RNA–Protein interactions for RNA: ENST00000590696.1

DDX39A-215, Transcript of DExD-box helicase 39A, human

TSL 4

Gene DDX39A, Length 563 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-215	ENST00000590696	TMEM132E	Q6IEE7	984 aa		32.33	■■■□□ 2.77
DDX39A-215	ENST00000590696	WAPL	Q7Z5K2	1190 aa		32.33	■■■□□ 2.77
DDX39A-215	ENST00000590696	LRPPRC	P42704	1394 aa	Known RBP	32.32	■■■□□ 2.77
DDX39A-215	ENST00000590696	CDC42BPG	Q6DT37	1551 aa		32.32	■■■□□ 2.77
DDX39A-215	ENST00000590696	ESCO1	Q5FWF5	840 aa		32.32	■■■□□ 2.76
DDX39A-215	ENST00000590696	ADAMTS2	O95450	1211 aa		32.31	■■■□□ 2.76
DDX39A-215	ENST00000590696	TECPR2	O15040	1411 aa		32.31	■■■□□ 2.76
DDX39A-215	ENST00000590696	PIK3C2G	O75747	1445 aa		32.31	■■■□□ 2.76
DDX39A-215	ENST00000590696	ABCC11	Q96J66	1382 aa		32.29	■■■□□ 2.76
DDX39A-215	ENST00000590696	QTRT2	Q9H974	415 aa	Known RBP	32.28	■■■□□ 2.76
DDX39A-215	ENST00000590696	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.28	■■■□□ 2.76
DDX39A-215	ENST00000590696	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.27	■■■□□ 2.76
DDX39A-215	ENST00000590696	NGLY1	Q96IV0	654 aa		32.27	■■■□□ 2.76
DDX39A-215	ENST00000590696	NPHP3	Q7Z494	1330 aa		32.26	■■■□□ 2.75
DDX39A-215	ENST00000590696	PLEKHH1	Q9ULM0	1364 aa		32.25	■■■□□ 2.75
DDX39A-215	ENST00000590696	NUTM2F	A1L443	756 aa		32.25	■■■□□ 2.75
DDX39A-215	ENST00000590696	KNDC1	Q76NI1	1749 aa		32.25	■■■□□ 2.75
DDX39A-215	ENST00000590696	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.23	■■■□□ 2.75
DDX39A-215	ENST00000590696	FOXO3	O43524	673 aa		32.22	■■■□□ 2.75
DDX39A-215	ENST00000590696	RBM6	P78332	1123 aa	Known RBP	32.22	■■■□□ 2.75
DDX39A-215	ENST00000590696	C14orf93	Q9H972	538 aa	Known RBP	32.21	■■■□□ 2.75
DDX39A-215	ENST00000590696	RAB3GAP2	Q9H2M9	1393 aa		32.2	■■■□□ 2.75
DDX39A-215	ENST00000590696	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.19	■■■□□ 2.74
DDX39A-215	ENST00000590696	PXDN	Q92626	1479 aa		32.19	■■■□□ 2.74
DDX39A-215	ENST00000590696	XPC	Q01831	940 aa	Predicted RBP	32.19	■■■□□ 2.74
DDX39A-215	ENST00000590696	CFAP70	Q5T0N1	1121 aa		32.17	■■■□□ 2.74
DDX39A-215	ENST00000590696	SIRT1	Q96EB6	747 aa		32.17	■■■□□ 2.74
DDX39A-215	ENST00000590696	RGS12	O14924	1447 aa		32.17	■■■□□ 2.74
DDX39A-215	ENST00000590696	NRXN1	Q9ULB1	1477 aa		32.16	■■■□□ 2.74
DDX39A-215	ENST00000590696	USP21	Q9UK80	565 aa		32.16	■■■□□ 2.74
DDX39A-215	ENST00000590696	MYOM2	P54296	1465 aa		32.15	■■■□□ 2.74
DDX39A-215	ENST00000590696	DHX57	Q6P158	1386 aa	Known RBP	32.14	■■■□□ 2.74
DDX39A-215	ENST00000590696	FMN2	Q9NZ56	1722 aa		32.14	■■■□□ 2.74
DDX39A-215	ENST00000590696	FNBP4	Q8N3X1	1017 aa	Predicted RBP	32.12	■■■□□ 2.73
DDX39A-215	ENST00000590696	TRPC5	Q9UL62	973 aa	Predicted RBP	32.1	■■■□□ 2.73
DDX39A-215	ENST00000590696	KIF1A	Q12756	1690 aa		32.05	■■■□□ 2.72
DDX39A-215	ENST00000590696	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.05	■■■□□ 2.72
DDX39A-215	ENST00000590696	PRAM1	Q96QH2	718 aa		32.05	■■■□□ 2.72
DDX39A-215	ENST00000590696	KRT28	Q7Z3Y7	464 aa		32.04	■■■□□ 2.72
DDX39A-215	ENST00000590696	SPATA31A3	Q5VYP0	1347 aa		32.03	■■■□□ 2.72
DDX39A-215	ENST00000590696	ATRN	O75882	1429 aa		32.03	■■■□□ 2.72
DDX39A-215	ENST00000590696	MARF1	Q9Y4F3	1742 aa	Known RBP	32.02	■■■□□ 2.72
DDX39A-215	ENST00000590696	PHF8	Q9UPP1	1060 aa		32.01	■■■□□ 2.71
DDX39A-215	ENST00000590696	RGPD8	O14715	1765 aa	Predicted RBP	32.01	■■■□□ 2.71
DDX39A-215	ENST00000590696	POGK	Q9P215	609 aa		32	■■■□□ 2.71
DDX39A-215	ENST00000590696	BCL9L	Q86UU0	1499 aa		31.99	■■■□□ 2.71
DDX39A-215	ENST00000590696	KDM2A	Q9Y2K7	1162 aa		31.98	■■■□□ 2.71
DDX39A-215	ENST00000590696	DLC1	Q96QB1	1528 aa		31.98	■■■□□ 2.71
DDX39A-215	ENST00000590696	DCAF11	Q8TEB1	546 aa		31.96	■■■□□ 2.71
DDX39A-215	ENST00000590696	ADGRB1	O14514	1584 aa		31.95	■■■□□ 2.71
DDX39A-215	ENST00000590696	PSME1	Q06323	249 aa		31.95	■■■□□ 2.71
DDX39A-215	ENST00000590696	TRAK1	Q9UPV9	953 aa		31.95	■■■□□ 2.71
DDX39A-215	ENST00000590696	HRC	P23327	699 aa		31.93	■■■□□ 2.7
DDX39A-215	ENST00000590696	ATAD2	Q6PL18	1390 aa		31.93	■■■□□ 2.7
DDX39A-215	ENST00000590696	TNS3	Q68CZ2	1445 aa		31.92	■■■□□ 2.7
DDX39A-215	ENST00000590696	GJD4	Q96KN9	370 aa	Predicted RBP	31.9	■■■□□ 2.7
DDX39A-215	ENST00000590696	PMFBP1	Q8TBY8	1022 aa		31.89	■■■□□ 2.7
DDX39A-215	ENST00000590696	HAP1	P54257	671 aa	Predicted RBP	31.88	■■■□□ 2.69
DDX39A-215	ENST00000590696	UNC5CL	Q8IV45	518 aa		31.88	■■■□□ 2.69
DDX39A-215	ENST00000590696	STAC3	Q96MF2	364 aa		31.88	■■■□□ 2.69
DDX39A-215	ENST00000590696	HIRIP3	Q9BW71	556 aa	Predicted RBP	31.88	■■■□□ 2.69
DDX39A-215	ENST00000590696	ANKAR	Q7Z5J8	1434 aa		31.88	■■■□□ 2.69
DDX39A-215	ENST00000590696	ADGRB2	O60241	1585 aa		31.88	■■■□□ 2.69
DDX39A-215	ENST00000590696	USP32	Q8NFA0	1604 aa		31.88	■■■□□ 2.69
DDX39A-215	ENST00000590696	SLIT2	O94813	1529 aa		31.87	■■■□□ 2.69
DDX39A-215	ENST00000590696	SBNO1	A3KN83	1393 aa		31.87	■■■□□ 2.69
DDX39A-215	ENST00000590696	PLEKHG5	O94827	1062 aa		31.87	■■■□□ 2.69
DDX39A-215	ENST00000590696	LMOD2	Q6P5Q4	547 aa		31.87	■■■□□ 2.69
DDX39A-215	ENST00000590696	CABLES1	Q8TDN4	633 aa		31.87	■■■□□ 2.69
DDX39A-215	ENST00000590696	MINK1	Q8N4C8	1332 aa	Predicted RBP	31.86	■■■□□ 2.69
DDX39A-215	ENST00000590696	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	31.86	■■■□□ 2.69
DDX39A-215	ENST00000590696	ARHGEF10	O15013	1369 aa		31.81	■■■□□ 2.68
DDX39A-215	ENST00000590696	RALGAPB	Q86X10	1494 aa		31.79	■■■□□ 2.68
DDX39A-215	ENST00000590696	WASL	O00401	505 aa	Predicted RBP	31.79	■■■□□ 2.68
DDX39A-215	ENST00000590696	EIF3A	Q14152	1382 aa	Known RBP	31.79	■■■□□ 2.68
DDX39A-215	ENST00000590696	PRR36	Q9H6K5	1346 aa		31.78	■■■□□ 2.68
DDX39A-215	ENST00000590696	GLI3	P10071	1580 aa		31.78	■■■□□ 2.68
DDX39A-215	ENST00000590696	TULP4	Q9NRJ4	1543 aa		31.76	■■■□□ 2.68
DDX39A-215	ENST00000590696	ABCA3	Q99758	1704 aa		31.75	■■■□□ 2.67
DDX39A-215	ENST00000590696	GPRASP1	Q5JY77	1395 aa		31.74	■■■□□ 2.67
DDX39A-215	ENST00000590696	TRPM3	Q9HCF6	1732 aa	Predicted RBP	31.73	■■■□□ 2.67
DDX39A-215	ENST00000590696	VPS72	Q15906	364 aa		31.72	■■■□□ 2.67
DDX39A-215	ENST00000590696	PLCH1	Q4KWH8	1693 aa		31.72	■■■□□ 2.67
DDX39A-215	ENST00000590696	CCDC125	Q86Z20	511 aa		31.71	■■■□□ 2.67
DDX39A-215	ENST00000590696	ARHGEF28	Q8N1W1	1705 aa	Known RBP	31.7	■■■□□ 2.67
DDX39A-215	ENST00000590696	NWD2	Q9ULI1	1742 aa		31.7	■■■□□ 2.67
DDX39A-215	ENST00000590696	FAM83G	A6ND36	823 aa		31.7	■■■□□ 2.67
DDX39A-215	ENST00000590696	EP400	Q96L91	3159 aa		31.7	■■■□□ 2.66
DDX39A-215	ENST00000590696	NGDN	Q8NEJ9	315 aa	Known RBP	31.69	■■■□□ 2.66
DDX39A-215	ENST00000590696	CCDC9	Q9Y3X0	531 aa	Known RBP	31.69	■■■□□ 2.66
DDX39A-215	ENST00000590696	ALS2	Q96Q42	1657 aa		31.67	■■■□□ 2.66
DDX39A-215	ENST00000590696	SEPT12	Q8IYM1	358 aa		31.66	■■■□□ 2.66
DDX39A-215	ENST00000590696	PAK3	O75914	559 aa	Predicted RBP	31.64	■■■□□ 2.66
DDX39A-215	ENST00000590696	NUDT16	Q96DE0	195 aa	Known RBP	31.64	■■■□□ 2.66
DDX39A-215	ENST00000590696	BRWD3	Q6RI45	1802 aa		31.63	■■■□□ 2.65
DDX39A-215	ENST00000590696	ONECUT3	O60422	494 aa	Predicted RBP	31.62	■■■□□ 2.65
DDX39A-215	ENST00000590696	ATP7B	P35670	1465 aa		31.62	■■■□□ 2.65
DDX39A-215	ENST00000590696	CDK19	Q9BWU1	502 aa		31.61	■■■□□ 2.65
DDX39A-215	ENST00000590696	BTG4	Q9NY30	223 aa		31.61	■■■□□ 2.65
DDX39A-215	ENST00000590696	ITSN1	Q15811	1721 aa		31.6	■■■□□ 2.65

Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms