RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-215ENST00000592911 TRPC5Q9UL62 973 aaPredicted RBP13.41□□□□□ -0.26
SMAD4-215ENST00000592911 KIF1BO60333 1816 aa13.41□□□□□ -0.26
SMAD4-215ENST00000592911 SOS2Q07890 1332 aaPredicted RBP13.4□□□□□ -0.26
SMAD4-215ENST00000592911 FNBP4Q8N3X1 1017 aaPredicted RBP13.4□□□□□ -0.26
SMAD4-215ENST00000592911 NUP155O75694 1391 aa13.4□□□□□ -0.26
SMAD4-215ENST00000592911 C1orf167Q5SNV9 1468 aa13.4□□□□□ -0.26
SMAD4-215ENST00000592911 LOC105371045A0A1W2PR82 267 aa13.39□□□□□ -0.27
SMAD4-215ENST00000592911 SAMD1Q6SPF0 538 aaPredicted RBP13.39□□□□□ -0.27
SMAD4-215ENST00000592911 EP400Q96L91 3159 aa13.39□□□□□ -0.27
SMAD4-215ENST00000592911 MARF1Q9Y4F3 1742 aaKnown RBP13.39□□□□□ -0.27
SMAD4-215ENST00000592911 NEXMIFQ5QGS0 1516 aa13.39□□□□□ -0.27
SMAD4-215ENST00000592911 METP08581 1390 aa13.38□□□□□ -0.27
SMAD4-215ENST00000592911 ZRANB1Q9UGI0 708 aa13.38□□□□□ -0.27
SMAD4-215ENST00000592911 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.38□□□□□ -0.27
SMAD4-215ENST00000592911 ATRNO75882 1429 aa13.38□□□□□ -0.27
SMAD4-215ENST00000592911 HFM1A2PYH4 1435 aa13.37□□□□□ -0.27
SMAD4-215ENST00000592911 NUTM2DQ5VT03 806 aaPredicted RBP13.36□□□□□ -0.27
SMAD4-215ENST00000592911 USP21Q9UK80 565 aa13.35□□□□□ -0.27
SMAD4-215ENST00000592911 MYOM2P54296 1465 aa13.35□□□□□ -0.27
SMAD4-215ENST00000592911 CDC42BPGQ6DT37 1551 aa13.34□□□□□ -0.27
SMAD4-215ENST00000592911 CLTCL1P53675 1640 aa13.33□□□□□ -0.28
SMAD4-215ENST00000592911 ZNF326Q5BKZ1 582 aaKnown RBP13.33□□□□□ -0.28
SMAD4-215ENST00000592911 RPGRIP1LQ68CZ1 1315 aa13.33□□□□□ -0.28
SMAD4-215ENST00000592911 NPHP3Q7Z494 1330 aa13.33□□□□□ -0.28
SMAD4-215ENST00000592911 LRPPRCP42704 1394 aaKnown RBP13.32□□□□□ -0.28
SMAD4-215ENST00000592911 VGFO15240 615 aaPredicted RBP13.32□□□□□ -0.28
SMAD4-215ENST00000592911 ATXN8OSP0DMR3 200 aa13.32□□□□□ -0.28
SMAD4-215ENST00000592911 ATF5Q9Y2D1 282 aaPredicted RBP13.31□□□□□ -0.28
SMAD4-215ENST00000592911 ADAMTS2O95450 1211 aa13.3□□□□□ -0.28
SMAD4-215ENST00000592911 BCL9LQ86UU0 1499 aa13.29□□□□□ -0.28
SMAD4-215ENST00000592911 LRP5O75197 1615 aa13.29□□□□□ -0.28
SMAD4-215ENST00000592911 BLMP54132 1417 aaPredicted RBP13.29□□□□□ -0.28
SMAD4-215ENST00000592911 PPLO60437 1756 aa13.28□□□□□ -0.28
SMAD4-215ENST00000592911 SPINK5Q9NQ38 1064 aaPredicted RBP13.28□□□□□ -0.28
SMAD4-215ENST00000592911 ROBO2Q9HCK4 1378 aa13.28□□□□□ -0.28
SMAD4-215ENST00000592911 PXDNQ92626 1479 aa13.28□□□□□ -0.28
SMAD4-215ENST00000592911 DDX17Q92841 729 aaKnown RBP13.27□□□□□ -0.29
SMAD4-215ENST00000592911 KIF1AQ12756 1690 aa13.27□□□□□ -0.29
SMAD4-215ENST00000592911 TECPR2O15040 1411 aa13.26□□□□□ -0.29
SMAD4-215ENST00000592911 GJD4Q96KN9 370 aaPredicted RBP13.26□□□□□ -0.29
SMAD4-215ENST00000592911 NWD2Q9ULI1 1742 aa13.25□□□□□ -0.29
SMAD4-215ENST00000592911 SLIT2O94813 1529 aa13.25□□□□□ -0.29
SMAD4-215ENST00000592911 ORAI2Q96SN7 254 aa13.25□□□□□ -0.29
SMAD4-215ENST00000592911 KNDC1Q76NI1 1749 aa13.25□□□□□ -0.29
SMAD4-215ENST00000592911 CCDC144AA2RUR9 1427 aa13.23□□□□□ -0.29
SMAD4-215ENST00000592911 USP32Q8NFA0 1604 aa13.22□□□□□ -0.29
SMAD4-215ENST00000592911 CACNB1Q02641 598 aaPredicted RBP13.22□□□□□ -0.29
SMAD4-215ENST00000592911 UNC5CLQ8IV45 518 aa13.22□□□□□ -0.29
SMAD4-215ENST00000592911 RALGAPBQ86X10 1494 aa13.22□□□□□ -0.29
SMAD4-215ENST00000592911 GLI3P10071 1580 aa13.21□□□□□ -0.29
SMAD4-215ENST00000592911 BRWD3Q6RI45 1802 aa13.21□□□□□ -0.29
SMAD4-215ENST00000592911 FMN2Q9NZ56 1722 aa13.2□□□□□ -0.3
SMAD4-215ENST00000592911 SF3B2Q13435 895 aaKnown RBP13.2□□□□□ -0.3
SMAD4-215ENST00000592911 ABCC11Q96J66 1382 aa13.2□□□□□ -0.3
SMAD4-215ENST00000592911 ONECUT3O60422 494 aaPredicted RBP13.19□□□□□ -0.3
SMAD4-215ENST00000592911 ESCO1Q5FWF5 840 aa13.19□□□□□ -0.3
SMAD4-215ENST00000592911 NAIPQ13075 1403 aa13.19□□□□□ -0.3
SMAD4-215ENST00000592911 SPATA31A3Q5VYP0 1347 aa13.18□□□□□ -0.3
SMAD4-215ENST00000592911 SIRT1Q96EB6 747 aa13.18□□□□□ -0.3
SMAD4-215ENST00000592911 ANKRD30BQ9BXX2 1392 aa13.18□□□□□ -0.3
SMAD4-215ENST00000592911 CAPN15O75808 1086 aa13.17□□□□□ -0.3
SMAD4-215ENST00000592911 VPS72Q15906 364 aa13.17□□□□□ -0.3
SMAD4-215ENST00000592911 IFT172Q9UG01 1749 aa13.16□□□□□ -0.3
SMAD4-215ENST00000592911 RRBP1Q9P2E9 1410 aaKnown RBP13.16□□□□□ -0.3
SMAD4-215ENST00000592911 FOXO3O43524 673 aa13.16□□□□□ -0.3
SMAD4-215ENST00000592911 SBNO1A3KN83 1393 aa13.16□□□□□ -0.3
SMAD4-215ENST00000592911 PLCH1Q4KWH8 1693 aa13.15□□□□□ -0.3
SMAD4-215ENST00000592911 TNS3Q68CZ2 1445 aa13.15□□□□□ -0.3
SMAD4-215ENST00000592911 ARHGEF10O15013 1369 aa13.15□□□□□ -0.3
SMAD4-215ENST00000592911 RGPD1P0DJD0 1748 aa13.14□□□□□ -0.31
SMAD4-215ENST00000592911 ABCA3Q99758 1704 aa13.14□□□□□ -0.31
SMAD4-215ENST00000592911 PSME1Q06323 249 aa13.14□□□□□ -0.31
SMAD4-215ENST00000592911 ACIN1Q9UKV3 1341 aaKnown RBP13.13□□□□□ -0.31
SMAD4-215ENST00000592911 DISP2A7MBM2 1401 aa13.13□□□□□ -0.31
SMAD4-215ENST00000592911 BAG6P46379 1132 aa13.12□□□□□ -0.31
SMAD4-215ENST00000592911 KRT27Q7Z3Y8 459 aa13.12□□□□□ -0.31
SMAD4-215ENST00000592911 SEPT12Q8IYM1 358 aa13.12□□□□□ -0.31
SMAD4-215ENST00000592911 PIK3C2GO75747 1445 aa13.12□□□□□ -0.31
SMAD4-215ENST00000592911 NRXN1Q9ULB1 1477 aa13.11□□□□□ -0.31
SMAD4-215ENST00000592911 ITGAEP38570 1179 aa13.11□□□□□ -0.31
SMAD4-215ENST00000592911 SPATA31E1Q6ZUB1 1445 aa13.1□□□□□ -0.31
SMAD4-215ENST00000592911 ANKARQ7Z5J8 1434 aa13.1□□□□□ -0.31
SMAD4-215ENST00000592911 NRAPQ86VF7 1730 aa13.1□□□□□ -0.31
SMAD4-215ENST00000592911 RGPD8O14715 1765 aaPredicted RBP13.09□□□□□ -0.31
SMAD4-215ENST00000592911 KRT28Q7Z3Y7 464 aa13.09□□□□□ -0.31
SMAD4-215ENST00000592911 YTHDC2Q9H6S0 1430 aaKnown RBP13.09□□□□□ -0.31
SMAD4-215ENST00000592911 ZNF219Q9P2Y4 722 aaPredicted RBP13.09□□□□□ -0.31
SMAD4-215ENST00000592911 COL14A1Q05707 1796 aaKnown RBP13.09□□□□□ -0.31
SMAD4-215ENST00000592911 DEFB132Q7Z7B7 95 aa13.08□□□□□ -0.32
SMAD4-215ENST00000592911 DLC1Q96QB1 1528 aa13.08□□□□□ -0.32
SMAD4-215ENST00000592911 EIF3AQ14152 1382 aaKnown RBP13.07□□□□□ -0.32
SMAD4-215ENST00000592911 PARD3Q8TEW0 1356 aa13.07□□□□□ -0.32
SMAD4-215ENST00000592911 ADGRB2O60241 1585 aa13.07□□□□□ -0.32
SMAD4-215ENST00000592911 HAP1P54257 671 aaPredicted RBP13.07□□□□□ -0.32
SMAD4-215ENST00000592911 PHF8Q9UPP1 1060 aa13.07□□□□□ -0.32
SMAD4-215ENST00000592911 HRCP23327 699 aa13.06□□□□□ -0.32
SMAD4-215ENST00000592911 XPCQ01831 940 aaPredicted RBP13.06□□□□□ -0.32
SMAD4-215ENST00000592911 ADGRF5Q8IZF2 1346 aa13.06□□□□□ -0.32
SMAD4-215ENST00000592911 WAPLQ7Z5K2 1190 aa13.05□□□□□ -0.32
SMAD4-215ENST00000592911 ALS2Q96Q42 1657 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms