RNA–Protein interactions for RNA: ENST00000560307.5

SNRPA1-209, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 2

Gene SNRPA1, Length 433 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-209ENST00000560307 SMAPO00193 183 aa8.36□□□□□ -1.07
SNRPA1-209ENST00000560307 NEFLP07196 543 aa8.36□□□□□ -1.07
SNRPA1-209ENST00000560307 APLP1P51693 650 aa8.36□□□□□ -1.07
SNRPA1-209ENST00000560307 NFX1Q12986 1120 aaKnown RBP8.36□□□□□ -1.07
SNRPA1-209ENST00000560307 MAP2K5Q13163 448 aa8.36□□□□□ -1.07
SNRPA1-209ENST00000560307 EPAS1Q99814 870 aa8.36□□□□□ -1.07
SNRPA1-209ENST00000560307 RBM19Q9Y4C8 960 aaKnown RBP8.36□□□□□ -1.07
SNRPA1-209ENST00000560307 BIVM-ERCC5R4GMW8 1640 aa8.36□□□□□ -1.07
SNRPA1-209ENST00000560307 MAP3K1Q13233 1512 aa8.35□□□□□ -1.07
SNRPA1-209ENST00000560307 CCER2I3L3R5 266 aa8.35□□□□□ -1.07
SNRPA1-209ENST00000560307 ZNF697Q5TEC3 545 aa8.35□□□□□ -1.07
SNRPA1-209ENST00000560307 DDRGK1Q96HY6 314 aa8.35□□□□□ -1.07
SNRPA1-209ENST00000560307 TSKSQ9UJT2 592 aa8.35□□□□□ -1.07
SNRPA1-209ENST00000560307 IRF6O14896 467 aa8.34□□□□□ -1.07
SNRPA1-209ENST00000560307 ERICH6BQ5W0A0 696 aa8.34□□□□□ -1.07
SNRPA1-209ENST00000560307 RNF223E7ERA6 249 aa8.33□□□□□ -1.08
SNRPA1-209ENST00000560307 GNPATO15228 680 aa8.33□□□□□ -1.08
SNRPA1-209ENST00000560307 TTLL12Q14166 644 aaPredicted RBP8.33□□□□□ -1.08
SNRPA1-209ENST00000560307 SUZ12Q15022 739 aaKnown RBP8.33□□□□□ -1.08
SNRPA1-209ENST00000560307 DDX12PQ92771 950 aa8.33□□□□□ -1.08
SNRPA1-209ENST00000560307 TOP2BQ02880 1626 aa8.32□□□□□ -1.08
SNRPA1-209ENST00000560307 ARAP1Q96P48 1450 aa8.32□□□□□ -1.08
SNRPA1-209ENST00000560307 FAM181BA6NEQ2 426 aa8.32□□□□□ -1.08
SNRPA1-209ENST00000560307 PARP9Q8IXQ6 854 aa8.32□□□□□ -1.08
SNRPA1-209ENST00000560307 EMID1Q96A84 441 aaPredicted RBP8.32□□□□□ -1.08
SNRPA1-209ENST00000560307 GMPR2Q9P2T1 348 aaKnown RBP8.32□□□□□ -1.08
SNRPA1-209ENST00000560307 MAPKBP1O60336 1514 aa8.32□□□□□ -1.08
SNRPA1-209ENST00000560307 PLEKHG3A1L390 1219 aa8.31□□□□□ -1.08
SNRPA1-209ENST00000560307 FCHSD2O94868 740 aa8.31□□□□□ -1.08
SNRPA1-209ENST00000560307 PODXL2Q9NZ53 605 aa8.31□□□□□ -1.08
SNRPA1-209ENST00000560307 UNC13AQ9UPW8 1703 aa8.31□□□□□ -1.08
SNRPA1-209ENST00000560307 RAPGEF2Q9Y4G8 1499 aa8.31□□□□□ -1.08
SNRPA1-209ENST00000560307 OSBPP22059 807 aa8.3□□□□□ -1.08
SNRPA1-209ENST00000560307 FECHP22830 423 aa8.3□□□□□ -1.08
SNRPA1-209ENST00000560307 HDGFP51858 240 aaKnown RBP8.3□□□□□ -1.08
SNRPA1-209ENST00000560307 HIC1Q14526 733 aa8.3□□□□□ -1.08
SNRPA1-209ENST00000560307 DACH1Q9UI36 760 aa8.3□□□□□ -1.08
SNRPA1-209ENST00000560307 ZPR1O75312 459 aa8.29□□□□□ -1.08
SNRPA1-209ENST00000560307 AMHR2Q16671 573 aa8.29□□□□□ -1.08
SNRPA1-209ENST00000560307 PRXQ9BXM0 1461 aa8.29□□□□□ -1.08
SNRPA1-209ENST00000560307 CCNB3Q8WWL7 1395 aa8.28□□□□□ -1.08
SNRPA1-209ENST00000560307 ARID3CA6NKF2 412 aa8.28□□□□□ -1.08
SNRPA1-209ENST00000560307 GDF9O60383 454 aa8.28□□□□□ -1.08
SNRPA1-209ENST00000560307 ATP1B4Q9UN42 357 aaPredicted RBP8.27□□□□□ -1.09
SNRPA1-209ENST00000560307 FLIIQ13045 1269 aa8.26□□□□□ -1.09
SNRPA1-209ENST00000560307 PNMA3Q9UL41 463 aa8.26□□□□□ -1.09
SNRPA1-209ENST00000560307 NBPF26B4DH59 902 aa8.25□□□□□ -1.09
SNRPA1-209ENST00000560307 APBB1O00213 710 aa8.25□□□□□ -1.09
SNRPA1-209ENST00000560307 MAP3K7O43318 606 aa8.25□□□□□ -1.09
SNRPA1-209ENST00000560307 LIAT1Q6ZQX7 453 aa8.25□□□□□ -1.09
SNRPA1-209ENST00000560307 NECTIN2Q92692 538 aa8.25□□□□□ -1.09
SNRPA1-209ENST00000560307 CFAP43Q8NDM7 1665 aa8.24□□□□□ -1.09
SNRPA1-209ENST00000560307 PPEF1O14829 653 aaPredicted RBP8.24□□□□□ -1.09
SNRPA1-209ENST00000560307 AXIN1O15169 862 aa8.24□□□□□ -1.09
SNRPA1-209ENST00000560307 PPP1R15AO75807 674 aaPredicted RBP8.24□□□□□ -1.09
SNRPA1-209ENST00000560307 TSR1Q2NL82 804 aaKnown RBP8.24□□□□□ -1.09
SNRPA1-209ENST00000560307 GIGYF2Q6Y7W6 1299 aaKnown RBP8.24□□□□□ -1.09
SNRPA1-209ENST00000560307 CDCA7LQ96GN5 454 aa8.24□□□□□ -1.09
SNRPA1-209ENST00000560307 PCMTD1Q96MG8 357 aaPredicted RBP8.24□□□□□ -1.09
SNRPA1-209ENST00000560307 WDR97A6NE52 1622 aa8.24□□□□□ -1.09
SNRPA1-209ENST00000560307 TIAM1Q13009 1591 aa8.23□□□□□ -1.09
SNRPA1-209ENST00000560307 FOXC1Q12948 553 aa8.23□□□□□ -1.09
SNRPA1-209ENST00000560307 ANKLE1Q8NAG6 615 aa8.23□□□□□ -1.09
SNRPA1-209ENST00000560307 TATDN2Q93075 761 aa8.23□□□□□ -1.09
SNRPA1-209ENST00000560307 CDK11AQ9UQ88 783 aaPredicted RBP8.23□□□□□ -1.09
SNRPA1-209ENST00000560307 SETD5Q9C0A6 1442 aa8.22□□□□□ -1.09
SNRPA1-209ENST00000560307 LCE2CQ5TA81 110 aa8.22□□□□□ -1.09
SNRPA1-209ENST00000560307 CRIPAKQ8N1N5 446 aa8.22□□□□□ -1.09
SNRPA1-209ENST00000560307 C1orf115Q9H7X2 142 aa8.22□□□□□ -1.09
SNRPA1-209ENST00000560307 TERTO14746 1132 aaKnown RBP8.21□□□□□ -1.1
SNRPA1-209ENST00000560307 PTGDRQ13258 359 aa8.21□□□□□ -1.1
SNRPA1-209ENST00000560307 RAB3GAP2Q9H2M9 1393 aa8.21□□□□□ -1.1
SNRPA1-209ENST00000560307 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.21□□□□□ -1.1
SNRPA1-209ENST00000560307 ANP32CO43423 234 aa8.2□□□□□ -1.1
SNRPA1-209ENST00000560307 TLL1O43897 1013 aa8.2□□□□□ -1.1
SNRPA1-209ENST00000560307 MS4A1P11836 297 aa8.2□□□□□ -1.1
SNRPA1-209ENST00000560307 PRIM1P49642 420 aaKnown RBP8.2□□□□□ -1.1
SNRPA1-209ENST00000560307 PRSS12P56730 875 aa8.2□□□□□ -1.1
SNRPA1-209ENST00000560307 PCDHB3Q9Y5E6 796 aa8.2□□□□□ -1.1
SNRPA1-209ENST00000560307 C3orf80F5H4A9 247 aa8.19□□□□□ -1.1
SNRPA1-209ENST00000560307 S1PR4O95977 384 aa8.19□□□□□ -1.1
SNRPA1-209ENST00000560307 EN1Q05925 392 aaPredicted RBP8.19□□□□□ -1.1
SNRPA1-209ENST00000560307 CLUAP1Q96AJ1 413 aa8.19□□□□□ -1.1
SNRPA1-209ENST00000560307 FAM198AQ9UFP1 575 aa8.19□□□□□ -1.1
SNRPA1-209ENST00000560307 GOPCQ9HD26 462 aa8.18□□□□□ -1.1
SNRPA1-209ENST00000560307 MDM2Q00987 491 aaPredicted RBP8.17□□□□□ -1.1
SNRPA1-209ENST00000560307 BLOC1S3Q6QNY0 202 aa8.17□□□□□ -1.1
SNRPA1-209ENST00000560307 SLF2Q8IX21 1173 aa8.17□□□□□ -1.1
SNRPA1-209ENST00000560307 REPIN1Q9BWE0 567 aaKnown RBP8.17□□□□□ -1.1
SNRPA1-209ENST00000560307 CDHR5Q9HBB8 845 aa8.17□□□□□ -1.1
SNRPA1-209ENST00000560307 ARHGAP35Q9NRY4 1499 aa8.17□□□□□ -1.1
SNRPA1-209ENST00000560307 FHAD1B1AJZ9 1412 aa8.16□□□□□ -1.1
SNRPA1-209ENST00000560307 CLCN1P35523 988 aa8.16□□□□□ -1.1
SNRPA1-209ENST00000560307 DEKP35659 375 aaKnown RBP8.16□□□□□ -1.1
SNRPA1-209ENST00000560307 SLC4A3P48751 1232 aa8.16□□□□□ -1.1
SNRPA1-209ENST00000560307 CTC1Q2NKJ3 1217 aa8.16□□□□□ -1.1
SNRPA1-209ENST00000560307 NUDT18Q6ZVK8 323 aa8.16□□□□□ -1.1
SNRPA1-209ENST00000560307 ZSCAN1Q8NBB4 408 aa8.16□□□□□ -1.1
SNRPA1-209ENST00000560307 PPP4R2Q9NY27 417 aa8.16□□□□□ -1.1
SNRPA1-209ENST00000560307 SWT1Q5T5J6 900 aaKnown RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms