RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 SIRT1Q96EB6 747 aa42.31■■■■■ 4.36
CTCF-203ENST00000566078 STRCQ7RTU9 1775 aa42.3■■■■■ 4.36
CTCF-203ENST00000566078 MINK1Q8N4C8 1332 aaPredicted RBP42.3■■■■■ 4.36
CTCF-203ENST00000566078 PTCH1Q13635 1447 aa42.29■■■■■ 4.36
CTCF-203ENST00000566078 AMOTL2Q9Y2J4 779 aa42.28■■■■■ 4.36
CTCF-203ENST00000566078 EVC2Q86UK5 1308 aa42.28■■■■■ 4.36
CTCF-203ENST00000566078 SIPA1L2Q9P2F8 1722 aaPredicted RBP42.25■■■■■ 4.35
CTCF-203ENST00000566078 ADGRB2O60241 1585 aa42.21■■■■■ 4.35
CTCF-203ENST00000566078 MIER1Q8N108 512 aa42.2■■■■■ 4.35
CTCF-203ENST00000566078 NWD1Q149M9 1564 aa42.19■■■■■ 4.35
CTCF-203ENST00000566078 KCNA6P17658 529 aa42.14■■■■■ 4.34
CTCF-203ENST00000566078 PUS7Q96PZ0 661 aaKnown RBP42.13■■■■■ 4.33
CTCF-203ENST00000566078 CABP2Q9NPB3 220 aa42.11■■■■■ 4.33
CTCF-203ENST00000566078 SRPK2P78362 688 aaKnown RBP42.09■■■■■ 4.33
CTCF-203ENST00000566078 ANP32CO43423 234 aa42.08■■■■■ 4.33
CTCF-203ENST00000566078 CDK19Q9BWU1 502 aa42.07■■■■■ 4.33
CTCF-203ENST00000566078 NALCNQ8IZF0 1738 aa42.07■■■■■ 4.32
CTCF-203ENST00000566078 PANK3Q9H999 370 aa42.06■■■■■ 4.32
CTCF-203ENST00000566078 STRCP1A6NGW2 1772 aa42.06■■■■■ 4.32
CTCF-203ENST00000566078 ATAD2Q6PL18 1390 aa42.04■■■■■ 4.32
CTCF-203ENST00000566078 WASLO00401 505 aaPredicted RBP42.02■■■■■ 4.32
CTCF-203ENST00000566078 TMC1Q8TDI8 760 aa42■■■■■ 4.31
CTCF-203ENST00000566078 NKTRP30414 1462 aaKnown RBP41.98■■■■■ 4.31
CTCF-203ENST00000566078 NINLQ9Y2I6 1382 aa41.97■■■■■ 4.31
CTCF-203ENST00000566078 TOPAZ1Q8N9V7 1692 aa41.95■■■■■ 4.31
CTCF-203ENST00000566078 SLC12A5Q9H2X9 1139 aa41.94■■■■■ 4.3
CTCF-203ENST00000566078 FMN2Q9NZ56 1722 aa41.94■■■■■ 4.3
CTCF-203ENST00000566078 PER1O15534 1290 aaPredicted RBP41.93■■■■■ 4.3
CTCF-203ENST00000566078 ITSN1Q15811 1721 aa41.92■■■■■ 4.3
CTCF-203ENST00000566078 RGPD8O14715 1765 aaPredicted RBP41.91■■■■■ 4.3
CTCF-203ENST00000566078 ATP7BP35670 1465 aa41.91■■■■■ 4.3
CTCF-203ENST00000566078 USP32Q8NFA0 1604 aa41.91■■■■■ 4.3
CTCF-203ENST00000566078 CDC42BPGQ6DT37 1551 aa41.9■■■■■ 4.3
CTCF-203ENST00000566078 PRKRIP1Q9H875 184 aaPredicted RBP41.87■■■■■ 4.29
CTCF-203ENST00000566078 ANKRD36BQ8N2N9 1353 aa41.86■■■■■ 4.29
CTCF-203ENST00000566078 ADGRL3Q9HAR2 1447 aa41.85■■■■■ 4.29
CTCF-203ENST00000566078 CNGB1Q14028 1251 aaPredicted RBP41.85■■■■■ 4.29
CTCF-203ENST00000566078 KNSTRNQ9Y448 316 aa41.84■■■■■ 4.29
CTCF-203ENST00000566078 PPIP5K1Q6PFW1 1433 aa41.83■■■■■ 4.29
CTCF-203ENST00000566078 AKAP12Q02952 1782 aa41.83■■■■■ 4.29
CTCF-203ENST00000566078 NUDT16Q96DE0 195 aaKnown RBP41.83■■■■■ 4.29
CTCF-203ENST00000566078 RBM33Q96EV2 1170 aaKnown RBP41.82■■■■■ 4.29
CTCF-203ENST00000566078 CD163L1Q9NR16 1453 aa41.82■■■■■ 4.29
CTCF-203ENST00000566078 NSD3Q9BZ95 1437 aa41.81■■■■■ 4.28
CTCF-203ENST00000566078 PRR36Q9H6K5 1346 aa41.8■■■■■ 4.28
CTCF-203ENST00000566078 A0A1W2PP64 1363 aa41.8■■■■■ 4.28
CTCF-203ENST00000566078 KTN1Q86UP2 1357 aaKnown RBP41.8■■■■■ 4.28
CTCF-203ENST00000566078 CARD14Q9BXL6 1004 aa41.8■■■■■ 4.28
CTCF-203ENST00000566078 PROSER2Q86WR7 435 aaPredicted RBP41.79■■■■■ 4.28
CTCF-203ENST00000566078 CABP1Q9NZU7 370 aa41.79■■■■■ 4.28
CTCF-203ENST00000566078 XIRP1Q702N8 1843 aaKnown RBP41.78■■■■■ 4.28
CTCF-203ENST00000566078 MON2Q7Z3U7 1717 aa41.77■■■■■ 4.28
CTCF-203ENST00000566078 TERF2IPQ9NYB0 399 aa41.74■■■■■ 4.27
CTCF-203ENST00000566078 CCDC61Q9Y6R9 512 aa41.74■■■■■ 4.27
CTCF-203ENST00000566078 NUTM2FA1L443 756 aa41.73■■■■■ 4.27
CTCF-203ENST00000566078 C14orf37Q86TY3 774 aa41.73■■■■■ 4.27
CTCF-203ENST00000566078 ANKARQ7Z5J8 1434 aa41.73■■■■■ 4.27
CTCF-203ENST00000566078 KIF20BQ96Q89 1820 aa41.73■■■■■ 4.27
CTCF-203ENST00000566078 CCER2I3L3R5 266 aa41.72■■■■■ 4.27
CTCF-203ENST00000566078 AMER1Q5JTC6 1135 aaPredicted RBP41.72■■■■■ 4.27
CTCF-203ENST00000566078 CC2D1BQ5T0F9 858 aaKnown RBP41.72■■■■■ 4.27
CTCF-203ENST00000566078 DMRT2Q9Y5R5 561 aa41.72■■■■■ 4.27
CTCF-203ENST00000566078 PARD3Q8TEW0 1356 aa41.7■■■■■ 4.27
CTCF-203ENST00000566078 HDGFL2Q7Z4V5 671 aaPredicted RBP41.7■■■■■ 4.27
CTCF-203ENST00000566078 NPC1L1Q9UHC9 1359 aa41.7■■■■■ 4.27
CTCF-203ENST00000566078 TMEM94Q12767 1356 aa41.67■■■■■ 4.26
CTCF-203ENST00000566078 RALBP1Q15311 655 aa41.67■■■■■ 4.26
CTCF-203ENST00000566078 ANKRD26Q9UPS8 1709 aa41.67■■■■■ 4.26
CTCF-203ENST00000566078 ZNF335Q9H4Z2 1342 aaPredicted RBP41.66■■■■■ 4.26
CTCF-203ENST00000566078 CPSF1Q10570 1443 aaKnown RBP41.65■■■■■ 4.26
CTCF-203ENST00000566078 NCOA3Q9Y6Q9 1424 aa41.64■■■■■ 4.26
CTCF-203ENST00000566078 NRKQ7Z2Y5 1582 aa41.61■■■■■ 4.25
CTCF-203ENST00000566078 CGNL1Q0VF96 1302 aa41.6■■■■■ 4.25
CTCF-203ENST00000566078 LRRC7Q96NW7 1537 aa41.6■■■■■ 4.25
CTCF-203ENST00000566078 MYBBP1AQ9BQG0 1328 aaKnown RBP41.58■■■■■ 4.25
CTCF-203ENST00000566078 PLEKHG3A1L390 1219 aa41.58■■■■■ 4.25
CTCF-203ENST00000566078 EDC4Q6P2E9 1401 aaKnown RBP41.55■■■■■ 4.24
CTCF-203ENST00000566078 C19orf44Q9H6X5 657 aa41.55■■■■■ 4.24
CTCF-203ENST00000566078 DCCP43146 1447 aa41.54■■■■■ 4.24
CTCF-203ENST00000566078 NSD2O96028 1365 aa41.54■■■■■ 4.24
CTCF-203ENST00000566078 ACEP12821 1306 aa41.53■■■■■ 4.24
CTCF-203ENST00000566078 PMFBP1Q8TBY8 1022 aa41.49■■■■■ 4.23
CTCF-203ENST00000566078 ZNF692Q9BU19 519 aaPredicted RBP41.49■■■■■ 4.23
CTCF-203ENST00000566078 POLR3AO14802 1390 aaPredicted RBP41.49■■■■■ 4.23
CTCF-203ENST00000566078 CCDC184Q52MB2 194 aa41.47■■■■■ 4.23
CTCF-203ENST00000566078 MSH6P52701 1360 aa41.47■■■■■ 4.23
CTCF-203ENST00000566078 USP6P35125 1406 aa41.46■■■■■ 4.23
CTCF-203ENST00000566078 KIF1AQ12756 1690 aa41.45■■■■■ 4.23
CTCF-203ENST00000566078 MRS2Q9HD23 443 aa41.44■■■■■ 4.22
CTCF-203ENST00000566078 ATF3P18847 181 aa41.44■■■■■ 4.22
CTCF-203ENST00000566078 SUGP2Q8IX01 1082 aaKnown RBP eCLIP41.43■■■■■ 4.22
CTCF-203ENST00000566078 NGDNQ8NEJ9 315 aaKnown RBP41.43■■■■■ 4.22
CTCF-203ENST00000566078 AEBP2Q6ZN18 517 aaPredicted RBP41.42■■■■■ 4.22
CTCF-203ENST00000566078 C1orf167Q5SNV9 1468 aa41.41■■■■■ 4.22
CTCF-203ENST00000566078 MST1RQ04912 1400 aa41.41■■■■■ 4.22
CTCF-203ENST00000566078 NLRP13Q86W25 1043 aa41.41■■■■■ 4.22
CTCF-203ENST00000566078 BRD4O60885 1362 aaPredicted RBP41.41■■■■■ 4.22
CTCF-203ENST00000566078 MORC1Q86VD1 984 aa41.4■■■■■ 4.22
CTCF-203ENST00000566078 PHF8Q9UPP1 1060 aa41.4■■■■■ 4.22
CTCF-203ENST00000566078 FYB1O15117 783 aa41.4■■■■■ 4.22
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms