RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 PBRM1Q86U86 1689 aa14.2□□□□□ -0.14
LDLR-208ENST00000558518 TRIM27P14373 513 aa14.19□□□□□ -0.14
LDLR-208ENST00000558518 CLCN1P35523 988 aa14.19□□□□□ -0.14
LDLR-208ENST00000558518 ARHGAP5Q13017 1502 aa14.19□□□□□ -0.14
LDLR-208ENST00000558518 WDR7Q9Y4E6 1490 aa14.19□□□□□ -0.14
LDLR-208ENST00000558518 MSNP26038 577 aaKnown RBP14.19□□□□□ -0.14
LDLR-208ENST00000558518 ADGBQ8N7X0 1667 aa14.19□□□□□ -0.14
LDLR-208ENST00000558518 FBLN1P23142 703 aa14.19□□□□□ -0.14
LDLR-208ENST00000558518 SSFA2P28290 1259 aa14.19□□□□□ -0.14
LDLR-208ENST00000558518 TARBP1Q13395 1621 aaKnown RBP14.18□□□□□ -0.14
LDLR-208ENST00000558518 CABP2Q9NPB3 220 aa14.18□□□□□ -0.14
LDLR-208ENST00000558518 CCDC141Q6ZP82 1450 aa14.18□□□□□ -0.14
LDLR-208ENST00000558518 GOLGA6L22H0YM25 854 aa14.17□□□□□ -0.14
LDLR-208ENST00000558518 MCTP1Q6DN14 999 aa14.17□□□□□ -0.14
LDLR-208ENST00000558518 KIAA1211Q6ZU35 1233 aa14.17□□□□□ -0.14
LDLR-208ENST00000558518 SPAG9O60271 1321 aaKnown RBP14.17□□□□□ -0.14
LDLR-208ENST00000558518 ITSN2Q9NZM3 1697 aa14.17□□□□□ -0.14
LDLR-208ENST00000558518 SRPK2P78362 688 aaKnown RBP14.17□□□□□ -0.14
LDLR-208ENST00000558518 GGT6Q6P531 493 aa14.17□□□□□ -0.14
LDLR-208ENST00000558518 THUMPD2Q9BTF0 503 aaKnown RBP14.17□□□□□ -0.14
LDLR-208ENST00000558518 R3HCC1Q9Y3T6 440 aaKnown RBP14.16□□□□□ -0.14
LDLR-208ENST00000558518 CEP170Q5SW79 1584 aa14.16□□□□□ -0.14
LDLR-208ENST00000558518 ASXL1Q8IXJ9 1541 aa14.16□□□□□ -0.14
LDLR-208ENST00000558518 NSD3Q9BZ95 1437 aa14.16□□□□□ -0.14
LDLR-208ENST00000558518 GPRASP1Q5JY77 1395 aa14.16□□□□□ -0.14
LDLR-208ENST00000558518 RSPH4AQ5TD94 716 aa14.16□□□□□ -0.14
LDLR-208ENST00000558518 CD2BP2O95400 341 aaKnown RBP14.16□□□□□ -0.14
LDLR-208ENST00000558518 NASPP49321 788 aaPredicted RBP14.16□□□□□ -0.14
LDLR-208ENST00000558518 CAVIN1Q6NZI2 390 aaKnown RBP14.16□□□□□ -0.14
LDLR-208ENST00000558518 CHAMP1Q96JM3 812 aa14.16□□□□□ -0.14
LDLR-208ENST00000558518 ERCC6Q03468 1493 aa14.16□□□□□ -0.14
LDLR-208ENST00000558518 RIPK4P57078 832 aa14.15□□□□□ -0.14
LDLR-208ENST00000558518 TRPM1Q7Z4N2 1603 aa14.15□□□□□ -0.14
LDLR-208ENST00000558518 FSD2A1L4K1 749 aa14.14□□□□□ -0.15
LDLR-208ENST00000558518 SYCP2Q9BX26 1530 aa14.14□□□□□ -0.15
LDLR-208ENST00000558518 EFCAB2Q5VUJ9 269 aa14.14□□□□□ -0.15
LDLR-208ENST00000558518 RNF214Q8ND24 703 aa14.14□□□□□ -0.15
LDLR-208ENST00000558518 DDX19BQ9UMR2 479 aa14.14□□□□□ -0.15
LDLR-208ENST00000558518 E9PCH4 1651 aa14.13□□□□□ -0.15
LDLR-208ENST00000558518 ATF7IPQ6VMQ6 1270 aa14.13□□□□□ -0.15
LDLR-208ENST00000558518 HMOX1P09601 288 aa14.13□□□□□ -0.15
LDLR-208ENST00000558518 INSRP06213 1382 aa14.12□□□□□ -0.15
LDLR-208ENST00000558518 PLCB2Q00722 1185 aa14.11□□□□□ -0.15
LDLR-208ENST00000558518 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.11□□□□□ -0.15
LDLR-208ENST00000558518 PTMAP06454 111 aaKnown RBP14.11□□□□□ -0.15
LDLR-208ENST00000558518 DNTTIP2Q5QJE6 756 aaKnown RBP14.11□□□□□ -0.15
LDLR-208ENST00000558518 XPCQ01831 940 aaPredicted RBP14.11□□□□□ -0.15
LDLR-208ENST00000558518 MRC2Q9UBG0 1479 aa14.11□□□□□ -0.15
LDLR-208ENST00000558518 RRP9O43818 475 aaKnown RBP14.1□□□□□ -0.15
LDLR-208ENST00000558518 CALD1Q05682 793 aaKnown RBP14.1□□□□□ -0.15
LDLR-208ENST00000558518 GAS2L2Q8NHY3 880 aa14.1□□□□□ -0.15
LDLR-208ENST00000558518 PIK3C2GO75747 1445 aa14.1□□□□□ -0.15
LDLR-208ENST00000558518 SLC24A1O60721 1099 aa14.1□□□□□ -0.15
LDLR-208ENST00000558518 CHD1LQ86WJ1 897 aa14.1□□□□□ -0.15
LDLR-208ENST00000558518 RBM27Q9P2N5 1060 aaKnown RBP14.1□□□□□ -0.15
LDLR-208ENST00000558518 SCAF11Q99590 1463 aaKnown RBP14.1□□□□□ -0.15
LDLR-208ENST00000558518 WDR63Q8IWG1 891 aa14.09□□□□□ -0.15
LDLR-208ENST00000558518 PRPF40AO75400 957 aaKnown RBP14.08□□□□□ -0.15
LDLR-208ENST00000558518 SYNJ2O15056 1496 aa14.08□□□□□ -0.16
LDLR-208ENST00000558518 PRDM15P57071 1507 aaPredicted RBP14.08□□□□□ -0.16
LDLR-208ENST00000558518 MINK1Q8N4C8 1332 aaPredicted RBP14.07□□□□□ -0.16
LDLR-208ENST00000558518 IPO8O15397 1037 aaKnown RBP14.07□□□□□ -0.16
LDLR-208ENST00000558518 TMPOP42166 694 aaKnown RBP14.07□□□□□ -0.16
LDLR-208ENST00000558518 CDC42BPAQ5VT25 1732 aa14.07□□□□□ -0.16
LDLR-208ENST00000558518 ADCY10Q96PN6 1610 aa14.07□□□□□ -0.16
LDLR-208ENST00000558518 PRDM10Q9NQV6 1147 aa14.07□□□□□ -0.16
LDLR-208ENST00000558518 EIF4G3O43432 1585 aaKnown RBP14.07□□□□□ -0.16
LDLR-208ENST00000558518 ABCC10Q5T3U5 1492 aa14.07□□□□□ -0.16
LDLR-208ENST00000558518 K7ELQ4 463 aaPredicted RBP14.07□□□□□ -0.16
LDLR-208ENST00000558518 PKP1Q13835 747 aa14.07□□□□□ -0.16
LDLR-208ENST00000558518 TBC1D9Q6ZT07 1266 aa14.07□□□□□ -0.16
LDLR-208ENST00000558518 SOX12O15370 315 aa14.06□□□□□ -0.16
LDLR-208ENST00000558518 IFT140Q96RY7 1462 aa14.06□□□□□ -0.16
LDLR-208ENST00000558518 NLRP1Q9C000 1473 aa14.06□□□□□ -0.16
LDLR-208ENST00000558518 ATAD2Q6PL18 1390 aa14.05□□□□□ -0.16
LDLR-208ENST00000558518 SHANK2Q9UPX8 1470 aa14.05□□□□□ -0.16
LDLR-208ENST00000558518 C16orf71Q8IYS4 520 aaPredicted RBP14.05□□□□□ -0.16
LDLR-208ENST00000558518 CROCC2H7BZ55 1655 aa14.05□□□□□ -0.16
LDLR-208ENST00000558518 BCL11BQ9C0K0 894 aaPredicted RBP14.04□□□□□ -0.16
LDLR-208ENST00000558518 KANK1Q14678 1352 aa14.04□□□□□ -0.16
LDLR-208ENST00000558518 NINLQ9Y2I6 1382 aa14.04□□□□□ -0.16
LDLR-208ENST00000558518 NGEFQ8N5V2 710 aa14.03□□□□□ -0.16
LDLR-208ENST00000558518 SMARCA5O60264 1052 aaPredicted RBP14.03□□□□□ -0.16
LDLR-208ENST00000558518 DTNBO60941 627 aa14.03□□□□□ -0.16
LDLR-208ENST00000558518 SKOR2Q2VWA4 1001 aaPredicted RBP14.03□□□□□ -0.16
LDLR-208ENST00000558518 BAG4O95429 457 aaKnown RBP14.03□□□□□ -0.16
LDLR-208ENST00000558518 RAB3GAP1Q15042 981 aa14.02□□□□□ -0.17
LDLR-208ENST00000558518 PRKAR2BP31323 418 aa14.02□□□□□ -0.17
LDLR-208ENST00000558518 ZSCAN30Q86W11 494 aa14.02□□□□□ -0.17
LDLR-208ENST00000558518 ZNF692Q9BU19 519 aaPredicted RBP14.02□□□□□ -0.17
LDLR-208ENST00000558518 CFAP65Q6ZU64 1925 aaKnown RBP14.01□□□□□ -0.17
LDLR-208ENST00000558518 SAMD9LQ8IVG5 1584 aa14.01□□□□□ -0.17
LDLR-208ENST00000558518 SYCE3A1L190 88 aa14.01□□□□□ -0.17
LDLR-208ENST00000558518 DCTN1Q14203 1278 aa14.01□□□□□ -0.17
LDLR-208ENST00000558518 ZGPATQ8N5A5 531 aaKnown RBP14.01□□□□□ -0.17
LDLR-208ENST00000558518 TSPYL6Q8N831 410 aa14.01□□□□□ -0.17
LDLR-208ENST00000558518 NUCB1Q02818 461 aa14.01□□□□□ -0.17
LDLR-208ENST00000558518 CCDC173Q0VFZ6 552 aa14.01□□□□□ -0.17
LDLR-208ENST00000558518 ZBTB40Q9NUA8 1239 aa14.01□□□□□ -0.17
LDLR-208ENST00000558518 TRAPPC8Q9Y2L5 1435 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms