RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 PRAG1Q86YV5 1406 aa15.05■□□□□ -0
LDLR-214ENST00000560628 PIK3C2GO75747 1445 aa15.04■□□□□ -0
LDLR-214ENST00000560628 KDM2AQ9Y2K7 1162 aa15.04■□□□□ -0
LDLR-214ENST00000560628 SHPRHQ149N8 1683 aa15.03■□□□□ -0
LDLR-214ENST00000560628 PNPLA6Q8IY17 1366 aa15.03■□□□□ -0
LDLR-214ENST00000560628 SOS2Q07890 1332 aaPredicted RBP15.03■□□□□ -0
LDLR-214ENST00000560628 ADAMTS2O95450 1211 aa15.03■□□□□ -0
LDLR-214ENST00000560628 C8orf37Q96NL8 207 aa15.03■□□□□ -0
LDLR-214ENST00000560628 NHSL1Q5SYE7 1610 aa15.03■□□□□ -0
LDLR-214ENST00000560628 YTHDC2Q9H6S0 1430 aaKnown RBP15.02■□□□□ -0
LDLR-214ENST00000560628 AFF2P51816 1311 aa15.02■□□□□ -0
LDLR-214ENST00000560628 FOXO3O43524 673 aa15.02■□□□□ -0
LDLR-214ENST00000560628 XPCQ01831 940 aaPredicted RBP15.02■□□□□ -0
LDLR-214ENST00000560628 SAFB2Q14151 953 aaKnown RBP eCLIP15.02■□□□□ -0
LDLR-214ENST00000560628 HRCP23327 699 aa15.01□□□□□ -0.01
LDLR-214ENST00000560628 RXRBP28702 533 aa15.01□□□□□ -0.01
LDLR-214ENST00000560628 TECPR2O15040 1411 aa15□□□□□ -0.01
LDLR-214ENST00000560628 IFT172Q9UG01 1749 aa15□□□□□ -0.01
LDLR-214ENST00000560628 DHX57Q6P158 1386 aaKnown RBP15□□□□□ -0.01
LDLR-214ENST00000560628 DCAF11Q8TEB1 546 aa15□□□□□ -0.01
LDLR-214ENST00000560628 SIRT1Q96EB6 747 aa15□□□□□ -0.01
LDLR-214ENST00000560628 NGLY1Q96IV0 654 aa15□□□□□ -0.01
LDLR-214ENST00000560628 PRAM1Q96QH2 718 aa14.99□□□□□ -0.01
LDLR-214ENST00000560628 NPHP3Q7Z494 1330 aa14.98□□□□□ -0.01
LDLR-214ENST00000560628 QTRT2Q9H974 415 aaKnown RBP14.98□□□□□ -0.01
LDLR-214ENST00000560628 POGKQ9P215 609 aa14.98□□□□□ -0.01
LDLR-214ENST00000560628 MYOM2P54296 1465 aa14.96□□□□□ -0.01
LDLR-214ENST00000560628 NRXN1Q9ULB1 1477 aa14.96□□□□□ -0.01
LDLR-214ENST00000560628 CDC42BPGQ6DT37 1551 aa14.96□□□□□ -0.01
LDLR-214ENST00000560628 TRAK1Q9UPV9 953 aa14.96□□□□□ -0.01
LDLR-214ENST00000560628 KRT28Q7Z3Y7 464 aa14.94□□□□□ -0.02
LDLR-214ENST00000560628 LAMC1P11047 1609 aa14.93□□□□□ -0.02
LDLR-214ENST00000560628 USP21Q9UK80 565 aa14.93□□□□□ -0.02
LDLR-214ENST00000560628 PHF8Q9UPP1 1060 aa14.93□□□□□ -0.02
LDLR-214ENST00000560628 PLEKHG5O94827 1062 aa14.92□□□□□ -0.02
LDLR-214ENST00000560628 RBM6P78332 1123 aaKnown RBP14.92□□□□□ -0.02
LDLR-214ENST00000560628 HIRIP3Q9BW71 556 aaPredicted RBP14.92□□□□□ -0.02
LDLR-214ENST00000560628 PXDNQ92626 1479 aa14.91□□□□□ -0.02
LDLR-214ENST00000560628 KNDC1Q76NI1 1749 aa14.91□□□□□ -0.02
LDLR-214ENST00000560628 MINK1Q8N4C8 1332 aaPredicted RBP14.91□□□□□ -0.02
LDLR-214ENST00000560628 FNBP4Q8N3X1 1017 aaPredicted RBP14.9□□□□□ -0.02
LDLR-214ENST00000560628 PMFBP1Q8TBY8 1022 aa14.9□□□□□ -0.02
LDLR-214ENST00000560628 UPF1Q92900 1129 aaKnown RBP eCLIP14.9□□□□□ -0.022e-8■■■■■ 31.2
LDLR-214ENST00000560628 STAC3Q96MF2 364 aa14.9□□□□□ -0.02
LDLR-214ENST00000560628 SPATA31A3Q5VYP0 1347 aa14.9□□□□□ -0.02
LDLR-214ENST00000560628 PSME1Q06323 249 aa14.89□□□□□ -0.03
LDLR-214ENST00000560628 LMOD2Q6P5Q4 547 aa14.88□□□□□ -0.03
LDLR-214ENST00000560628 TRPC5Q9UL62 973 aaPredicted RBP14.88□□□□□ -0.03
LDLR-214ENST00000560628 FMN2Q9NZ56 1722 aa14.87□□□□□ -0.03
LDLR-214ENST00000560628 CABLES1Q8TDN4 633 aa14.87□□□□□ -0.03
LDLR-214ENST00000560628 ADGRB1O14514 1584 aa14.86□□□□□ -0.03
LDLR-214ENST00000560628 DLC1Q96QB1 1528 aa14.86□□□□□ -0.03
LDLR-214ENST00000560628 CDK12Q9NYV4 1490 aaPredicted RBP14.85□□□□□ -0.03
LDLR-214ENST00000560628 WASLO00401 505 aaPredicted RBP14.85□□□□□ -0.03
LDLR-214ENST00000560628 HAP1P54257 671 aaPredicted RBP14.85□□□□□ -0.03
LDLR-214ENST00000560628 RGS12O14924 1447 aa14.84□□□□□ -0.03
LDLR-214ENST00000560628 RGPD8O14715 1765 aaPredicted RBP14.84□□□□□ -0.03
LDLR-214ENST00000560628 PRR36Q9H6K5 1346 aa14.84□□□□□ -0.03
LDLR-214ENST00000560628 COL22A1Q8NFW1 1626 aaPredicted RBP14.84□□□□□ -0.03
LDLR-214ENST00000560628 NBPF1Q3BBV0 1214 aa14.83□□□□□ -0.04
LDLR-214ENST00000560628 ANKARQ7Z5J8 1434 aa14.82□□□□□ -0.04
LDLR-214ENST00000560628 BCL9LQ86UU0 1499 aa14.82□□□□□ -0.04
LDLR-214ENST00000560628 KIF1AQ12756 1690 aa14.81□□□□□ -0.04
LDLR-214ENST00000560628 NGDNQ8NEJ9 315 aaKnown RBP14.81□□□□□ -0.04
LDLR-214ENST00000560628 SBNO1A3KN83 1393 aa14.81□□□□□ -0.04
LDLR-214ENST00000560628 ATRNO75882 1429 aa14.81□□□□□ -0.04
LDLR-214ENST00000560628 TNS3Q68CZ2 1445 aa14.81□□□□□ -0.04
LDLR-214ENST00000560628 UNC5CLQ8IV45 518 aa14.8□□□□□ -0.04
LDLR-214ENST00000560628 NUDT16Q96DE0 195 aaKnown RBP14.8□□□□□ -0.04
LDLR-214ENST00000560628 GJD4Q96KN9 370 aaPredicted RBP14.8□□□□□ -0.04
LDLR-214ENST00000560628 SIN3AQ96ST3 1273 aa14.8□□□□□ -0.04
LDLR-214ENST00000560628 PAK3O75914 559 aaPredicted RBP14.79□□□□□ -0.04
LDLR-214ENST00000560628 GPRASP1Q5JY77 1395 aa14.79□□□□□ -0.04
LDLR-214ENST00000560628 CDK19Q9BWU1 502 aa14.79□□□□□ -0.04
LDLR-214ENST00000560628 EIF3AQ14152 1382 aaKnown RBP14.78□□□□□ -0.04
LDLR-214ENST00000560628 NEUROD1Q13562 356 aa14.78□□□□□ -0.04
LDLR-214ENST00000560628 USP32Q8NFA0 1604 aa14.77□□□□□ -0.04
LDLR-214ENST00000560628 ARHGEF10O15013 1369 aa14.77□□□□□ -0.04
LDLR-214ENST00000560628 FAM83GA6ND36 823 aa14.77□□□□□ -0.05
LDLR-214ENST00000560628 L3MBTL2Q969R5 705 aa14.77□□□□□ -0.05
LDLR-214ENST00000560628 ADGRB2O60241 1585 aa14.77□□□□□ -0.05
LDLR-214ENST00000560628 CCDC9Q9Y3X0 531 aaKnown RBP14.76□□□□□ -0.05
LDLR-214ENST00000560628 SLIT2O94813 1529 aa14.75□□□□□ -0.05
LDLR-214ENST00000560628 TULP4Q9NRJ4 1543 aa14.75□□□□□ -0.05
LDLR-214ENST00000560628 ATAD2Q6PL18 1390 aa14.73□□□□□ -0.05
LDLR-214ENST00000560628 MARF1Q9Y4F3 1742 aaKnown RBP14.73□□□□□ -0.05
LDLR-214ENST00000560628 CCDC61Q9Y6R9 512 aa14.73□□□□□ -0.05
LDLR-214ENST00000560628 RALGAPBQ86X10 1494 aa14.72□□□□□ -0.05
LDLR-214ENST00000560628 VPS72Q15906 364 aa14.72□□□□□ -0.05
LDLR-214ENST00000560628 NBPF8Q3BBV2 869 aa14.72□□□□□ -0.05
LDLR-214ENST00000560628 NUTM2GQ5VZR2 741 aa14.72□□□□□ -0.05
LDLR-214ENST00000560628 ARHGEF28Q8N1W1 1705 aaKnown RBP14.72□□□□□ -0.05
LDLR-214ENST00000560628 ACEP12821 1306 aa14.71□□□□□ -0.05
LDLR-214ENST00000560628 SRPK2P78362 688 aaKnown RBP14.71□□□□□ -0.05
LDLR-214ENST00000560628 SEPT12Q8IYM1 358 aa14.71□□□□□ -0.05
LDLR-214ENST00000560628 BTG4Q9NY30 223 aa14.71□□□□□ -0.05
LDLR-214ENST00000560628 CENPJQ9HC77 1338 aaPredicted RBP14.7□□□□□ -0.06
LDLR-214ENST00000560628 CABP2Q9NPB3 220 aa14.7□□□□□ -0.06
LDLR-214ENST00000560628 ATP7BP35670 1465 aa14.69□□□□□ -0.06
LDLR-214ENST00000560628 PLEKHG3A1L390 1219 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms