RNA–Protein interactions for RNA: ENST00000585428.1

SDF2-202, Transcript of stromal cell derived factor 2, humanhuman

TSL 1 (best)

Gene SDF2, Length 924 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-202ENST00000585428 ESCO1Q5FWF5 840 aa21.69■■□□□ 1.06
SDF2-202ENST00000585428 WAPLQ7Z5K2 1190 aa21.68■■□□□ 1.06
SDF2-202ENST00000585428 USP21Q9UK80 565 aa21.68■■□□□ 1.06
SDF2-202ENST00000585428 RGS12O14924 1447 aa21.66■■□□□ 1.06
SDF2-202ENST00000585428 SPATA31E1Q6ZUB1 1445 aa21.66■■□□□ 1.06
SDF2-202ENST00000585428 NPHP3Q7Z494 1330 aa21.66■■□□□ 1.06
SDF2-202ENST00000585428 FOXO3O43524 673 aa21.66■■□□□ 1.06
SDF2-202ENST00000585428 STK26Q9P289 416 aa21.66■■□□□ 1.06
SDF2-202ENST00000585428 ABCC11Q96J66 1382 aa21.65■■□□□ 1.06
SDF2-202ENST00000585428 TRPC5Q9UL62 973 aaPredicted RBP21.65■■□□□ 1.06
SDF2-202ENST00000585428 CCDC144AA2RUR9 1427 aa21.64■■□□□ 1.06
SDF2-202ENST00000585428 ANKRD30BQ9BXX2 1392 aa21.64■■□□□ 1.06
SDF2-202ENST00000585428 TMEM132EQ6IEE7 984 aa21.64■■□□□ 1.05
SDF2-202ENST00000585428 PPLO60437 1756 aa21.64■■□□□ 1.05
SDF2-202ENST00000585428 LRPPRCP42704 1394 aaKnown RBP21.63■■□□□ 1.05
SDF2-202ENST00000585428 TECPR2O15040 1411 aa21.63■■□□□ 1.05
SDF2-202ENST00000585428 SIRT1Q96EB6 747 aa21.62■■□□□ 1.05
SDF2-202ENST00000585428 NUTM2FA1L443 756 aa21.6■■□□□ 1.05
SDF2-202ENST00000585428 XPCQ01831 940 aaPredicted RBP21.6■■□□□ 1.05
SDF2-202ENST00000585428 PXDNQ92626 1479 aa21.59■■□□□ 1.05
SDF2-202ENST00000585428 PLEKHH1Q9ULM0 1364 aa21.59■■□□□ 1.05
SDF2-202ENST00000585428 MYOM2P54296 1465 aa21.58■■□□□ 1.05
SDF2-202ENST00000585428 ATRNO75882 1429 aa21.58■■□□□ 1.05
SDF2-202ENST00000585428 C14orf93Q9H972 538 aaKnown RBP21.58■■□□□ 1.05
SDF2-202ENST00000585428 CDC42BPGQ6DT37 1551 aa21.57■■□□□ 1.04
SDF2-202ENST00000585428 BCL9LQ86UU0 1499 aa21.57■■□□□ 1.04
SDF2-202ENST00000585428 COL22A1Q8NFW1 1626 aaPredicted RBP21.56■■□□□ 1.04
SDF2-202ENST00000585428 ACIN1Q9UKV3 1341 aaKnown RBP21.55■■□□□ 1.04
SDF2-202ENST00000585428 PIK3C2GO75747 1445 aa21.55■■□□□ 1.04
SDF2-202ENST00000585428 ATAD2Q6PL18 1390 aa21.54■■□□□ 1.04
SDF2-202ENST00000585428 GJD4Q96KN9 370 aaPredicted RBP21.54■■□□□ 1.04
SDF2-202ENST00000585428 YTHDC2Q9H6S0 1430 aaKnown RBP21.54■■□□□ 1.04
SDF2-202ENST00000585428 SPATA31A3Q5VYP0 1347 aa21.54■■□□□ 1.04
SDF2-202ENST00000585428 KRT28Q7Z3Y7 464 aa21.53■■□□□ 1.04
SDF2-202ENST00000585428 CFAP70Q5T0N1 1121 aa21.51■■□□□ 1.03
SDF2-202ENST00000585428 CCDC125Q86Z20 511 aa21.49■■□□□ 1.03
SDF2-202ENST00000585428 UNC5CLQ8IV45 518 aa21.49■■□□□ 1.03
SDF2-202ENST00000585428 DHX57Q6P158 1386 aaKnown RBP21.48■■□□□ 1.03
SDF2-202ENST00000585428 PHF8Q9UPP1 1060 aa21.47■■□□□ 1.03
SDF2-202ENST00000585428 IFT172Q9UG01 1749 aa21.46■■□□□ 1.03
SDF2-202ENST00000585428 NRXN1Q9ULB1 1477 aa21.46■■□□□ 1.03
SDF2-202ENST00000585428 PSME1Q06323 249 aa21.46■■□□□ 1.03
SDF2-202ENST00000585428 PRAM1Q96QH2 718 aa21.45■■□□□ 1.02
SDF2-202ENST00000585428 SLIT2O94813 1529 aa21.44■■□□□ 1.02
SDF2-202ENST00000585428 SRCAPQ6ZRS2 3230 aa21.44■■□□□ 1.02
SDF2-202ENST00000585428 KNDC1Q76NI1 1749 aa21.43■■□□□ 1.02
SDF2-202ENST00000585428 EP400Q96L91 3159 aa21.41■■□□□ 1.02
SDF2-202ENST00000585428 ONECUT3O60422 494 aaPredicted RBP21.41■■□□□ 1.02
SDF2-202ENST00000585428 SAFB2Q14151 953 aaKnown RBP eCLIP21.41■■□□□ 1.02
SDF2-202ENST00000585428 CABLES1Q8TDN4 633 aa21.41■■□□□ 1.02
SDF2-202ENST00000585428 FMN2Q9NZ56 1722 aa21.41■■□□□ 1.02
SDF2-202ENST00000585428 SBNO1A3KN83 1393 aa21.4■■□□□ 1.02
SDF2-202ENST00000585428 ZRANB1Q9UGI0 708 aa21.4■■□□□ 1.02
SDF2-202ENST00000585428 RALGAPBQ86X10 1494 aa21.39■■□□□ 1.01
SDF2-202ENST00000585428 VPS72Q15906 364 aa21.38■■□□□ 1.01
SDF2-202ENST00000585428 POGKQ9P215 609 aa21.38■■□□□ 1.01
SDF2-202ENST00000585428 TNS3Q68CZ2 1445 aa21.38■■□□□ 1.01
SDF2-202ENST00000585428 FAM83GA6ND36 823 aa21.37■■□□□ 1.01
SDF2-202ENST00000585428 PMFBP1Q8TBY8 1022 aa21.37■■□□□ 1.01
SDF2-202ENST00000585428 MARF1Q9Y4F3 1742 aaKnown RBP21.37■■□□□ 1.01
SDF2-202ENST00000585428 HAP1P54257 671 aaPredicted RBP21.36■■□□□ 1.01
SDF2-202ENST00000585428 KIF1AQ12756 1690 aa21.36■■□□□ 1.01
SDF2-202ENST00000585428 RAB3GAP2Q9H2M9 1393 aa21.36■■□□□ 1.01
SDF2-202ENST00000585428 SEPT12Q8IYM1 358 aa21.35■■□□□ 1.01
SDF2-202ENST00000585428 TRAK1Q9UPV9 953 aa21.35■■□□□ 1.01
SDF2-202ENST00000585428 LMOD2Q6P5Q4 547 aa21.34■■□□□ 1.01
SDF2-202ENST00000585428 ARHGEF10O15013 1369 aa21.34■■□□□ 1.01
SDF2-202ENST00000585428 GLI3P10071 1580 aa21.33■■□□□ 1.01
SDF2-202ENST00000585428 STAC3Q96MF2 364 aa21.33■■□□□ 1.01
SDF2-202ENST00000585428 DLC1Q96QB1 1528 aa21.33■■□□□ 1
SDF2-202ENST00000585428 ANKARQ7Z5J8 1434 aa21.32■■□□□ 1
SDF2-202ENST00000585428 PLEKHG5O94827 1062 aa21.32■■□□□ 1
SDF2-202ENST00000585428 DCAF11Q8TEB1 546 aa21.32■■□□□ 1
SDF2-202ENST00000585428 KDM2AQ9Y2K7 1162 aa21.32■■□□□ 1
SDF2-202ENST00000585428 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.32■■□□□ 1
SDF2-202ENST00000585428 USP32Q8NFA0 1604 aa21.31■■□□□ 1
SDF2-202ENST00000585428 HIRIP3Q9BW71 556 aaPredicted RBP21.31■■□□□ 1
SDF2-202ENST00000585428 BLMP54132 1417 aaPredicted RBP21.3■■□□□ 1
SDF2-202ENST00000585428 ADGRB1O14514 1584 aa21.3■■□□□ 1
SDF2-202ENST00000585428 PRR36Q9H6K5 1346 aa21.29■■□□□ 1
SDF2-202ENST00000585428 RGPD8O14715 1765 aaPredicted RBP21.29■■□□□ 1
SDF2-202ENST00000585428 WASLO00401 505 aaPredicted RBP21.29■■□□□ 1
SDF2-202ENST00000585428 HRCP23327 699 aa21.29■■□□□ 1
SDF2-202ENST00000585428 MINK1Q8N4C8 1332 aaPredicted RBP21.28■■□□□ 1
SDF2-202ENST00000585428 KRT27Q7Z3Y8 459 aa21.27■■□□□ 1
SDF2-202ENST00000585428 DEFB132Q7Z7B7 95 aa21.27■■□□□ 1
SDF2-202ENST00000585428 CCDC9Q9Y3X0 531 aaKnown RBP21.27■■□□□ 1
SDF2-202ENST00000585428 GPRASP1Q5JY77 1395 aa21.25■□□□□ 0.99
SDF2-202ENST00000585428 BTG4Q9NY30 223 aa21.25■□□□□ 0.99
SDF2-202ENST00000585428 ADGRB2O60241 1585 aa21.23■□□□□ 0.99
SDF2-202ENST00000585428 SF3B2Q13435 895 aaKnown RBP21.23■□□□□ 0.99
SDF2-202ENST00000585428 EIF3AQ14152 1382 aaKnown RBP21.23■□□□□ 0.99
SDF2-202ENST00000585428 FAM98CQ17RN3 349 aaKnown RBP21.21■□□□□ 0.99
SDF2-202ENST00000585428 NGDNQ8NEJ9 315 aaKnown RBP21.21■□□□□ 0.99
SDF2-202ENST00000585428 NWD2Q9ULI1 1742 aa21.2■□□□□ 0.98
SDF2-202ENST00000585428 NUDT16Q96DE0 195 aaKnown RBP21.19■□□□□ 0.98
SDF2-202ENST00000585428 TULP4Q9NRJ4 1543 aa21.19■□□□□ 0.98
SDF2-202ENST00000585428 PAK3O75914 559 aaPredicted RBP21.18■□□□□ 0.98
SDF2-202ENST00000585428 BRWD3Q6RI45 1802 aa21.18■□□□□ 0.98
SDF2-202ENST00000585428 SPATA31A5Q5VU36 1347 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms