RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 NISCHQ9Y2I1 1504 aa26.29■■□□□ 1.8
LIG1-213ENST00000596672 CCDC180Q9P1Z9 1646 aa23.44■■□□□ 1.34
LIG1-213ENST00000596672 ABCC9O60706 1549 aa23.35■■□□□ 1.33
LIG1-213ENST00000596672 RB1CC1Q8TDY2 1594 aa22.2■■□□□ 1.14
LIG1-213ENST00000596672 NACADO15069 1562 aa22.11■■□□□ 1.13
LIG1-213ENST00000596672 DCAF8L2P0C7V8 631 aa22.05■■□□□ 1.12
LIG1-213ENST00000596672 DNAJC5BQ9UF47 199 aa21.91■■□□□ 1.1
LIG1-213ENST00000596672 UNC13AQ9UPW8 1703 aa21.87■■□□□ 1.09
LIG1-213ENST00000596672 MYO15BQ96JP2 1530 aa21.86■■□□□ 1.09
LIG1-213ENST00000596672 ZCCHC6Q5VYS8 1495 aaKnown RBP21.83■■□□□ 1.08
LIG1-213ENST00000596672 PABPN1Q86U42 306 aaKnown RBP eCLIP21.81■■□□□ 1.089e-7■■■■□ 26.7
LIG1-213ENST00000596672 BICRAQ9NZM4 1560 aa21.73■■□□□ 1.07
LIG1-213ENST00000596672 DCAF1Q9Y4B6 1507 aa21.67■■□□□ 1.06
LIG1-213ENST00000596672 SCRIBQ14160 1630 aa21.44■■□□□ 1.02
LIG1-213ENST00000596672 SHROOM4Q9ULL8 1493 aa21.21■□□□□ 0.99
LIG1-213ENST00000596672 CC2D2AQ9P2K1 1620 aa21.09■□□□□ 0.97
LIG1-213ENST00000596672 EIF4G1Q04637 1599 aaKnown RBP21.08■□□□□ 0.97
LIG1-213ENST00000596672 CECR2Q9BXF3 1484 aa20.97■□□□□ 0.95
LIG1-213ENST00000596672 NCAPD3P42695 1498 aa20.47■□□□□ 0.87
LIG1-213ENST00000596672 SMARCA4P51532 1647 aa20.46■□□□□ 0.87
LIG1-213ENST00000596672 ATAD2BQ9ULI0 1458 aa20.45■□□□□ 0.86
LIG1-213ENST00000596672 MROH2BQ7Z745 1585 aa20.33■□□□□ 0.84
LIG1-213ENST00000596672 BAZ1AQ9NRL2 1556 aaPredicted RBP20.32■□□□□ 0.84
LIG1-213ENST00000596672 SMARCA2P51531 1590 aa20.3■□□□□ 0.84
LIG1-213ENST00000596672 HMGXB3Q12766 1538 aa20.28■□□□□ 0.84
LIG1-213ENST00000596672 PEG3Q9GZU2 1588 aa20.25■□□□□ 0.83
LIG1-213ENST00000596672 BAZ1BQ9UIG0 1483 aaKnown RBP20.18■□□□□ 0.82
LIG1-213ENST00000596672 NESP48681 1621 aa20.18■□□□□ 0.82
LIG1-213ENST00000596672 WIZO95785 1651 aa20.08■□□□□ 0.81
LIG1-213ENST00000596672 ERCC6Q03468 1493 aa20.02■□□□□ 0.8
LIG1-213ENST00000596672 RSF1Q96T23 1441 aaPredicted RBP19.94■□□□□ 0.78
LIG1-213ENST00000596672 CUX2O14529 1486 aa19.94■□□□□ 0.78
LIG1-213ENST00000596672 LAMC3Q9Y6N6 1575 aa19.91■□□□□ 0.78
LIG1-213ENST00000596672 THOC2Q8NI27 1593 aaKnown RBP19.87■□□□□ 0.77
LIG1-213ENST00000596672 KIF21AQ7Z4S6 1674 aa19.87■□□□□ 0.77
LIG1-213ENST00000596672 CADPSQ9ULU8 1353 aa19.83■□□□□ 0.77
LIG1-213ENST00000596672 DNAJC5Q9H3Z4 198 aa19.82■□□□□ 0.76
LIG1-213ENST00000596672 TOP2AP11388 1531 aaKnown RBP19.76■□□□□ 0.75
LIG1-213ENST00000596672 PDS5BQ9NTI5 1447 aa19.76■□□□□ 0.75
LIG1-213ENST00000596672 CFTRP13569 1480 aa19.67■□□□□ 0.74
LIG1-213ENST00000596672 MRC2Q9UBG0 1479 aa19.63■□□□□ 0.73
LIG1-213ENST00000596672 WDR62O43379 1518 aa19.61■□□□□ 0.73
LIG1-213ENST00000596672 FANCD2Q9BXW9 1451 aa19.6■□□□□ 0.73
LIG1-213ENST00000596672 CCDC88BA6NC98 1476 aa19.6■□□□□ 0.73
LIG1-213ENST00000596672 CEP164Q9UPV0 1460 aa19.56■□□□□ 0.72
LIG1-213ENST00000596672 URB2Q14146 1524 aaKnown RBP19.51■□□□□ 0.71
LIG1-213ENST00000596672 PRDM2Q13029 1718 aa19.45■□□□□ 0.7
LIG1-213ENST00000596672 TOPBP1Q92547 1522 aa19.29■□□□□ 0.68
LIG1-213ENST00000596672 ZNF608Q9ULD9 1512 aaPredicted RBP19.26■□□□□ 0.67
LIG1-213ENST00000596672 DNMBPQ6XZF7 1577 aa19.19■□□□□ 0.66
LIG1-213ENST00000596672 IFT140Q96RY7 1462 aa19.17■□□□□ 0.66
LIG1-213ENST00000596672 SUPT5HO00267 1087 aaKnown RBP19.16■□□□□ 0.66
LIG1-213ENST00000596672 TARBP1Q13395 1621 aaKnown RBP19.14■□□□□ 0.65
LIG1-213ENST00000596672 ABCC8Q09428 1581 aa19.12■□□□□ 0.65
LIG1-213ENST00000596672 POLA1P09884 1462 aaPredicted RBP19.11■□□□□ 0.65
LIG1-213ENST00000596672 RAD54L2Q9Y4B4 1467 aa19.09■□□□□ 0.65
LIG1-213ENST00000596672 EIF4G3O43432 1585 aaKnown RBP19.08■□□□□ 0.65
LIG1-213ENST00000596672 AQRO60306 1485 aaKnown RBP eCLIP19.08■□□□□ 0.641e-7■■■■□ 26.1
LIG1-213ENST00000596672 OSCARQ8IYS5 282 aa19.07■□□□□ 0.64
LIG1-213ENST00000596672 CUX1P39880 1505 aa19.06■□□□□ 0.64
LIG1-213ENST00000596672 FGD5Q6ZNL6 1462 aa19.01■□□□□ 0.63
LIG1-213ENST00000596672 TRIM41Q8WV44 630 aa18.99■□□□□ 0.63
LIG1-213ENST00000596672 SOGA1O94964 1423 aa18.99■□□□□ 0.63
LIG1-213ENST00000596672 TDRD9Q8NDG6 1382 aaKnown RBP18.98■□□□□ 0.63
LIG1-213ENST00000596672 CHD1O14646 1710 aa18.93■□□□□ 0.62
LIG1-213ENST00000596672 WDR97A6NE52 1622 aa18.89■□□□□ 0.61
LIG1-213ENST00000596672 RIMBP3CA6NJZ7 1639 aa18.89■□□□□ 0.61
LIG1-213ENST00000596672 RIMBP3BA6NNM3 1639 aa18.89■□□□□ 0.61
LIG1-213ENST00000596672 RIMBP3Q9UFD9 1639 aa18.89■□□□□ 0.61
LIG1-213ENST00000596672 SNAPC4Q5SXM2 1469 aa18.84■□□□□ 0.61
LIG1-213ENST00000596672 ARHGEF11O15085 1522 aa18.83■□□□□ 0.6
LIG1-213ENST00000596672 FBLN2P98095 1184 aa18.81■□□□□ 0.6
LIG1-213ENST00000596672 SYNJ1O43426 1573 aa18.8■□□□□ 0.6
LIG1-213ENST00000596672 ABCA10Q8WWZ4 1543 aa18.78■□□□□ 0.6
LIG1-213ENST00000596672 GRIN2BQ13224 1484 aa18.77■□□□□ 0.6
LIG1-213ENST00000596672 ABCA5Q8WWZ7 1642 aa18.77■□□□□ 0.6
LIG1-213ENST00000596672 BIVM-ERCC5R4GMW8 1640 aa18.75■□□□□ 0.59
LIG1-213ENST00000596672 GAPVD1Q14C86 1478 aa18.75■□□□□ 0.59
LIG1-213ENST00000596672 PBRM1Q86U86 1689 aa18.75■□□□□ 0.59
LIG1-213ENST00000596672 TOP2BQ02880 1626 aa18.74■□□□□ 0.59
LIG1-213ENST00000596672 MAGI1Q96QZ7 1491 aaPredicted RBP18.73■□□□□ 0.59
LIG1-213ENST00000596672 CLASP1Q7Z460 1538 aa18.73■□□□□ 0.59
LIG1-213ENST00000596672 WRNQ14191 1432 aaPredicted RBP eCLIP18.73■□□□□ 0.59
LIG1-213ENST00000596672 ARAP1Q96P48 1450 aa18.7■□□□□ 0.58
LIG1-213ENST00000596672 SYNJ2O15056 1496 aa18.69■□□□□ 0.58
LIG1-213ENST00000596672 CHMP7Q8WUX9 453 aaPredicted RBP18.68■□□□□ 0.58
LIG1-213ENST00000596672 CYB5RLQ6IPT4 315 aa18.67■□□□□ 0.58
LIG1-213ENST00000596672 ADAMTS12P58397 1594 aa18.59■□□□□ 0.57
LIG1-213ENST00000596672 GRIN2AQ12879 1464 aa18.56■□□□□ 0.56
LIG1-213ENST00000596672 CEP170Q5SW79 1584 aa18.55■□□□□ 0.56
LIG1-213ENST00000596672 ERCC6L2Q5T890 1561 aa18.55■□□□□ 0.56
LIG1-213ENST00000596672 NUP160Q12769 1436 aa18.52■□□□□ 0.56
LIG1-213ENST00000596672 FHAD1B1AJZ9 1412 aa18.5■□□□□ 0.55
LIG1-213ENST00000596672 ERICH3Q5RHP9 1530 aa18.5■□□□□ 0.55
LIG1-213ENST00000596672 SHROOM2Q13796 1616 aa18.43■□□□□ 0.54
LIG1-213ENST00000596672 IGF1RP08069 1367 aa18.42■□□□□ 0.54
LIG1-213ENST00000596672 RUSC2Q8N2Y8 1516 aa18.33■□□□□ 0.52
LIG1-213ENST00000596672 KIF27Q86VH2 1401 aa18.32■□□□□ 0.52
LIG1-213ENST00000596672 TRHP20396 242 aaPredicted RBP18.31■□□□□ 0.52
LIG1-213ENST00000596672 JPH4Q96JJ6 628 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms