RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 HSPA2P54652 639 aa18.87■□□□□ 0.61
CCDC40-209ENST00000573474 ROBO2Q9HCK4 1378 aa18.87■□□□□ 0.61
CCDC40-209ENST00000573474 PTCH1Q13635 1447 aa18.85■□□□□ 0.61
CCDC40-209ENST00000573474 ANP32CO43423 234 aa18.85■□□□□ 0.61
CCDC40-209ENST00000573474 TULP4Q9NRJ4 1543 aa18.84■□□□□ 0.61
CCDC40-209ENST00000573474 KCNA6P17658 529 aa18.82■□□□□ 0.6
CCDC40-209ENST00000573474 CDK19Q9BWU1 502 aa18.82■□□□□ 0.6
CCDC40-209ENST00000573474 PANK3Q9H999 370 aa18.82■□□□□ 0.6
CCDC40-209ENST00000573474 XRN1Q8IZH2 1706 aaKnown RBP18.82■□□□□ 0.6
CCDC40-209ENST00000573474 SRPK2P78362 688 aaKnown RBP18.81■□□□□ 0.6
CCDC40-209ENST00000573474 CABP2Q9NPB3 220 aa18.81■□□□□ 0.6
CCDC40-209ENST00000573474 WASLO00401 505 aaPredicted RBP18.8■□□□□ 0.6
CCDC40-209ENST00000573474 CHD2O14647 1828 aaKnown RBP18.79■□□□□ 0.6
CCDC40-209ENST00000573474 ATAD2Q6PL18 1390 aa18.79■□□□□ 0.6
CCDC40-209ENST00000573474 PER1O15534 1290 aaPredicted RBP18.77■□□□□ 0.6
CCDC40-209ENST00000573474 TMC1Q8TDI8 760 aa18.77■□□□□ 0.6
CCDC40-209ENST00000573474 NINLQ9Y2I6 1382 aa18.77■□□□□ 0.6
CCDC40-209ENST00000573474 MYOM1P52179 1685 aa18.76■□□□□ 0.59
CCDC40-209ENST00000573474 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.75■□□□□ 0.59
CCDC40-209ENST00000573474 SLC12A5Q9H2X9 1139 aa18.75■□□□□ 0.59
CCDC40-209ENST00000573474 ADGRB2O60241 1585 aa18.75■□□□□ 0.59
CCDC40-209ENST00000573474 NWD1Q149M9 1564 aa18.73■□□□□ 0.59
CCDC40-209ENST00000573474 PRKRIP1Q9H875 184 aaPredicted RBP18.73■□□□□ 0.59
CCDC40-209ENST00000573474 KNSTRNQ9Y448 316 aa18.73■□□□□ 0.59
CCDC40-209ENST00000573474 STRCQ7RTU9 1775 aa18.73■□□□□ 0.59
CCDC40-209ENST00000573474 CCER2I3L3R5 266 aa18.71■□□□□ 0.59
CCDC40-209ENST00000573474 NUDT16Q96DE0 195 aaKnown RBP18.71■□□□□ 0.59
CCDC40-209ENST00000573474 DMRT2Q9Y5R5 561 aa18.7■□□□□ 0.58
CCDC40-209ENST00000573474 ANKRD36BQ8N2N9 1353 aa18.69■□□□□ 0.58
CCDC40-209ENST00000573474 PROSER2Q86WR7 435 aaPredicted RBP18.69■□□□□ 0.58
CCDC40-209ENST00000573474 CARD14Q9BXL6 1004 aa18.69■□□□□ 0.58
CCDC40-209ENST00000573474 TERF2IPQ9NYB0 399 aa18.69■□□□□ 0.58
CCDC40-209ENST00000573474 CABP1Q9NZU7 370 aa18.69■□□□□ 0.58
CCDC40-209ENST00000573474 CCDC61Q9Y6R9 512 aa18.69■□□□□ 0.58
CCDC40-209ENST00000573474 NKTRP30414 1462 aaKnown RBP18.69■□□□□ 0.58
CCDC40-209ENST00000573474 KTN1Q86UP2 1357 aaKnown RBP18.68■□□□□ 0.58
CCDC40-209ENST00000573474 RALBP1Q15311 655 aa18.68■□□□□ 0.58
CCDC40-209ENST00000573474 HDGFL2Q7Z4V5 671 aaPredicted RBP18.67■□□□□ 0.58
CCDC40-209ENST00000573474 NPC1L1Q9UHC9 1359 aa18.67■□□□□ 0.58
CCDC40-209ENST00000573474 AMER1Q5JTC6 1135 aaPredicted RBP18.66■□□□□ 0.58
CCDC40-209ENST00000573474 PRR36Q9H6K5 1346 aa18.66■□□□□ 0.58
CCDC40-209ENST00000573474 PPIP5K1Q6PFW1 1433 aa18.66■□□□□ 0.58
CCDC40-209ENST00000573474 ADGRL3Q9HAR2 1447 aa18.66■□□□□ 0.58
CCDC40-209ENST00000573474 CNGB1Q14028 1251 aaPredicted RBP18.65■□□□□ 0.58
CCDC40-209ENST00000573474 NSD3Q9BZ95 1437 aa18.65■□□□□ 0.58
CCDC40-209ENST00000573474 ATP7BP35670 1465 aa18.65■□□□□ 0.58
CCDC40-209ENST00000573474 CC2D1BQ5T0F9 858 aaKnown RBP18.64■□□□□ 0.57
CCDC40-209ENST00000573474 C14orf37Q86TY3 774 aa18.64■□□□□ 0.57
CCDC40-209ENST00000573474 RBM33Q96EV2 1170 aaKnown RBP18.64■□□□□ 0.57
CCDC40-209ENST00000573474 A0A1W2PP64 1363 aa18.63■□□□□ 0.57
CCDC40-209ENST00000573474 ANKARQ7Z5J8 1434 aa18.63■□□□□ 0.57
CCDC40-209ENST00000573474 NCOA3Q9Y6Q9 1424 aa18.63■□□□□ 0.57
CCDC40-209ENST00000573474 CD163L1Q9NR16 1453 aa18.63■□□□□ 0.57
CCDC40-209ENST00000573474 PLEKHG3A1L390 1219 aa18.62■□□□□ 0.57
CCDC40-209ENST00000573474 PARD3Q8TEW0 1356 aa18.62■□□□□ 0.57
CCDC40-209ENST00000573474 CDC42BPGQ6DT37 1551 aa18.62■□□□□ 0.57
CCDC40-209ENST00000573474 NALCNQ8IZF0 1738 aa18.61■□□□□ 0.57
CCDC40-209ENST00000573474 NUTM2FA1L443 756 aa18.61■□□□□ 0.57
CCDC40-209ENST00000573474 CPSF1Q10570 1443 aaKnown RBP18.6■□□□□ 0.57
CCDC40-209ENST00000573474 CGNL1Q0VF96 1302 aa18.6■□□□□ 0.57
CCDC40-209ENST00000573474 ZNF692Q9BU19 519 aaPredicted RBP18.6■□□□□ 0.57
CCDC40-209ENST00000573474 C19orf44Q9H6X5 657 aa18.6■□□□□ 0.57
CCDC40-209ENST00000573474 STRCP1A6NGW2 1772 aa18.6■□□□□ 0.57
CCDC40-209ENST00000573474 TMEM94Q12767 1356 aa18.59■□□□□ 0.57
CCDC40-209ENST00000573474 MYBBP1AQ9BQG0 1328 aaKnown RBP18.59■□□□□ 0.57
CCDC40-209ENST00000573474 FMN2Q9NZ56 1722 aa18.58■□□□□ 0.57
CCDC40-209ENST00000573474 USP32Q8NFA0 1604 aa18.58■□□□□ 0.56
CCDC40-209ENST00000573474 TOPAZ1Q8N9V7 1692 aa18.57■□□□□ 0.56
CCDC40-209ENST00000573474 ZNF335Q9H4Z2 1342 aaPredicted RBP18.57■□□□□ 0.56
CCDC40-209ENST00000573474 NSD2O96028 1365 aa18.56■□□□□ 0.56
CCDC40-209ENST00000573474 ACEP12821 1306 aa18.55■□□□□ 0.56
CCDC40-209ENST00000573474 EDC4Q6P2E9 1401 aaKnown RBP18.55■□□□□ 0.56
CCDC40-209ENST00000573474 ITSN1Q15811 1721 aa18.54■□□□□ 0.56
CCDC40-209ENST00000573474 NLRP13Q86W25 1043 aa18.54■□□□□ 0.56
CCDC40-209ENST00000573474 ATF3P18847 181 aa18.53■□□□□ 0.56
CCDC40-209ENST00000573474 DCCP43146 1447 aa18.53■□□□□ 0.56
CCDC40-209ENST00000573474 MORC1Q86VD1 984 aa18.53■□□□□ 0.56
CCDC40-209ENST00000573474 NGDNQ8NEJ9 315 aaKnown RBP18.53■□□□□ 0.56
CCDC40-209ENST00000573474 PMFBP1Q8TBY8 1022 aa18.53■□□□□ 0.56
CCDC40-209ENST00000573474 MRS2Q9HD23 443 aa18.53■□□□□ 0.56
CCDC40-209ENST00000573474 LRRC7Q96NW7 1537 aa18.53■□□□□ 0.56
CCDC40-209ENST00000573474 POLR3AO14802 1390 aaPredicted RBP18.53■□□□□ 0.56
CCDC40-209ENST00000573474 FYB1O15117 783 aa18.52■□□□□ 0.56
CCDC40-209ENST00000573474 CCDC184Q52MB2 194 aa18.52■□□□□ 0.56
CCDC40-209ENST00000573474 BRD4O60885 1362 aaPredicted RBP18.52■□□□□ 0.55
CCDC40-209ENST00000573474 AKAP12Q02952 1782 aa18.51■□□□□ 0.55
CCDC40-209ENST00000573474 PPP2R1AP30153 589 aa18.51■□□□□ 0.55
CCDC40-209ENST00000573474 PHF8Q9UPP1 1060 aa18.51■□□□□ 0.55
CCDC40-209ENST00000573474 MSH6P52701 1360 aa18.51■□□□□ 0.55
CCDC40-209ENST00000573474 ESCO1Q5FWF5 840 aa18.5■□□□□ 0.55
CCDC40-209ENST00000573474 AEBP2Q6ZN18 517 aaPredicted RBP18.5■□□□□ 0.55
CCDC40-209ENST00000573474 CADPS2Q86UW7 1296 aa18.5■□□□□ 0.55
CCDC40-209ENST00000573474 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.5■□□□□ 0.55
CCDC40-209ENST00000573474 RGPD8O14715 1765 aaPredicted RBP18.5■□□□□ 0.55
CCDC40-209ENST00000573474 MON2Q7Z3U7 1717 aa18.49■□□□□ 0.55
CCDC40-209ENST00000573474 GGNBP2Q9H3C7 697 aa18.49■□□□□ 0.55
CCDC40-209ENST00000573474 USP6P35125 1406 aa18.49■□□□□ 0.55
CCDC40-209ENST00000573474 TTC21BQ7Z4L5 1316 aa18.48■□□□□ 0.55
CCDC40-209ENST00000573474 C1orf167Q5SNV9 1468 aa18.47■□□□□ 0.55
CCDC40-209ENST00000573474 SSH2Q76I76 1423 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms