000636759 TEX2Q8IWB9 1127 aa8.64□□□□□ -1.03
SCN1A-213ENST00000636759 UPF2Q9HAU5 1272 aaKnown RBP8.64□□□□□ -1.03
SCN1A-213ENST00000636759 ZSCAN20P17040 1043 aaPredicted RBP8.63□□□□□ -1.03
SCN1A-213ENST00000636759 IRX3P78415 501 aaPredicted RBP8.63□□□□□ -1.03
SCN1A-213ENST00000636759 CCDC173Q0VFZ6 552 aa8.63□□□□□ -1.03
SCN1A-213ENST00000636759 CRBNQ96SW2 442 aa8.63□□□□□ -1.03
SCN1A-213ENST00000636759 MROH1Q8NDA8 1641 aa8.63□□□□□ -1.03
SCN1A-213ENST00000636759 DDX11L8A8MPP1 907 aa8.62□□□□□ -1.03
SCN1A-213ENST00000636759 MYO3AQ8NEV4 1616 aa8.62□□□□□ -1.03
SCN1A-213ENST00000636759 SYNMO15061 1565 aa8.62□□□□□ -1.03
SCN1A-213ENST00000636759 CFAP74Q9C0B2 1584 aa8.62□□□□□ -1.03
SCN1A-213ENST00000636759 ASXL2Q76L83 1435 aa8.62□□□□□ -1.03
SCN1A-213ENST00000636759 CLTCL1P53675 1640 aa8.62□□□□□ -1.03
SCN1A-213ENST00000636759 KIDINS220Q9ULH0 1771 aa8.62□□□□□ -1.03
SCN1A-213ENST00000636759 EFCAB2Q5VUJ9 269 aa8.61□□□□□ -1.03
SCN1A-213ENST00000636759 POLR3GLQ9BT43 218 aa8.61□□□□□ -1.03
SCN1A-213ENST00000636759 CGNQ9P2M7 1197 aaKnown RBP8.61□□□□□ -1.03
SCN1A-213ENST00000636759 ATP7AQ04656 1500 aa8.61□□□□□ -1.03
SCN1A-213ENST00000636759 FANCAO15360 1455 aa8.61□□□□□ -1.03
SCN1A-213ENST00000636759 TET3O43151 1660 aa8.61□□□□□ -1.03
SCN1A-213ENST00000636759 CSPP1Q1MSJ5 1256 aa8.61□□□□□ -1.03
SCN1A-213ENST00000636759 TESK2Q96S53 571 aa8.61□□□□□ -1.03
SCN1A-213ENST00000636759 SHPRHQ149N8 1683 aa8.6□□□□□ -1.03
SCN1A-213ENST00000636759 DISP3Q9P2K9 1392 aa8.6□□□□□ -1.03
SCN1A-213ENST00000636759 SECISBP2LQ93073 1101 aaKnown RBP8.6□□□□□ -1.03
SCN1A-213ENST00000636759 TRPM2O94759 1503 aa8.6□□□□□ -1.03
SCN1A-213ENST00000636759 PLIN1O60240 522 aa8.6□□□□□ -1.03
SCN1A-213ENST00000636759 CHMP4AQ9BY43 222 aa8.6□□□□□ -1.03
SCN1A-213ENST00000636759 CBX1P83916 185 aa8.6□□□□□ -1.03
SCN1A-213ENST00000636759 PDE3BQ13370 1112 aa8.59□□□□□ -1.03
SCN1A-213ENST00000636759 MAPK8IP2Q13387 824 aaPredicted RBP8.59□□□□□ -1.03
SCN1A-213ENST00000636759 MROH2AA6NES4 1674 aa8.59□□□□□ -1.03
SCN1A-213ENST00000636759 MYBBP1AQ9BQG0 1328 aaKnown RBP8.59□□□□□ -1.03
SCN1A-213ENST00000636759 SPRYD3Q8NCJ5 442 aa8.59□□□□□ -1.03
SCN1A-213ENST00000636759 CHMP5Q9NZZ3 219 aa8.59□□□□□ -1.03
SCN1A-213ENST00000636759 E9PSI1 815 aa8.58□□□□□ -1.04
SCN1A-213ENST00000636759 PTPRTO14522 1441 aa8.58□□□□□ -1.04
SCN1A-213ENST00000636759 NASPP49321 788 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-213ENST00000636759 ZNF771Q7L3S4 317 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-213ENST00000636759 OSCARQ8IYS5 282 aa8.58□□□□□ -1.04
SCN1A-213ENST00000636759 ST20-MTHFSA0A0A6YYL1 179 aa8.58□□□□□ -1.04
SCN1A-213ENST00000636759 SASS6Q6UVJ0 657 aa8.58□□□□□ -1.04
SCN1A-213ENST00000636759 ANTXR1Q9H6X2 564 aa8.57□□□□□ -1.04
SCN1A-213ENST00000636759 ADGRL1O94910 1474 aa8.57□□□□□ -1.04
SCN1A-213ENST00000636759 ABCA6Q8N139 1617 aa8.56□□□□□ -1.04
SCN1A-213ENST00000636759 MAP3K4Q9Y6R4 1608 aa8.56□□□□□ -1.04
SCN1A-213ENST00000636759 LMTK2Q8IWU2 1503 aa8.56□□□□□ -1.04
SCN1A-213ENST00000636759 CCDC144AA2RUR9 1427 aa8.56□□□□□ -1.04
SCN1A-213ENST00000636759 XPCQ01831 940 aaPredicted RBP8.56□□□□□ -1.04
SCN1A-213ENST00000636759 DNAJC2Q99543 621 aaKnown RBP8.56□□□□□ -1.04
SCN1A-213ENST00000636759 ZNF521Q96K83 1311 aa8.55□□□□□ -1.04
SCN1A-213ENST00000636759 VGFO15240 615 aaPredicted RBP8.55□□□□□ -1.04
SCN1A-213ENST00000636759 RALBP1Q15311 655 aa8.55□□□□□ -1.04
SCN1A-213ENST00000636759 SKOR2Q2VWA4 1001 aaPredicted RBP8.55□□□□□ -1.04
SCN1A-213ENST00000636759 FRMPD1Q5SYB0 1578 aa8.55□□□□□ -1.04
SCN1A-213ENST00000636759 KDM5AP29375 1690 aaKnown RBP8.55□□□□□ -1.04
SCN1A-213ENST00000636759 PTMSP20962 102 aa8.54□□□□□ -1.04
SCN1A-213ENST00000636759 PPP1R9BQ96SB3 815 aa8.54□□□□□ -1.04
SCN1A-213ENST00000636759 ZNF518AQ6AHZ1 1483 aa8.54□□□□□ -1.04
SCN1A-213ENST00000636759 KDM2BQ8NHM5 1336 aa8.54□□□□□ -1.04
SCN1A-213ENST00000636759 ZBTB22O15209 634 aa8.54□□□□□ -1.04
SCN1A-213ENST00000636759 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.54□□□□□ -1.04
SCN1A-213ENST00000636759 SCAPERQ9BY12 1400 aa8.54□□□□□ -1.04
SCN1A-213ENST00000636759 KCNJ4P48050 445 aa8.54□□□□□ -1.04
SCN1A-213ENST00000636759 NBPF1Q3BBV0 1214 aa8.54□□□□□ -1.04
SCN1A-213ENST00000636759 AEBP1Q8IUX7 1158 aa8.54□□□□□ -1.04
SCN1A-213ENST00000636759 RGS22Q8NE09 1264 aa8.54□□□□□ -1.04
SCN1A-213ENST00000636759 GBP4Q96PP9 640 aa8.54□□□□□ -1.04
SCN1A-213ENST00000636759 TBC1D2Q9BYX2 928 aa8.54□□□□□ -1.04
SCN1A-213ENST00000636759 GLI2P10070 1586 aa8.54□□□□□ -1.04
SCN1A-213ENST00000636759 SPAG9O60271 1321 aaKnown RBP8.54□□□□□ -1.04
SCN1A-213ENST00000636759 MLH3Q9UHC1 1453 aa8.53□□□□□ -1.04
SCN1A-213ENST00000636759 NRXN1Q9ULB1 1477 aa8.53□□□□□ -1.04
SCN1A-213ENST00000636759 HECW2Q9P2P5 1572 aa8.53□□□□□ -1.04
SCN1A-213ENST00000636759 APPP05067 770 aa8.53□□□□□ -1.04
SCN1A-213ENST00000636759 HS1BP3Q53T59 392 aa8.53□□□□□ -1.04
SCN1A-213ENST00000636759 AFAP1Q8N556 730 aa8.53□□□□□ -1.04
SCN1A-213ENST00000636759 PPRC1Q5VV67 1664 aaKnown RBP8.53□□□□□ -1.04
SCN1A-213ENST00000636759 RICTORQ6R327 1708 aa8.53□□□□□ -1.04
SCN1A-213ENST00000636759 EFCAB6Q5THR3 1501 aa8.53□□□□□ -1.04
SCN1A-213ENST00000636759 ZNF500O60304 480 aaPredicted RBP8.53□□□□□ -1.04
SCN1A-213ENST00000636759 CHRM1P11229 460 aaPredicted RBP8.53□□□□□ -1.04
SCN1A-213ENST00000636759 USP32Q8NFA0 1604 aa8.53□□□□□ -1.04
SCN1A-213ENST00000636759 CCDC66A2RUB6 948 aa8.53□□□□□ -1.04
SCN1A-213ENST00000636759 CARD11Q9BXL7 1154 aa8.53□□□□□ -1.04
SCN1A-213ENST00000636759 POGZQ7Z3K3 1410 aa8.53□□□□□ -1.04
SCN1A-213ENST00000636759 PPLO60437 1756 aa8.52□□□□□ -1.05
SCN1A-213ENST00000636759 GAS2L3Q86XJ1 694 aa8.52□□□□□ -1.05
SCN1A-213ENST00000636759 GOLGA6L22H0YM25 854 aa8.52□□□□□ -1.05
SCN1A-213ENST00000636759 NOL7Q9UMY1 257 aaKnown RBP8.52□□□□□ -1.05
SCN1A-213ENST00000636759 NEO1Q92859 1461 aa8.51□□□□□ -1.05
SCN1A-213ENST00000636759 BCCIPQ9P287 314 aaKnown RBP eCLIP8.51□□□□□ -1.05
SCN1A-213ENST00000636759 KIF1BO60333 1816 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms