RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 CCNB3Q8WWL7 1395 aa9.41□□□□□ -0.9
USP3-215ENST00000559771 SPOCK2Q92563 424 aa9.41□□□□□ -0.9
USP3-215ENST00000559771 CFDP1Q9UEE9 299 aaPredicted RBP9.41□□□□□ -0.9
USP3-215ENST00000559771 ADGBQ8N7X0 1667 aa9.41□□□□□ -0.9
USP3-215ENST00000559771 EHBP1L1Q8N3D4 1523 aa9.41□□□□□ -0.9
USP3-215ENST00000559771 MTUS2Q5JR59 1369 aa9.4□□□□□ -0.9
USP3-215ENST00000559771 ZNF787Q6DD87 383 aa9.4□□□□□ -0.9
USP3-215ENST00000559771 RNF25Q96BH1 459 aaPredicted RBP9.4□□□□□ -0.9
USP3-215ENST00000559771 CAMSAP1Q5T5Y3 1602 aa9.4□□□□□ -0.9
USP3-215ENST00000559771 PTPRKQ15262 1439 aa9.39□□□□□ -0.91
USP3-215ENST00000559771 CEP162Q5TB80 1403 aa9.39□□□□□ -0.91
USP3-215ENST00000559771 ZNF142P52746 1687 aaPredicted RBP9.39□□□□□ -0.91
USP3-215ENST00000559771 MYO3AQ8NEV4 1616 aa9.39□□□□□ -0.91
USP3-215ENST00000559771 NLRP6P59044 892 aa9.39□□□□□ -0.91
USP3-215ENST00000559771 IFNLR1Q8IU57 520 aaPredicted RBP9.39□□□□□ -0.91
USP3-215ENST00000559771 LOC100996750A0A140TA64 210 aa9.37□□□□□ -0.91
USP3-215ENST00000559771 KRTAP4-6Q9BYQ5 205 aa9.37□□□□□ -0.91
USP3-215ENST00000559771 ESF1Q9H501 851 aaKnown RBP9.37□□□□□ -0.91
USP3-215ENST00000559771 RTEL1-TNFRSF6BF6WH68 1400 aa9.37□□□□□ -0.91
USP3-215ENST00000559771 CEP170BQ9Y4F5 1589 aaPredicted RBP9.37□□□□□ -0.91
USP3-215ENST00000559771 NCOA2Q15596 1464 aa9.36□□□□□ -0.91
USP3-215ENST00000559771 CAMSAP2Q08AD1 1489 aa9.35□□□□□ -0.91
USP3-215ENST00000559771 TCOF1Q13428 1488 aaKnown RBP9.35□□□□□ -0.91
USP3-215ENST00000559771 GGT6Q6P531 493 aa9.35□□□□□ -0.91
USP3-215ENST00000559771 MFRPQ9BY79 579 aa9.35□□□□□ -0.91
USP3-215ENST00000559771 DHX29Q7Z478 1369 aaKnown RBP9.35□□□□□ -0.91
USP3-215ENST00000559771 PLA2R1Q13018 1463 aa9.34□□□□□ -0.91
USP3-215ENST00000559771 NCKAP5LQ9HCH0 1330 aa9.34□□□□□ -0.91
USP3-215ENST00000559771 DNMT1P26358 1616 aaKnown RBP9.34□□□□□ -0.91
USP3-215ENST00000559771 IQSEC2Q5JU85 1478 aa9.34□□□□□ -0.91
USP3-215ENST00000559771 CCDC141Q6ZP82 1450 aa9.34□□□□□ -0.91
USP3-215ENST00000559771 ZBED2Q9BTP6 218 aa9.33□□□□□ -0.92
USP3-215ENST00000559771 ARHGEF5Q12774 1597 aa9.33□□□□□ -0.92
USP3-215ENST00000559771 NRG2O14511 850 aaPredicted RBP9.32□□□□□ -0.92
USP3-215ENST00000559771 A2ML1A8K2U0 1454 aa9.32□□□□□ -0.92
USP3-215ENST00000559771 NEURL4Q96JN8 1562 aa9.32□□□□□ -0.92
USP3-215ENST00000559771 ZNF335Q9H4Z2 1342 aaPredicted RBP9.31□□□□□ -0.92
USP3-215ENST00000559771 RIOK3O14730 519 aaKnown RBP9.31□□□□□ -0.92
USP3-215ENST00000559771 FBXO31Q5XUX0 539 aaPredicted RBP9.31□□□□□ -0.92
USP3-215ENST00000559771 MRPL50Q8N5N7 158 aaKnown RBP9.31□□□□□ -0.92
USP3-215ENST00000559771 TMC2Q8TDI7 906 aa9.31□□□□□ -0.92
USP3-215ENST00000559771 LRRC9Q6ZRR7 1453 aa9.31□□□□□ -0.92
USP3-215ENST00000559771 KDM5DQ9BY66 1539 aa9.31□□□□□ -0.92
USP3-215ENST00000559771 PZPP20742 1482 aa9.3□□□□□ -0.92
USP3-215ENST00000559771 LOC105371045A0A1W2PR82 267 aa9.3□□□□□ -0.92
USP3-215ENST00000559771 GOLGA8CPA6NN73 597 aa9.3□□□□□ -0.92
USP3-215ENST00000559771 FAM135AQ9P2D6 1515 aa9.3□□□□□ -0.92
USP3-215ENST00000559771 VPS8Q8N3P4 1428 aa9.3□□□□□ -0.92
USP3-215ENST00000559771 MAST1Q9Y2H9 1570 aa9.29□□□□□ -0.92
USP3-215ENST00000559771 POLR1AO95602 1720 aaPredicted RBP9.29□□□□□ -0.92
USP3-215ENST00000559771 KIF3BO15066 747 aa9.29□□□□□ -0.92
USP3-215ENST00000559771 PKD2Q13563 968 aa9.29□□□□□ -0.92
USP3-215ENST00000559771 KANK4Q5T7N3 995 aaPredicted RBP9.29□□□□□ -0.92
USP3-215ENST00000559771 ILDR2Q71H61 639 aa9.29□□□□□ -0.92
USP3-215ENST00000559771 BCL2L12Q9HB09 334 aa9.29□□□□□ -0.92
USP3-215ENST00000559771 MROH1Q8NDA8 1641 aa9.29□□□□□ -0.92
USP3-215ENST00000559771 RNF17Q9BXT8 1623 aaKnown RBP9.29□□□□□ -0.92
USP3-215ENST00000559771 TNRQ92752 1358 aa9.27□□□□□ -0.93
USP3-215ENST00000559771 MAP3K1Q13233 1512 aa9.27□□□□□ -0.93
USP3-215ENST00000559771 LCE2AQ5TA79 106 aaPredicted RBP9.27□□□□□ -0.93
USP3-215ENST00000559771 RSPH4AQ5TD94 716 aa9.27□□□□□ -0.93
USP3-215ENST00000559771 ABCC3O15438 1527 aa9.26□□□□□ -0.93
USP3-215ENST00000559771 MIA2Q96PC5 1412 aa9.26□□□□□ -0.93
USP3-215ENST00000559771 VGFO15240 615 aaPredicted RBP9.26□□□□□ -0.93
USP3-215ENST00000559771 EIF2AK4Q9P2K8 1649 aaKnown RBP9.26□□□□□ -0.93
USP3-215ENST00000559771 DISP3Q9P2K9 1392 aa9.25□□□□□ -0.93
USP3-215ENST00000559771 SPATA31D1Q6ZQQ2 1576 aa9.25□□□□□ -0.93
USP3-215ENST00000559771 VWDEQ8N2E2 1590 aa9.25□□□□□ -0.93
USP3-215ENST00000559771 ZC3H13Q5T200 1668 aaKnown RBP9.25□□□□□ -0.93
USP3-215ENST00000559771 WASHC2CQ9Y4E1 1318 aa9.25□□□□□ -0.93
USP3-215ENST00000559771 ALKQ9UM73 1620 aa9.24□□□□□ -0.93
USP3-215ENST00000559771 MYOM3Q5VTT5 1437 aa9.24□□□□□ -0.93
USP3-215ENST00000559771 MED14O60244 1454 aa9.24□□□□□ -0.93
USP3-215ENST00000559771 KCNC4Q03721 635 aa9.24□□□□□ -0.93
USP3-215ENST00000559771 CEP152O94986 1710 aa9.24□□□□□ -0.93
USP3-215ENST00000559771 STRCP1A6NGW2 1772 aa9.24□□□□□ -0.93
USP3-215ENST00000559771 UGGT1Q9NYU2 1555 aa9.24□□□□□ -0.93
USP3-215ENST00000559771 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.24□□□□□ -0.93
USP3-215ENST00000559771 DEPDC5O75140 1603 aa9.23□□□□□ -0.93
USP3-215ENST00000559771 CROCC2H7BZ55 1655 aa9.23□□□□□ -0.93
USP3-215ENST00000559771 NLRP1Q9C000 1473 aa9.23□□□□□ -0.93
USP3-215ENST00000559771 TSPY4P0CV99 314 aa9.23□□□□□ -0.93
USP3-215ENST00000559771 TSPY10P0CW01 314 aa9.23□□□□□ -0.93
USP3-215ENST00000559771 ERVK-7P63135 1459 aa9.22□□□□□ -0.93
USP3-215ENST00000559771 SHANK2Q9UPX8 1470 aa9.22□□□□□ -0.93
USP3-215ENST00000559771 UBAP1LF5GYI3 381 aa9.22□□□□□ -0.93
USP3-215ENST00000559771 UBR1Q8IWV7 1749 aa9.22□□□□□ -0.93
USP3-215ENST00000559771 CPS1P31327 1500 aa9.21□□□□□ -0.93
USP3-215ENST00000559771 IQGAP1P46940 1657 aa9.21□□□□□ -0.93
USP3-215ENST00000559771 BCAMP50895 628 aa9.21□□□□□ -0.94
USP3-215ENST00000559771 ABCC5O15440 1437 aa9.21□□□□□ -0.94
USP3-215ENST00000559771 NPHP4O75161 1426 aaPredicted RBP9.21□□□□□ -0.94
USP3-215ENST00000559771 PRDM15P57071 1507 aaPredicted RBP9.21□□□□□ -0.94
USP3-215ENST00000559771 DUOX2Q9NRD8 1548 aa9.21□□□□□ -0.94
USP3-215ENST00000559771 CFAP65Q6ZU64 1925 aaKnown RBP9.2□□□□□ -0.94
USP3-215ENST00000559771 PTPN23Q9H3S7 1636 aa9.2□□□□□ -0.94
USP3-215ENST00000559771 SOCS7O14512 581 aa9.19□□□□□ -0.94
USP3-215ENST00000559771 ANKLE2Q86XL3 938 aa9.19□□□□□ -0.94
USP3-215ENST00000559771 THEMISQ8N1K5 641 aaPredicted RBP9.19□□□□□ -0.94
USP3-215ENST00000559771 ZNF454Q8N9F8 522 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms