RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 MRE11P49959 708 aa17.03■□□□□ 0.32
CPSF1-212ENST00000616140 NLRP6P59044 892 aa17.03■□□□□ 0.32
CPSF1-212ENST00000616140 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.03■□□□□ 0.32
CPSF1-212ENST00000616140 SMG6Q86US8 1419 aaKnown RBP17.02■□□□□ 0.32
CPSF1-212ENST00000616140 TIAM1Q13009 1591 aa17.02■□□□□ 0.32
CPSF1-212ENST00000616140 NAIPQ13075 1403 aa17.02■□□□□ 0.32
CPSF1-212ENST00000616140 FAM13BQ9NYF5 915 aa17.02■□□□□ 0.32
CPSF1-212ENST00000616140 AKAP17AQ02040 695 aaKnown RBP17.02■□□□□ 0.31
CPSF1-212ENST00000616140 TWISTNBQ3B726 338 aaPredicted RBP17.02■□□□□ 0.31
CPSF1-212ENST00000616140 VSIG10Q8N0Z9 540 aa17.02■□□□□ 0.31
CPSF1-212ENST00000616140 NOC3LQ8WTT2 800 aaKnown RBP17.02■□□□□ 0.31
CPSF1-212ENST00000616140 BRPF3Q9ULD4 1205 aa17.02■□□□□ 0.31
CPSF1-212ENST00000616140 ARHGAP5Q13017 1502 aa17.02■□□□□ 0.31
CPSF1-212ENST00000616140 FAM69CQ0P6D2 419 aa17.02■□□□□ 0.31
CPSF1-212ENST00000616140 ZNF592Q92610 1267 aa17.02■□□□□ 0.31
CPSF1-212ENST00000616140 C11orf95C9JLR9 678 aaPredicted RBP17.01■□□□□ 0.31
CPSF1-212ENST00000616140 APPP05067 770 aa17.01■□□□□ 0.31
CPSF1-212ENST00000616140 RNF214Q8ND24 703 aa17.01■□□□□ 0.31
CPSF1-212ENST00000616140 PRAM1Q96QH2 718 aa17.01■□□□□ 0.31
CPSF1-212ENST00000616140 ERC2O15083 957 aa17.01■□□□□ 0.31
CPSF1-212ENST00000616140 SYNE3Q6ZMZ3 975 aa17.01■□□□□ 0.31
CPSF1-212ENST00000616140 NEK4P51957 841 aa17■□□□□ 0.31
CPSF1-212ENST00000616140 AIMP1Q12904 312 aaKnown RBP17■□□□□ 0.31
CPSF1-212ENST00000616140 CCAR2Q8N163 923 aaKnown RBP17■□□□□ 0.31
CPSF1-212ENST00000616140 TROQ12816 1431 aaPredicted RBP17■□□□□ 0.31
CPSF1-212ENST00000616140 SURF6O75683 361 aaKnown RBP17■□□□□ 0.31
CPSF1-212ENST00000616140 TPD52L1Q16890 204 aaPredicted RBP17■□□□□ 0.31
CPSF1-212ENST00000616140 NOB1Q9ULX3 412 aaKnown RBP17■□□□□ 0.31
CPSF1-212ENST00000616140 NASPP49321 788 aaPredicted RBP17■□□□□ 0.31
CPSF1-212ENST00000616140 EFCAB5A4FU69 1503 aa16.99■□□□□ 0.31
CPSF1-212ENST00000616140 TMX4Q9H1E5 349 aaPredicted RBP16.99■□□□□ 0.31
CPSF1-212ENST00000616140 SYNJ2O15056 1496 aa16.99■□□□□ 0.31
CPSF1-212ENST00000616140 GNAI3P08754 354 aa16.99■□□□□ 0.31
CPSF1-212ENST00000616140 EVA1CP58658 441 aa16.98■□□□□ 0.31
CPSF1-212ENST00000616140 MARCH6O60337 910 aa16.98■□□□□ 0.31
CPSF1-212ENST00000616140 GOLGA6L1Q8N7Z2 621 aa16.98■□□□□ 0.31
CPSF1-212ENST00000616140 NESP48681 1621 aa16.98■□□□□ 0.31
CPSF1-212ENST00000616140 TNNT3P45378 269 aaPredicted RBP16.98■□□□□ 0.31
CPSF1-212ENST00000616140 RAPGEF4Q8WZA2 1011 aa16.98■□□□□ 0.31
CPSF1-212ENST00000616140 EHBP1L1Q8N3D4 1523 aa16.98■□□□□ 0.31
CPSF1-212ENST00000616140 CLASRPQ8N2M8 674 aaKnown RBP16.98■□□□□ 0.31
CPSF1-212ENST00000616140 TRDNQ13061 729 aa16.97■□□□□ 0.31
CPSF1-212ENST00000616140 ATF7IPQ6VMQ6 1270 aa16.97■□□□□ 0.31
CPSF1-212ENST00000616140 TOP2BQ02880 1626 aa16.97■□□□□ 0.31
CPSF1-212ENST00000616140 CAVIN1Q6NZI2 390 aaKnown RBP16.97■□□□□ 0.31
CPSF1-212ENST00000616140 RIC3Q7Z5B4 369 aa16.97■□□□□ 0.31
CPSF1-212ENST00000616140 TRIM29Q14134 588 aa16.96■□□□□ 0.31
CPSF1-212ENST00000616140 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.96■□□□□ 0.313e-7■■■□□ 15.5
CPSF1-212ENST00000616140 NEUROD6Q96NK8 337 aa16.96■□□□□ 0.31
CPSF1-212ENST00000616140 GCC1Q96CN9 775 aa16.96■□□□□ 0.31
CPSF1-212ENST00000616140 CABP1Q9NZU7 370 aa16.96■□□□□ 0.31
CPSF1-212ENST00000616140 FOSBP53539 338 aa16.96■□□□□ 0.3
CPSF1-212ENST00000616140 DAPK1P53355 1430 aa16.95■□□□□ 0.3
CPSF1-212ENST00000616140 WDR63Q8IWG1 891 aa16.95■□□□□ 0.3
CPSF1-212ENST00000616140 G3V3G9 751 aa16.95■□□□□ 0.3
CPSF1-212ENST00000616140 DCAF8Q5TAQ9 597 aa16.95■□□□□ 0.3
CPSF1-212ENST00000616140 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-212ENST00000616140 IL27Q8NEV9 243 aa16.95■□□□□ 0.3
CPSF1-212ENST00000616140 ERBINQ96RT1 1412 aa16.95■□□□□ 0.3
CPSF1-212ENST00000616140 POLA1P09884 1462 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-212ENST00000616140 TSR1Q2NL82 804 aaKnown RBP16.94■□□□□ 0.3
CPSF1-212ENST00000616140 SASS6Q6UVJ0 657 aa16.94■□□□□ 0.3
CPSF1-212ENST00000616140 NLRP2Q9NX02 1062 aa16.94■□□□□ 0.3
CPSF1-212ENST00000616140 MVPQ14764 893 aaKnown RBP16.94■□□□□ 0.3
CPSF1-212ENST00000616140 NCBP3Q53F19 620 aaKnown RBP16.94■□□□□ 0.3
CPSF1-212ENST00000616140 SULT6B1Q6IMI4 303 aa16.94■□□□□ 0.3
CPSF1-212ENST00000616140 RABEP1Q15276 862 aa16.94■□□□□ 0.3
CPSF1-212ENST00000616140 FBXW7Q969H0 707 aa16.94■□□□□ 0.3
CPSF1-212ENST00000616140 CCDC30Q5VVM6 783 aa16.94■□□□□ 0.3
CPSF1-212ENST00000616140 CCDC73Q6ZRK6 1079 aa16.94■□□□□ 0.3
CPSF1-212ENST00000616140 SCAPERQ9BY12 1400 aa16.93■□□□□ 0.3
CPSF1-212ENST00000616140 SYTL4Q96C24 671 aaPredicted RBP16.93■□□□□ 0.3
CPSF1-212ENST00000616140 SLC4A2P04920 1241 aa16.93■□□□□ 0.3
CPSF1-212ENST00000616140 PDE4CQ08493 712 aa16.93■□□□□ 0.3
CPSF1-212ENST00000616140 GAS2L2Q8NHY3 880 aa16.93■□□□□ 0.3
CPSF1-212ENST00000616140 PRPF40AO75400 957 aaKnown RBP16.92■□□□□ 0.3
CPSF1-212ENST00000616140 TPM1P09493 284 aa16.92■□□□□ 0.3
CPSF1-212ENST00000616140 TXNDC2Q86VQ3 553 aa16.92■□□□□ 0.3
CPSF1-212ENST00000616140 HOMER1Q86YM7 354 aa16.92■□□□□ 0.3
CPSF1-212ENST00000616140 TOPBP1Q92547 1522 aa16.92■□□□□ 0.3
CPSF1-212ENST00000616140 SKAP1Q86WV1 359 aa16.91■□□□□ 0.3
CPSF1-212ENST00000616140 CNTROBQ8N137 903 aa16.91■□□□□ 0.3
CPSF1-212ENST00000616140 MBD3O95983 291 aa16.91■□□□□ 0.3
CPSF1-212ENST00000616140 SLFN5Q08AF3 891 aa16.91■□□□□ 0.3
CPSF1-212ENST00000616140 VPS53Q5VIR6 699 aa16.91■□□□□ 0.3
CPSF1-212ENST00000616140 WWC1Q8IX03 1113 aa16.91■□□□□ 0.3
CPSF1-212ENST00000616140 FSD1Q9BTV5 496 aa16.91■□□□□ 0.3
CPSF1-212ENST00000616140 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-212ENST00000616140 CCDC27Q2M243 656 aa16.91■□□□□ 0.3
CPSF1-212ENST00000616140 CT47B1P0C2W7 299 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-212ENST00000616140 RALYLQ86SE5 291 aaKnown RBP16.9■□□□□ 0.3
CPSF1-212ENST00000616140 ABTB2Q8N961 1025 aa16.9■□□□□ 0.3
CPSF1-212ENST00000616140 CDK19Q9BWU1 502 aa16.9■□□□□ 0.3
CPSF1-212ENST00000616140 GNAI2P04899 355 aa16.9■□□□□ 0.3
CPSF1-212ENST00000616140 NFXL1Q6ZNB6 911 aa16.9■□□□□ 0.3
CPSF1-212ENST00000616140 IFT57Q9NWB7 429 aa16.9■□□□□ 0.3
CPSF1-212ENST00000616140 WASHC4Q2M389 1173 aa16.9■□□□□ 0.3
CPSF1-212ENST00000616140 R3HCC1Q9Y3T6 440 aaKnown RBP16.89■□□□□ 0.29
CPSF1-212ENST00000616140 ANKRD30BQ9BXX2 1392 aa16.89■□□□□ 0.29
CPSF1-212ENST00000616140 MCM2P49736 904 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms