RNA–Protein interactions for RNA: ENST00000562956.1

LINC00838-201, long intergenic non-protein coding RNA 838, humanhuman

TSL 1 (best) BASIC

Gene LINC00838, Length 2,936 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00838-201ENST00000562956 NLRP1Q9C000 1473 aa12.66□□□□□ -0.38
LINC00838-201ENST00000562956 SETD1AO15047 1707 aaKnown RBP12.66□□□□□ -0.38
LINC00838-201ENST00000562956 SRPK2P78362 688 aaKnown RBP12.65□□□□□ -0.38
LINC00838-201ENST00000562956 WAPLQ7Z5K2 1190 aa12.65□□□□□ -0.38
LINC00838-201ENST00000562956 ANP32EQ9BTT0 268 aa12.65□□□□□ -0.39
LINC00838-201ENST00000562956 C3P01024 1663 aa12.65□□□□□ -0.39
LINC00838-201ENST00000562956 ABCC11Q96J66 1382 aa12.64□□□□□ -0.39
LINC00838-201ENST00000562956 PLEKHH1Q9ULM0 1364 aa12.64□□□□□ -0.39
LINC00838-201ENST00000562956 LTKP29376 864 aa12.64□□□□□ -0.39
LINC00838-201ENST00000562956 FKBP8Q14318 412 aa12.64□□□□□ -0.39
LINC00838-201ENST00000562956 FER1L4A9Z1Z3 1794 aa12.63□□□□□ -0.39
LINC00838-201ENST00000562956 BCANQ96GW7 911 aa12.63□□□□□ -0.39
LINC00838-201ENST00000562956 DLC1Q96QB1 1528 aa12.63□□□□□ -0.39
LINC00838-201ENST00000562956 ANKRD36BQ8N2N9 1353 aa12.63□□□□□ -0.39
LINC00838-201ENST00000562956 CDK19Q9BWU1 502 aa12.62□□□□□ -0.39
LINC00838-201ENST00000562956 TXNDC2Q86VQ3 553 aa12.61□□□□□ -0.39
LINC00838-201ENST00000562956 TSHZ2Q9NRE2 1034 aa12.61□□□□□ -0.39
LINC00838-201ENST00000562956 ATAD2Q6PL18 1390 aa12.61□□□□□ -0.39
LINC00838-201ENST00000562956 ADAMTS8Q9UP79 889 aa12.61□□□□□ -0.39
LINC00838-201ENST00000562956 NEFLP07196 543 aa12.6□□□□□ -0.39
LINC00838-201ENST00000562956 ADAMTS13Q76LX8 1427 aa12.6□□□□□ -0.39
LINC00838-201ENST00000562956 PLEKHG1Q9ULL1 1385 aa12.6□□□□□ -0.39
LINC00838-201ENST00000562956 NINLQ9Y2I6 1382 aa12.6□□□□□ -0.39
LINC00838-201ENST00000562956 BLMP54132 1417 aaPredicted RBP12.6□□□□□ -0.39
LINC00838-201ENST00000562956 CGNL1Q0VF96 1302 aa12.6□□□□□ -0.39
LINC00838-201ENST00000562956 A0A1W2PP64 1363 aa12.59□□□□□ -0.39
LINC00838-201ENST00000562956 INSRP06213 1382 aa12.59□□□□□ -0.39
LINC00838-201ENST00000562956 MORC1Q86VD1 984 aa12.59□□□□□ -0.39
LINC00838-201ENST00000562956 SMG6Q86US8 1419 aaKnown RBP12.59□□□□□ -0.39
LINC00838-201ENST00000562956 SALL2Q9Y467 1007 aaPredicted RBP12.58□□□□□ -0.39
LINC00838-201ENST00000562956 TNNT2P45379 298 aaPredicted RBP12.58□□□□□ -0.4
LINC00838-201ENST00000562956 EID1Q9Y6B2 187 aa12.58□□□□□ -0.4
LINC00838-201ENST00000562956 TECPR2O15040 1411 aa12.58□□□□□ -0.4
LINC00838-201ENST00000562956 USP32Q8NFA0 1604 aa12.58□□□□□ -0.4
LINC00838-201ENST00000562956 WDR43Q15061 677 aaKnown RBP eCLIP12.58□□□□□ -0.4
LINC00838-201ENST00000562956 CD163L1Q9NR16 1453 aa12.57□□□□□ -0.4
LINC00838-201ENST00000562956 ARHGAP23Q9P227 1491 aa12.57□□□□□ -0.4
LINC00838-201ENST00000562956 SLIT1O75093 1534 aa12.57□□□□□ -0.4
LINC00838-201ENST00000562956 CABP1Q9NZU7 370 aa12.57□□□□□ -0.4
LINC00838-201ENST00000562956 SLC26A8Q96RN1 970 aa12.57□□□□□ -0.4
LINC00838-201ENST00000562956 NUDCQ9Y266 331 aa12.57□□□□□ -0.4
LINC00838-201ENST00000562956 FAM135BQ49AJ0 1406 aa12.57□□□□□ -0.4
LINC00838-201ENST00000562956 THEMISQ8N1K5 641 aaPredicted RBP12.56□□□□□ -0.4
LINC00838-201ENST00000562956 SIRT1Q96EB6 747 aa12.56□□□□□ -0.4
LINC00838-201ENST00000562956 TERF2IPQ9NYB0 399 aa12.56□□□□□ -0.4
LINC00838-201ENST00000562956 MED14O60244 1454 aa12.55□□□□□ -0.4
LINC00838-201ENST00000562956 ROBO2Q9HCK4 1378 aa12.55□□□□□ -0.4
LINC00838-201ENST00000562956 WASLO00401 505 aaPredicted RBP12.55□□□□□ -0.4
LINC00838-201ENST00000562956 CPS1P31327 1500 aa12.55□□□□□ -0.4
LINC00838-201ENST00000562956 IRX6P78412 446 aaPredicted RBP12.55□□□□□ -0.4
LINC00838-201ENST00000562956 NSD2O96028 1365 aa12.54□□□□□ -0.4
LINC00838-201ENST00000562956 KNDC1Q76NI1 1749 aa12.54□□□□□ -0.4
LINC00838-201ENST00000562956 RIMS1Q86UR5 1692 aaKnown RBP12.54□□□□□ -0.4
LINC00838-201ENST00000562956 POLR3AO14802 1390 aaPredicted RBP12.53□□□□□ -0.4
LINC00838-201ENST00000562956 HDGFL2Q7Z4V5 671 aaPredicted RBP12.53□□□□□ -0.4
LINC00838-201ENST00000562956 PTPRUQ92729 1446 aa12.53□□□□□ -0.4
LINC00838-201ENST00000562956 GGNBP2Q9H3C7 697 aa12.52□□□□□ -0.4
LINC00838-201ENST00000562956 FYB1O15117 783 aa12.52□□□□□ -0.41
LINC00838-201ENST00000562956 MTHFSP49914 203 aa12.51□□□□□ -0.41
LINC00838-201ENST00000562956 TBX22Q9Y458 520 aa12.51□□□□□ -0.41
LINC00838-201ENST00000562956 CCDC146Q8IYE0 955 aa12.51□□□□□ -0.41
LINC00838-201ENST00000562956 CDCA7LQ96GN5 454 aa12.51□□□□□ -0.41
LINC00838-201ENST00000562956 CEP170BQ9Y4F5 1589 aaPredicted RBP12.51□□□□□ -0.41
LINC00838-201ENST00000562956 NCKAP5LQ9HCH0 1330 aa12.51□□□□□ -0.41
LINC00838-201ENST00000562956 ADAMTSL3P82987 1691 aa12.5□□□□□ -0.41
LINC00838-201ENST00000562956 PDE3BQ13370 1112 aa12.5□□□□□ -0.41
LINC00838-201ENST00000562956 NUDT16Q96DE0 195 aaKnown RBP12.5□□□□□ -0.41
LINC00838-201ENST00000562956 AMOTL2Q9Y2J4 779 aa12.5□□□□□ -0.41
LINC00838-201ENST00000562956 PPIP5K1Q6PFW1 1433 aa12.5□□□□□ -0.41
LINC00838-201ENST00000562956 ATP7BP35670 1465 aa12.49□□□□□ -0.41
LINC00838-201ENST00000562956 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.48□□□□□ -0.41
LINC00838-201ENST00000562956 PRR36Q9H6K5 1346 aa12.48□□□□□ -0.41
LINC00838-201ENST00000562956 CPSF1Q10570 1443 aaKnown RBP12.48□□□□□ -0.41
LINC00838-201ENST00000562956 CCDC61Q9Y6R9 512 aa12.48□□□□□ -0.41
LINC00838-201ENST00000562956 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.47□□□□□ -0.41
LINC00838-201ENST00000562956 RNF123Q5XPI4 1314 aa12.47□□□□□ -0.41
LINC00838-201ENST00000562956 APAF1O14727 1248 aa12.46□□□□□ -0.41
LINC00838-201ENST00000562956 CFAP53Q96M91 514 aa12.46□□□□□ -0.41
LINC00838-201ENST00000562956 ZNF521Q96K83 1311 aa12.46□□□□□ -0.41
LINC00838-201ENST00000562956 DIP2AQ14689 1571 aa12.46□□□□□ -0.41
LINC00838-201ENST00000562956 SHPRHQ149N8 1683 aa12.46□□□□□ -0.41
LINC00838-201ENST00000562956 PTCH1Q13635 1447 aa12.45□□□□□ -0.42
LINC00838-201ENST00000562956 ADGRB2O60241 1585 aa12.45□□□□□ -0.42
LINC00838-201ENST00000562956 NUTM2FA1L443 756 aa12.45□□□□□ -0.42
LINC00838-201ENST00000562956 EDC4Q6P2E9 1401 aaKnown RBP12.45□□□□□ -0.42
LINC00838-201ENST00000562956 ANKLE2Q86XL3 938 aa12.44□□□□□ -0.42
LINC00838-201ENST00000562956 CDC42BPGQ6DT37 1551 aa12.44□□□□□ -0.42
LINC00838-201ENST00000562956 KCNA6P17658 529 aa12.43□□□□□ -0.42
LINC00838-201ENST00000562956 NME9Q86XW9 330 aa12.43□□□□□ -0.42
LINC00838-201ENST00000562956 RCAN3Q9UKA8 241 aa12.43□□□□□ -0.42
LINC00838-201ENST00000562956 FBLN1P23142 703 aa12.43□□□□□ -0.42
LINC00838-201ENST00000562956 ERICH6BQ5W0A0 696 aa12.43□□□□□ -0.42
LINC00838-201ENST00000562956 ANKRD26Q9UPS8 1709 aa12.43□□□□□ -0.42
LINC00838-201ENST00000562956 ZNF142P52746 1687 aaPredicted RBP12.43□□□□□ -0.42
LINC00838-201ENST00000562956 ZRANB1Q9UGI0 708 aa12.42□□□□□ -0.42
LINC00838-201ENST00000562956 KIF20BQ96Q89 1820 aa12.42□□□□□ -0.42
LINC00838-201ENST00000562956 GOLGA2Q08379 1002 aa12.41□□□□□ -0.42
LINC00838-201ENST00000562956 XRN1Q8IZH2 1706 aaKnown RBP12.41□□□□□ -0.42
LINC00838-201ENST00000562956 RUNDC1Q96C34 613 aa12.41□□□□□ -0.42
LINC00838-201ENST00000562956 ZNF692Q9BU19 519 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms