RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 NPHP3Q7Z494 1330 aa24.8■■□□□ 1.56
CLK3-223ENST00000568488 MYOM2P54296 1465 aa24.79■■□□□ 1.56
CLK3-223ENST00000568488 NEXMIFQ5QGS0 1516 aa24.79■■□□□ 1.56
CLK3-223ENST00000568488 COL22A1Q8NFW1 1626 aaPredicted RBP24.79■■□□□ 1.56
CLK3-223ENST00000568488 SF3B2Q13435 895 aaKnown RBP24.78■■□□□ 1.56
CLK3-223ENST00000568488 BLMP54132 1417 aaPredicted RBP24.78■■□□□ 1.56
CLK3-223ENST00000568488 FOXO3O43524 673 aa24.77■■□□□ 1.56
CLK3-223ENST00000568488 VGFO15240 615 aaPredicted RBP24.76■■□□□ 1.55
CLK3-223ENST00000568488 UNC5CLQ8IV45 518 aa24.75■■□□□ 1.55
CLK3-223ENST00000568488 NUTM2FA1L443 756 aa24.73■■□□□ 1.55
CLK3-223ENST00000568488 CLTCL1P53675 1640 aa24.72■■□□□ 1.55
CLK3-223ENST00000568488 RALGAPBQ86X10 1494 aa24.71■■□□□ 1.55
CLK3-223ENST00000568488 HFM1A2PYH4 1435 aa24.71■■□□□ 1.55
CLK3-223ENST00000568488 PXDNQ92626 1479 aa24.7■■□□□ 1.54
CLK3-223ENST00000568488 MARF1Q9Y4F3 1742 aaKnown RBP24.69■■□□□ 1.54
CLK3-223ENST00000568488 SEPT12Q8IYM1 358 aa24.69■■□□□ 1.54
CLK3-223ENST00000568488 LRPPRCP42704 1394 aaKnown RBP24.68■■□□□ 1.54
CLK3-223ENST00000568488 GLI3P10071 1580 aa24.67■■□□□ 1.54
CLK3-223ENST00000568488 KIF1BO60333 1816 aa24.66■■□□□ 1.54
CLK3-223ENST00000568488 PSDA5PKW4 1024 aaPredicted RBP24.66■■□□□ 1.54
CLK3-223ENST00000568488 CCDC9Q9Y3X0 531 aaKnown RBP24.66■■□□□ 1.54
CLK3-223ENST00000568488 PLEKHG5O94827 1062 aa24.65■■□□□ 1.54
CLK3-223ENST00000568488 HAP1P54257 671 aaPredicted RBP24.65■■□□□ 1.54
CLK3-223ENST00000568488 SLIT2O94813 1529 aa24.64■■□□□ 1.53
CLK3-223ENST00000568488 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.62■■□□□ 1.53
CLK3-223ENST00000568488 STK26Q9P289 416 aa24.62■■□□□ 1.53
CLK3-223ENST00000568488 SPATA31A3Q5VYP0 1347 aa24.61■■□□□ 1.53
CLK3-223ENST00000568488 RPGRIP1LQ68CZ1 1315 aa24.61■■□□□ 1.53
CLK3-223ENST00000568488 PRAG1Q86YV5 1406 aa24.61■■□□□ 1.53
CLK3-223ENST00000568488 BRWD3Q6RI45 1802 aa24.61■■□□□ 1.53
CLK3-223ENST00000568488 KRT27Q7Z3Y8 459 aa24.61■■□□□ 1.53
CLK3-223ENST00000568488 WAPLQ7Z5K2 1190 aa24.61■■□□□ 1.53
CLK3-223ENST00000568488 LRP5O75197 1615 aa24.6■■□□□ 1.53
CLK3-223ENST00000568488 CDC42BPGQ6DT37 1551 aa24.59■■□□□ 1.53
CLK3-223ENST00000568488 A0A0G2JS52 829 aa24.59■■□□□ 1.53
CLK3-223ENST00000568488 MYT1Q01538 1121 aa24.59■■□□□ 1.53
CLK3-223ENST00000568488 VPS72Q15906 364 aa24.59■■□□□ 1.53
CLK3-223ENST00000568488 KRT28Q7Z3Y7 464 aa24.59■■□□□ 1.53
CLK3-223ENST00000568488 NAIPQ13075 1403 aa24.59■■□□□ 1.53
CLK3-223ENST00000568488 HRCP23327 699 aa24.58■■□□□ 1.53
CLK3-223ENST00000568488 BAG6P46379 1132 aa24.58■■□□□ 1.53
CLK3-223ENST00000568488 CABLES1Q8TDN4 633 aa24.57■■□□□ 1.52
CLK3-223ENST00000568488 ONECUT3O60422 494 aaPredicted RBP24.54■■□□□ 1.52
CLK3-223ENST00000568488 LMOD2Q6P5Q4 547 aa24.53■■□□□ 1.52
CLK3-223ENST00000568488 PPARGC1BQ86YN6 1023 aaKnown RBP24.53■■□□□ 1.52
CLK3-223ENST00000568488 USP32Q8NFA0 1604 aa24.52■■□□□ 1.52
CLK3-223ENST00000568488 CCDC144AA2RUR9 1427 aa24.51■■□□□ 1.51
CLK3-223ENST00000568488 EN1Q05925 392 aaPredicted RBP24.5■■□□□ 1.51
CLK3-223ENST00000568488 PSME1Q06323 249 aa24.5■■□□□ 1.51
CLK3-223ENST00000568488 TMEM132EQ6IEE7 984 aa24.49■■□□□ 1.51
CLK3-223ENST00000568488 PLEKHH1Q9ULM0 1364 aa24.49■■□□□ 1.51
CLK3-223ENST00000568488 R3HDM1Q15032 1099 aaKnown RBP24.48■■□□□ 1.51
CLK3-223ENST00000568488 FAM98CQ17RN3 349 aaKnown RBP24.48■■□□□ 1.51
CLK3-223ENST00000568488 ADGRF5Q8IZF2 1346 aa24.48■■□□□ 1.51
CLK3-223ENST00000568488 PPLO60437 1756 aa24.47■■□□□ 1.51
CLK3-223ENST00000568488 SLC4A1APQ9BWU0 796 aaKnown RBP24.46■■□□□ 1.51
CLK3-223ENST00000568488 PHF8Q9UPP1 1060 aa24.46■■□□□ 1.51
CLK3-223ENST00000568488 TNS3Q68CZ2 1445 aa24.45■■□□□ 1.51
CLK3-223ENST00000568488 FAM83GA6ND36 823 aa24.45■■□□□ 1.5
CLK3-223ENST00000568488 RGL3Q3MIN7 710 aa24.45■■□□□ 1.5
CLK3-223ENST00000568488 FAM182BQ5T319 152 aa24.44■■□□□ 1.5
CLK3-223ENST00000568488 KIF1AQ12756 1690 aa24.43■■□□□ 1.5
CLK3-223ENST00000568488 PLCH1Q4KWH8 1693 aa24.43■■□□□ 1.5
CLK3-223ENST00000568488 ABCC11Q96J66 1382 aa24.42■■□□□ 1.5
CLK3-223ENST00000568488 TECPR2O15040 1411 aa24.42■■□□□ 1.5
CLK3-223ENST00000568488 FMN2Q9NZ56 1722 aa24.41■■□□□ 1.5
CLK3-223ENST00000568488 NWD2Q9ULI1 1742 aa24.41■■□□□ 1.5
CLK3-223ENST00000568488 BTG4Q9NY30 223 aa24.4■■□□□ 1.5
CLK3-223ENST00000568488 RRBP1Q9P2E9 1410 aaKnown RBP24.39■■□□□ 1.5
CLK3-223ENST00000568488 SBNO1A3KN83 1393 aa24.38■■□□□ 1.49
CLK3-223ENST00000568488 EZH2Q15910 746 aaKnown RBP24.37■■□□□ 1.49
CLK3-223ENST00000568488 ARHGEF10O15013 1369 aa24.37■■□□□ 1.49
CLK3-223ENST00000568488 YY1P25490 414 aa24.35■■□□□ 1.49
CLK3-223ENST00000568488 PMFBP1Q8TBY8 1022 aa24.35■■□□□ 1.49
CLK3-223ENST00000568488 YTHDC2Q9H6S0 1430 aaKnown RBP24.34■■□□□ 1.49
CLK3-223ENST00000568488 RGPD8O14715 1765 aaPredicted RBP24.34■■□□□ 1.49
CLK3-223ENST00000568488 SAFB2Q14151 953 aaKnown RBP eCLIP24.33■■□□□ 1.49
CLK3-223ENST00000568488 ANKRD30BQ9BXX2 1392 aa24.32■■□□□ 1.48
CLK3-223ENST00000568488 RGPD1P0DJD0 1748 aa24.31■■□□□ 1.48
CLK3-223ENST00000568488 SIRT1Q96EB6 747 aa24.31■■□□□ 1.48
CLK3-223ENST00000568488 NRXN1Q9ULB1 1477 aa24.31■■□□□ 1.48
CLK3-223ENST00000568488 KNDC1Q76NI1 1749 aa24.3■■□□□ 1.48
CLK3-223ENST00000568488 ABCA3Q99758 1704 aa24.3■■□□□ 1.48
CLK3-223ENST00000568488 SPATA31A5Q5VU36 1347 aa24.29■■□□□ 1.48
CLK3-223ENST00000568488 SPATA31A7Q8IWB4 1347 aa24.29■■□□□ 1.48
CLK3-223ENST00000568488 TRIM37O94972 964 aa24.28■■□□□ 1.48
CLK3-223ENST00000568488 IFT172Q9UG01 1749 aa24.27■■□□□ 1.48
CLK3-223ENST00000568488 NRAPQ86VF7 1730 aa24.27■■□□□ 1.48
CLK3-223ENST00000568488 APBA3O96018 575 aa24.26■■□□□ 1.47
CLK3-223ENST00000568488 PRAM1Q96QH2 718 aa24.26■■□□□ 1.47
CLK3-223ENST00000568488 CAMKK2Q96RR4 588 aa24.26■■□□□ 1.47
CLK3-223ENST00000568488 DISP2A7MBM2 1401 aa24.25■■□□□ 1.47
CLK3-223ENST00000568488 PIK3C2GO75747 1445 aa24.25■■□□□ 1.47
CLK3-223ENST00000568488 POGKQ9P215 609 aa24.24■■□□□ 1.47
CLK3-223ENST00000568488 DHX57Q6P158 1386 aaKnown RBP24.24■■□□□ 1.47
CLK3-223ENST00000568488 SPATA31E1Q6ZUB1 1445 aa24.24■■□□□ 1.47
CLK3-223ENST00000568488 FAM196AQ6ZSG2 479 aa24.23■■□□□ 1.47
CLK3-223ENST00000568488 C14orf93Q9H972 538 aaKnown RBP24.23■■□□□ 1.47
CLK3-223ENST00000568488 COL14A1Q05707 1796 aaKnown RBP24.22■■□□□ 1.47
CLK3-223ENST00000568488 CFAP70Q5T0N1 1121 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms