RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 MYOM2P54296 1465 aa15.54■□□□□ 0.08
LIG1-213ENST00000596672 PNPLA6Q8IY17 1366 aa15.54■□□□□ 0.08
LIG1-213ENST00000596672 SPATA31A6Q5VVP1 1343 aa15.54■□□□□ 0.08
LIG1-213ENST00000596672 CDC42BPGQ6DT37 1551 aa15.53■□□□□ 0.08
LIG1-213ENST00000596672 DHX57Q6P158 1386 aaKnown RBP15.53■□□□□ 0.08
LIG1-213ENST00000596672 SOS2Q07890 1332 aaPredicted RBP15.53■□□□□ 0.08
LIG1-213ENST00000596672 NUTM2BA6NNL0 878 aaPredicted RBP15.53■□□□□ 0.08
LIG1-213ENST00000596672 NUTM2EB1AL46 878 aaPredicted RBP15.53■□□□□ 0.08
LIG1-213ENST00000596672 NUTM2AQ8IVF1 878 aaPredicted RBP15.53■□□□□ 0.08
LIG1-213ENST00000596672 NUTM2FA1L443 756 aa15.52■□□□□ 0.08
LIG1-213ENST00000596672 HRCP23327 699 aa15.52■□□□□ 0.08
LIG1-213ENST00000596672 ADGRB1O14514 1584 aa15.52■□□□□ 0.07
LIG1-213ENST00000596672 RGPD8O14715 1765 aaPredicted RBP15.52■□□□□ 0.07
LIG1-213ENST00000596672 FMN2Q9NZ56 1722 aa15.5■□□□□ 0.07
LIG1-213ENST00000596672 PXDNQ92626 1479 aa15.49■□□□□ 0.07
LIG1-213ENST00000596672 XPCQ01831 940 aaPredicted RBP15.49■□□□□ 0.07
LIG1-213ENST00000596672 LRRC59Q96AG4 307 aaKnown RBP15.49■□□□□ 0.07
LIG1-213ENST00000596672 ACIN1Q9UKV3 1341 aaKnown RBP15.48■□□□□ 0.07
LIG1-213ENST00000596672 ESCO1Q5FWF5 840 aa15.47■□□□□ 0.07
LIG1-213ENST00000596672 SIRT1Q96EB6 747 aa15.47■□□□□ 0.07
LIG1-213ENST00000596672 KDM2AQ9Y2K7 1162 aa15.47■□□□□ 0.07
LIG1-213ENST00000596672 FOXO3O43524 673 aa15.46■□□□□ 0.07
LIG1-213ENST00000596672 SAFB2Q14151 953 aaKnown RBP eCLIP15.46■□□□□ 0.07
LIG1-213ENST00000596672 AFF2P51816 1311 aa15.45■□□□□ 0.06
LIG1-213ENST00000596672 DCAF11Q8TEB1 546 aa15.45■□□□□ 0.06
LIG1-213ENST00000596672 PRAM1Q96QH2 718 aa15.45■□□□□ 0.06
LIG1-213ENST00000596672 USP32Q8NFA0 1604 aa15.45■□□□□ 0.06
LIG1-213ENST00000596672 COL22A1Q8NFW1 1626 aaPredicted RBP15.44■□□□□ 0.06
LIG1-213ENST00000596672 MEX3CQ5U5Q3 659 aaKnown RBP15.44■□□□□ 0.06
LIG1-213ENST00000596672 DLC1Q96QB1 1528 aa15.43■□□□□ 0.06
LIG1-213ENST00000596672 ADAMTS2O95450 1211 aa15.42■□□□□ 0.06
LIG1-213ENST00000596672 TRAK1Q9UPV9 953 aa15.42■□□□□ 0.06
LIG1-213ENST00000596672 C8orf37Q96NL8 207 aa15.41■□□□□ 0.06
LIG1-213ENST00000596672 PRR36Q9H6K5 1346 aa15.41■□□□□ 0.06
LIG1-213ENST00000596672 ZNF772Q68DY9 489 aaPredicted RBP15.4■□□□□ 0.06
LIG1-213ENST00000596672 HIRIP3Q9BW71 556 aaPredicted RBP15.39■□□□□ 0.05
LIG1-213ENST00000596672 NPHP3Q7Z494 1330 aa15.39■□□□□ 0.05
LIG1-213ENST00000596672 ADGRB2O60241 1585 aa15.38■□□□□ 0.05
LIG1-213ENST00000596672 ARHGEF28Q8N1W1 1705 aaKnown RBP15.37■□□□□ 0.05
LIG1-213ENST00000596672 NBPF1Q3BBV0 1214 aa15.37■□□□□ 0.05
LIG1-213ENST00000596672 SPATA31A3Q5VYP0 1347 aa15.37■□□□□ 0.05
LIG1-213ENST00000596672 MINK1Q8N4C8 1332 aaPredicted RBP15.37■□□□□ 0.05
LIG1-213ENST00000596672 KIF1AQ12756 1690 aa15.36■□□□□ 0.05
LIG1-213ENST00000596672 KRT28Q7Z3Y7 464 aa15.36■□□□□ 0.05
LIG1-213ENST00000596672 QTRT2Q9H974 415 aaKnown RBP15.36■□□□□ 0.05
LIG1-213ENST00000596672 PHF8Q9UPP1 1060 aa15.36■□□□□ 0.05
LIG1-213ENST00000596672 MARF1Q9Y4F3 1742 aaKnown RBP15.36■□□□□ 0.05
LIG1-213ENST00000596672 RGS12O14924 1447 aa15.35■□□□□ 0.05
LIG1-213ENST00000596672 RXRBP28702 533 aa15.35■□□□□ 0.05
LIG1-213ENST00000596672 FNBP4Q8N3X1 1017 aaPredicted RBP15.35■□□□□ 0.05
LIG1-213ENST00000596672 NGLY1Q96IV0 654 aa15.35■□□□□ 0.05
LIG1-213ENST00000596672 POGKQ9P215 609 aa15.35■□□□□ 0.05
LIG1-213ENST00000596672 BCL9LQ86UU0 1499 aa15.34■□□□□ 0.05
LIG1-213ENST00000596672 PMFBP1Q8TBY8 1022 aa15.34■□□□□ 0.05
LIG1-213ENST00000596672 CABLES1Q8TDN4 633 aa15.34■□□□□ 0.05
LIG1-213ENST00000596672 SIN3AQ96ST3 1273 aa15.34■□□□□ 0.05
LIG1-213ENST00000596672 TRPM3Q9HCF6 1732 aaPredicted RBP15.33■□□□□ 0.04
LIG1-213ENST00000596672 CDK12Q9NYV4 1490 aaPredicted RBP15.33■□□□□ 0.04
LIG1-213ENST00000596672 UPF1Q92900 1129 aaKnown RBP eCLIP15.32■□□□□ 0.04
LIG1-213ENST00000596672 ATRNO75882 1429 aa15.32■□□□□ 0.04
LIG1-213ENST00000596672 ANKARQ7Z5J8 1434 aa15.32■□□□□ 0.04
LIG1-213ENST00000596672 ABCA3Q99758 1704 aa15.31■□□□□ 0.04
LIG1-213ENST00000596672 WASLO00401 505 aaPredicted RBP15.31■□□□□ 0.04
LIG1-213ENST00000596672 STAC3Q96MF2 364 aa15.31■□□□□ 0.04
LIG1-213ENST00000596672 USP21Q9UK80 565 aa15.31■□□□□ 0.04
LIG1-213ENST00000596672 KIAA1210Q9ULL0 1709 aa15.31■□□□□ 0.04
LIG1-213ENST00000596672 RBM6P78332 1123 aaKnown RBP15.3■□□□□ 0.04
LIG1-213ENST00000596672 L3MBTL2Q969R5 705 aa15.3■□□□□ 0.04
LIG1-213ENST00000596672 EP400Q96L91 3159 aa15.3■□□□□ 0.04
LIG1-213ENST00000596672 TULP4Q9NRJ4 1543 aa15.3■□□□□ 0.04
LIG1-213ENST00000596672 TNS3Q68CZ2 1445 aa15.29■□□□□ 0.04
LIG1-213ENST00000596672 ALS2Q96Q42 1657 aa15.28■□□□□ 0.04
LIG1-213ENST00000596672 SLIT2O94813 1529 aa15.28■□□□□ 0.04
LIG1-213ENST00000596672 ATP7BP35670 1465 aa15.28■□□□□ 0.04
LIG1-213ENST00000596672 SBNO1A3KN83 1393 aa15.28■□□□□ 0.04
LIG1-213ENST00000596672 PLEKHG5O94827 1062 aa15.28■□□□□ 0.04
LIG1-213ENST00000596672 CRYBG1Q9Y4K1 1723 aa15.26■□□□□ 0.03
LIG1-213ENST00000596672 GLI3P10071 1580 aa15.26■□□□□ 0.03
LIG1-213ENST00000596672 PSME1Q06323 249 aa15.25■□□□□ 0.03
LIG1-213ENST00000596672 NUDT16Q96DE0 195 aaKnown RBP15.25■□□□□ 0.03
LIG1-213ENST00000596672 CDK19Q9BWU1 502 aa15.25■□□□□ 0.03
LIG1-213ENST00000596672 TRPC5Q9UL62 973 aaPredicted RBP15.25■□□□□ 0.03
LIG1-213ENST00000596672 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.24■□□□□ 0.03
LIG1-213ENST00000596672 TOPAZ1Q8N9V7 1692 aa15.24■□□□□ 0.03
LIG1-213ENST00000596672 FAM83GA6ND36 823 aa15.23■□□□□ 0.03
LIG1-213ENST00000596672 NBPF8Q3BBV2 869 aa15.23■□□□□ 0.03
LIG1-213ENST00000596672 PLCH1Q4KWH8 1693 aa15.22■□□□□ 0.03
LIG1-213ENST00000596672 NEUROD1Q13562 356 aa15.22■□□□□ 0.03
LIG1-213ENST00000596672 LMOD2Q6P5Q4 547 aa15.22■□□□□ 0.03
LIG1-213ENST00000596672 BRWD3Q6RI45 1802 aa15.22■□□□□ 0.03
LIG1-213ENST00000596672 TRPM1Q7Z4N2 1603 aa15.21■□□□□ 0.03
LIG1-213ENST00000596672 RALGAPBQ86X10 1494 aa15.21■□□□□ 0.03
LIG1-213ENST00000596672 UNC5CLQ8IV45 518 aa15.21■□□□□ 0.03
LIG1-213ENST00000596672 GJD4Q96KN9 370 aaPredicted RBP15.21■□□□□ 0.03
LIG1-213ENST00000596672 ITSN1Q15811 1721 aa15.19■□□□□ 0.02
LIG1-213ENST00000596672 NRAPQ86VF7 1730 aa15.19■□□□□ 0.02
LIG1-213ENST00000596672 ARHGEF10O15013 1369 aa15.19■□□□□ 0.02
LIG1-213ENST00000596672 NGDNQ8NEJ9 315 aaKnown RBP15.18■□□□□ 0.02
LIG1-213ENST00000596672 CABP2Q9NPB3 220 aa15.18■□□□□ 0.02
LIG1-213ENST00000596672 POLR3AO14802 1390 aaPredicted RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms