RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ADAMTS13Q76LX8 1427 aa13.85□□□□□ -0.19
TRIM28-208ENST00000597172 EN1Q05925 392 aaPredicted RBP13.85□□□□□ -0.19
TRIM28-208ENST00000597172 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.85□□□□□ -0.19
TRIM28-208ENST00000597172 SOS2Q07890 1332 aaPredicted RBP13.85□□□□□ -0.19
TRIM28-208ENST00000597172 BRWD3Q6RI45 1802 aa13.85□□□□□ -0.19
TRIM28-208ENST00000597172 RALGAPBQ86X10 1494 aa13.84□□□□□ -0.19
TRIM28-208ENST00000597172 NOS1P29475 1434 aa13.83□□□□□ -0.2
TRIM28-208ENST00000597172 KRT27Q7Z3Y8 459 aa13.83□□□□□ -0.2
TRIM28-208ENST00000597172 UNC5CLQ8IV45 518 aa13.83□□□□□ -0.2
TRIM28-208ENST00000597172 IQGAP3Q86VI3 1631 aa13.82□□□□□ -0.2
TRIM28-208ENST00000597172 PTPRUQ92729 1446 aa13.81□□□□□ -0.2
TRIM28-208ENST00000597172 GLI3P10071 1580 aa13.81□□□□□ -0.2
TRIM28-208ENST00000597172 SPHKAPQ2M3C7 1700 aa13.81□□□□□ -0.2
TRIM28-208ENST00000597172 CEP350Q5VT06 3117 aa13.81□□□□□ -0.2
TRIM28-208ENST00000597172 TRPM2O94759 1503 aa13.8□□□□□ -0.2
TRIM28-208ENST00000597172 PPP1R1BQ9UD71 204 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-208ENST00000597172 MYOM2P54296 1465 aa13.79□□□□□ -0.2
TRIM28-208ENST00000597172 LMTK2Q8IWU2 1503 aa13.79□□□□□ -0.2
TRIM28-208ENST00000597172 MYO5BQ9ULV0 1848 aa13.78□□□□□ -0.2
TRIM28-208ENST00000597172 ORAI2Q96SN7 254 aa13.78□□□□□ -0.2
TRIM28-208ENST00000597172 ANKRD30BQ9BXX2 1392 aa13.78□□□□□ -0.2
TRIM28-208ENST00000597172 ONECUT3O60422 494 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-208ENST00000597172 C1orf167Q5SNV9 1468 aa13.77□□□□□ -0.21
TRIM28-208ENST00000597172 SIN3AQ96ST3 1273 aa13.77□□□□□ -0.21
TRIM28-208ENST00000597172 CLSPNQ9HAW4 1339 aa13.77□□□□□ -0.21
TRIM28-208ENST00000597172 COL22A1Q8NFW1 1626 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-208ENST00000597172 CHGAP10645 457 aaKnown RBP13.76□□□□□ -0.21
TRIM28-208ENST00000597172 LAMC1P11047 1609 aa13.75□□□□□ -0.21
TRIM28-208ENST00000597172 ADGRL3Q9HAR2 1447 aa13.75□□□□□ -0.21
TRIM28-208ENST00000597172 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.75□□□□□ -0.21
TRIM28-208ENST00000597172 NINLQ9Y2I6 1382 aa13.74□□□□□ -0.21
TRIM28-208ENST00000597172 MARF1Q9Y4F3 1742 aaKnown RBP13.74□□□□□ -0.21
TRIM28-208ENST00000597172 UTRNP46939 3433 aa13.74□□□□□ -0.21
TRIM28-208ENST00000597172 RPRD2Q5VT52 1461 aaKnown RBP13.74□□□□□ -0.21
TRIM28-208ENST00000597172 E9PCH4 1651 aa13.73□□□□□ -0.21
TRIM28-208ENST00000597172 VPS72Q15906 364 aa13.73□□□□□ -0.21
TRIM28-208ENST00000597172 EZH2Q15910 746 aaKnown RBP13.73□□□□□ -0.21
TRIM28-208ENST00000597172 CCDC9Q9Y3X0 531 aaKnown RBP13.73□□□□□ -0.21
TRIM28-208ENST00000597172 SLIT2O94813 1529 aa13.73□□□□□ -0.21
TRIM28-208ENST00000597172 TMEM131LA2VDJ0 1609 aa13.72□□□□□ -0.21
TRIM28-208ENST00000597172 SPON1Q9HCB6 807 aa13.72□□□□□ -0.21
TRIM28-208ENST00000597172 A0A0G2JS52 829 aa13.71□□□□□ -0.21
TRIM28-208ENST00000597172 MYT1Q01538 1121 aa13.71□□□□□ -0.21
TRIM28-208ENST00000597172 NEUROD1Q13562 356 aa13.71□□□□□ -0.21
TRIM28-208ENST00000597172 XRN1Q8IZH2 1706 aaKnown RBP13.7□□□□□ -0.22
TRIM28-208ENST00000597172 CAMKK2Q96RR4 588 aa13.69□□□□□ -0.22
TRIM28-208ENST00000597172 DISP2A7MBM2 1401 aa13.69□□□□□ -0.22
TRIM28-208ENST00000597172 NPHP3Q7Z494 1330 aa13.68□□□□□ -0.22
TRIM28-208ENST00000597172 KCNQ2O43526 872 aa13.68□□□□□ -0.22
TRIM28-208ENST00000597172 RGPD1P0DJD0 1748 aa13.67□□□□□ -0.22
TRIM28-208ENST00000597172 CAMTA1Q9Y6Y1 1673 aa13.66□□□□□ -0.22
TRIM28-208ENST00000597172 XPCQ01831 940 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-208ENST00000597172 FAM182BQ5T319 152 aa13.66□□□□□ -0.22
TRIM28-208ENST00000597172 NALCNQ8IZF0 1738 aa13.65□□□□□ -0.22
TRIM28-208ENST00000597172 NBPF8Q3BBV2 869 aa13.65□□□□□ -0.22
TRIM28-208ENST00000597172 NBPF14Q5TI25 921 aa13.65□□□□□ -0.22
TRIM28-208ENST00000597172 METP08581 1390 aa13.65□□□□□ -0.22
TRIM28-208ENST00000597172 GIGYF1O75420 1035 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-208ENST00000597172 FAM98CQ17RN3 349 aaKnown RBP13.64□□□□□ -0.23
TRIM28-208ENST00000597172 CCDC144AA2RUR9 1427 aa13.64□□□□□ -0.23
TRIM28-208ENST00000597172 CHD4Q14839 1912 aa13.63□□□□□ -0.23
TRIM28-208ENST00000597172 FOXO3O43524 673 aa13.63□□□□□ -0.23
TRIM28-208ENST00000597172 ESCO1Q5FWF5 840 aa13.63□□□□□ -0.23
TRIM28-208ENST00000597172 PXDNQ92626 1479 aa13.62□□□□□ -0.23
TRIM28-208ENST00000597172 ZEB1P37275 1124 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-208ENST00000597172 CLTCL1P53675 1640 aa13.61□□□□□ -0.23
TRIM28-208ENST00000597172 PARD3Q8TEW0 1356 aa13.61□□□□□ -0.23
TRIM28-208ENST00000597172 APBA3O96018 575 aa13.61□□□□□ -0.23
TRIM28-208ENST00000597172 L3MBTL2Q969R5 705 aa13.61□□□□□ -0.23
TRIM28-208ENST00000597172 TIMELESSQ9UNS1 1208 aa13.61□□□□□ -0.23
TRIM28-208ENST00000597172 TRIM37O94972 964 aa13.6□□□□□ -0.23
TRIM28-208ENST00000597172 HAP1P54257 671 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-208ENST00000597172 SPATA31E1Q6ZUB1 1445 aa13.59□□□□□ -0.23
TRIM28-208ENST00000597172 RGL3Q3MIN7 710 aa13.59□□□□□ -0.23
TRIM28-208ENST00000597172 TNS1Q9HBL0 1735 aaKnown RBP13.59□□□□□ -0.23
TRIM28-208ENST00000597172 NRXN3Q9Y4C0 1643 aa13.58□□□□□ -0.24
TRIM28-208ENST00000597172 LRPPRCP42704 1394 aaKnown RBP13.58□□□□□ -0.24
TRIM28-208ENST00000597172 TONSLQ96HA7 1378 aa13.58□□□□□ -0.24
TRIM28-208ENST00000597172 SPATA31A3Q5VYP0 1347 aa13.57□□□□□ -0.24
TRIM28-208ENST00000597172 USP32Q8NFA0 1604 aa13.57□□□□□ -0.24
TRIM28-208ENST00000597172 FAM196AQ6ZSG2 479 aa13.56□□□□□ -0.24
TRIM28-208ENST00000597172 NWD2Q9ULI1 1742 aa13.56□□□□□ -0.24
TRIM28-208ENST00000597172 ADGRB2O60241 1585 aa13.55□□□□□ -0.24
TRIM28-208ENST00000597172 CABLES1Q8TDN4 633 aa13.55□□□□□ -0.24
TRIM28-208ENST00000597172 DCAF11Q8TEB1 546 aa13.54□□□□□ -0.24
TRIM28-208ENST00000597172 FAM83GA6ND36 823 aa13.53□□□□□ -0.24
TRIM28-208ENST00000597172 PLEKHG5O94827 1062 aa13.53□□□□□ -0.24
TRIM28-208ENST00000597172 ROBO2Q9HCK4 1378 aa13.53□□□□□ -0.24
TRIM28-208ENST00000597172 KDM2AQ9Y2K7 1162 aa13.52□□□□□ -0.25
TRIM28-208ENST00000597172 PLCH1Q4KWH8 1693 aa13.52□□□□□ -0.25
TRIM28-208ENST00000597172 ZNF326Q5BKZ1 582 aaKnown RBP13.51□□□□□ -0.25
TRIM28-208ENST00000597172 SYT17Q9BSW7 474 aa13.51□□□□□ -0.25
TRIM28-208ENST00000597172 KIF1BO60333 1816 aa13.5□□□□□ -0.25
TRIM28-208ENST00000597172 NUP188Q5SRE5 1749 aa13.5□□□□□ -0.25
TRIM28-208ENST00000597172 RPGRIP1LQ68CZ1 1315 aa13.5□□□□□ -0.25
TRIM28-208ENST00000597172 KRT28Q7Z3Y7 464 aa13.5□□□□□ -0.25
TRIM28-208ENST00000597172 BTG4Q9NY30 223 aa13.5□□□□□ -0.25
TRIM28-208ENST00000597172 RREB1Q92766 1687 aa13.5□□□□□ -0.25
TRIM28-208ENST00000597172 SPATA31A5Q5VU36 1347 aa13.48□□□□□ -0.25
TRIM28-208ENST00000597172 SPATA31A7Q8IWB4 1347 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms