RNA–Protein interactions for RNA: ENST00000585428.1

SDF2-202, Transcript of stromal cell derived factor 2, humanhuman

TSL 1 (best)

Gene SDF2, Length 924 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-202ENST00000585428 NISCHQ9Y2I1 1504 aa36.44■■■■□ 3.42
SDF2-202ENST00000585428 ABCC9O60706 1549 aa32.84■■■□□ 2.85
SDF2-202ENST00000585428 CCDC180Q9P1Z9 1646 aa32.59■■■□□ 2.81
SDF2-202ENST00000585428 RB1CC1Q8TDY2 1594 aa31.16■■■□□ 2.58
SDF2-202ENST00000585428 DNAJC5BQ9UF47 199 aa31.12■■■□□ 2.57
SDF2-202ENST00000585428 NACADO15069 1562 aa30.96■■■□□ 2.55
SDF2-202ENST00000585428 DCAF8L2P0C7V8 631 aa30.9■■■□□ 2.54
SDF2-202ENST00000585428 PABPN1Q86U42 306 aaKnown RBP eCLIP30.67■■■□□ 2.5
SDF2-202ENST00000585428 MYO15BQ96JP2 1530 aa30.55■■■□□ 2.48
SDF2-202ENST00000585428 UNC13AQ9UPW8 1703 aa30.33■■■□□ 2.45
SDF2-202ENST00000585428 BICRAQ9NZM4 1560 aa30.3■■■□□ 2.44
SDF2-202ENST00000585428 ZCCHC6Q5VYS8 1495 aaKnown RBP30.12■■■□□ 2.41
SDF2-202ENST00000585428 DCAF1Q9Y4B6 1507 aa30.09■■■□□ 2.41
SDF2-202ENST00000585428 SHROOM4Q9ULL8 1493 aa29.87■■■□□ 2.37
SDF2-202ENST00000585428 SCRIBQ14160 1630 aa29.71■■■□□ 2.35
SDF2-202ENST00000585428 CC2D2AQ9P2K1 1620 aa29.62■■■□□ 2.33
SDF2-202ENST00000585428 CECR2Q9BXF3 1484 aa29.61■■■□□ 2.33
SDF2-202ENST00000585428 EIF4G1Q04637 1599 aaKnown RBP29.54■■■□□ 2.32
SDF2-202ENST00000585428 NCAPD3P42695 1498 aa28.68■■■□□ 2.18
SDF2-202ENST00000585428 DNAJC5Q9H3Z4 198 aa28.66■■■□□ 2.18
SDF2-202ENST00000585428 ATAD2BQ9ULI0 1458 aa28.53■■■□□ 2.16
SDF2-202ENST00000585428 SMARCA2P51531 1590 aa28.37■■■□□ 2.13
SDF2-202ENST00000585428 CUX2O14529 1486 aa28.36■■■□□ 2.13
SDF2-202ENST00000585428 SMARCA4P51532 1647 aa28.36■■■□□ 2.13
SDF2-202ENST00000585428 ERCC6Q03468 1493 aa28.33■■■□□ 2.13
SDF2-202ENST00000585428 HMGXB3Q12766 1538 aa28.33■■■□□ 2.13
SDF2-202ENST00000585428 BAZ1AQ9NRL2 1556 aaPredicted RBP28.24■■■□□ 2.11
SDF2-202ENST00000585428 NESP48681 1621 aa28.19■■■□□ 2.1
SDF2-202ENST00000585428 BAZ1BQ9UIG0 1483 aaKnown RBP28.18■■■□□ 2.1
SDF2-202ENST00000585428 PEG3Q9GZU2 1588 aa28.14■■■□□ 2.1
SDF2-202ENST00000585428 MROH2BQ7Z745 1585 aa28.07■■■□□ 2.08
SDF2-202ENST00000585428 LAMC3Q9Y6N6 1575 aa27.93■■■□□ 2.06
SDF2-202ENST00000585428 PDS5BQ9NTI5 1447 aa27.85■■■□□ 2.05
SDF2-202ENST00000585428 THOC2Q8NI27 1593 aaKnown RBP27.83■■■□□ 2.05
SDF2-202ENST00000585428 CADPSQ9ULU8 1353 aa27.81■■■□□ 2.04
SDF2-202ENST00000585428 KIF21AQ7Z4S6 1674 aa27.67■■■□□ 2.02
SDF2-202ENST00000585428 WIZO95785 1651 aa27.65■■■□□ 2.02
SDF2-202ENST00000585428 MRC2Q9UBG0 1479 aa27.56■■■□□ 2
SDF2-202ENST00000585428 RSF1Q96T23 1441 aaPredicted RBP27.5■■□□□ 1.99
SDF2-202ENST00000585428 WDR62O43379 1518 aa27.47■■□□□ 1.99
SDF2-202ENST00000585428 CFTRP13569 1480 aa27.43■■□□□ 1.98
SDF2-202ENST00000585428 FANCD2Q9BXW9 1451 aa27.41■■□□□ 1.98
SDF2-202ENST00000585428 AEBP2Q6ZN18 517 aaPredicted RBP27.41■■□□□ 1.98
SDF2-202ENST00000585428 CEP164Q9UPV0 1460 aa27.4■■□□□ 1.98
SDF2-202ENST00000585428 TOP2AP11388 1531 aaKnown RBP27.3■■□□□ 1.96
SDF2-202ENST00000585428 TRIM41Q8WV44 630 aa27.23■■□□□ 1.95
SDF2-202ENST00000585428 URB2Q14146 1524 aaKnown RBP27.2■■□□□ 1.94
SDF2-202ENST00000585428 OSCARQ8IYS5 282 aa27.19■■□□□ 1.94
SDF2-202ENST00000585428 CHIC1Q5VXU3 224 aa27.16■■□□□ 1.94
SDF2-202ENST00000585428 CCDC88BA6NC98 1476 aa27.1■■□□□ 1.93
SDF2-202ENST00000585428 IFT140Q96RY7 1462 aa26.91■■□□□ 1.9
SDF2-202ENST00000585428 ZNF608Q9ULD9 1512 aaPredicted RBP26.89■■□□□ 1.89
SDF2-202ENST00000585428 TOPBP1Q92547 1522 aa26.87■■□□□ 1.89
SDF2-202ENST00000585428 PRDM2Q13029 1718 aa26.86■■□□□ 1.89
SDF2-202ENST00000585428 ABCC8Q09428 1581 aa26.83■■□□□ 1.89
SDF2-202ENST00000585428 DNMBPQ6XZF7 1577 aa26.71■■□□□ 1.87
SDF2-202ENST00000585428 AQRO60306 1485 aaKnown RBP eCLIP26.68■■□□□ 1.862e-8■■■□□ 18.6
SDF2-202ENST00000585428 RIMBP3CA6NJZ7 1639 aa26.64■■□□□ 1.85
SDF2-202ENST00000585428 RIMBP3BA6NNM3 1639 aa26.64■■□□□ 1.85
SDF2-202ENST00000585428 RIMBP3Q9UFD9 1639 aa26.64■■□□□ 1.85
SDF2-202ENST00000585428 EIF4G3O43432 1585 aaKnown RBP26.61■■□□□ 1.85
SDF2-202ENST00000585428 TARBP1Q13395 1621 aaKnown RBP26.61■■□□□ 1.85
SDF2-202ENST00000585428 POLA1P09884 1462 aaPredicted RBP26.59■■□□□ 1.85
SDF2-202ENST00000585428 ARHGEF11O15085 1522 aa26.59■■□□□ 1.85
SDF2-202ENST00000585428 CYB5RLQ6IPT4 315 aa26.54■■□□□ 1.84
SDF2-202ENST00000585428 SOGA1O94964 1423 aa26.54■■□□□ 1.84
SDF2-202ENST00000585428 FBLN2P98095 1184 aa26.53■■□□□ 1.84
SDF2-202ENST00000585428 RAD54L2Q9Y4B4 1467 aa26.53■■□□□ 1.84
SDF2-202ENST00000585428 TDRD9Q8NDG6 1382 aaKnown RBP26.51■■□□□ 1.83
SDF2-202ENST00000585428 FGD5Q6ZNL6 1462 aa26.39■■□□□ 1.82
SDF2-202ENST00000585428 CHD1O14646 1710 aa26.39■■□□□ 1.81
SDF2-202ENST00000585428 CUX1P39880 1505 aa26.35■■□□□ 1.81
SDF2-202ENST00000585428 CHMP7Q8WUX9 453 aaPredicted RBP26.35■■□□□ 1.81
SDF2-202ENST00000585428 ARAP1Q96P48 1450 aa26.34■■□□□ 1.81
SDF2-202ENST00000585428 SNAPC4Q5SXM2 1469 aa26.31■■□□□ 1.8
SDF2-202ENST00000585428 WDR97A6NE52 1622 aa26.29■■□□□ 1.8
SDF2-202ENST00000585428 GRIN2BQ13224 1484 aa26.26■■□□□ 1.79
SDF2-202ENST00000585428 MAGI1Q96QZ7 1491 aaPredicted RBP26.25■■□□□ 1.79
SDF2-202ENST00000585428 TRHP20396 242 aaPredicted RBP26.24■■□□□ 1.79
SDF2-202ENST00000585428 CLASP1Q7Z460 1538 aa26.2■■□□□ 1.79
SDF2-202ENST00000585428 SUPT5HO00267 1087 aaKnown RBP26.2■■□□□ 1.78
SDF2-202ENST00000585428 SYNJ2O15056 1496 aa26.18■■□□□ 1.78
SDF2-202ENST00000585428 GAPVD1Q14C86 1478 aa26.17■■□□□ 1.78
SDF2-202ENST00000585428 SYNJ1O43426 1573 aa26.14■■□□□ 1.78
SDF2-202ENST00000585428 ABCA10Q8WWZ4 1543 aa26.11■■□□□ 1.77
SDF2-202ENST00000585428 WRNQ14191 1432 aaPredicted RBP eCLIP26.01■■□□□ 1.75
SDF2-202ENST00000585428 ABCA5Q8WWZ7 1642 aa25.99■■□□□ 1.75
SDF2-202ENST00000585428 PBRM1Q86U86 1689 aa25.97■■□□□ 1.75
SDF2-202ENST00000585428 GRIN2AQ12879 1464 aa25.91■■□□□ 1.74
SDF2-202ENST00000585428 NUP160Q12769 1436 aa25.87■■□□□ 1.73
SDF2-202ENST00000585428 TOP2BQ02880 1626 aa25.86■■□□□ 1.73
SDF2-202ENST00000585428 FHAD1B1AJZ9 1412 aa25.84■■□□□ 1.73
SDF2-202ENST00000585428 BIVM-ERCC5R4GMW8 1640 aa25.81■■□□□ 1.72
SDF2-202ENST00000585428 ERCC6L2Q5T890 1561 aa25.8■■□□□ 1.72
SDF2-202ENST00000585428 ADAMTS12P58397 1594 aa25.79■■□□□ 1.72
SDF2-202ENST00000585428 CEP170Q5SW79 1584 aa25.78■■□□□ 1.72
SDF2-202ENST00000585428 ERICH3Q5RHP9 1530 aa25.76■■□□□ 1.71
SDF2-202ENST00000585428 JPH4Q96JJ6 628 aa25.71■■□□□ 1.71
SDF2-202ENST00000585428 SHROOM2Q13796 1616 aa25.68■■□□□ 1.7
SDF2-202ENST00000585428 PRG4Q92954 1404 aaPredicted RBP25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms