RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 HRCP23327 699 aa19.07■□□□□ 0.64
SHMT2-230ENST00000557427 IQGAP3Q86VI3 1631 aa19.07■□□□□ 0.64
SHMT2-230ENST00000557427 ROBO2Q9HCK4 1378 aa19.06■□□□□ 0.64
SHMT2-230ENST00000557427 UNC5CLQ8IV45 518 aa19.04■□□□□ 0.64
SHMT2-230ENST00000557427 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.04■□□□□ 0.64
SHMT2-230ENST00000557427 PXDNQ92626 1479 aa19.03■□□□□ 0.64
SHMT2-230ENST00000557427 FAM50AQ14320 339 aaKnown RBP19.03■□□□□ 0.64
SHMT2-230ENST00000557427 ZNF326Q5BKZ1 582 aaKnown RBP19.03■□□□□ 0.64
SHMT2-230ENST00000557427 SLIT2O94813 1529 aa19.03■□□□□ 0.64
SHMT2-230ENST00000557427 XPCQ01831 940 aaPredicted RBP19.02■□□□□ 0.64
SHMT2-230ENST00000557427 SF3B2Q13435 895 aaKnown RBP19.01■□□□□ 0.63
SHMT2-230ENST00000557427 SEPT12Q8IYM1 358 aa19.01■□□□□ 0.63
SHMT2-230ENST00000557427 NEXMIFQ5QGS0 1516 aa19■□□□□ 0.63
SHMT2-230ENST00000557427 SPHKAPQ2M3C7 1700 aa19■□□□□ 0.63
SHMT2-230ENST00000557427 FOXO3O43524 673 aa18.99■□□□□ 0.63
SHMT2-230ENST00000557427 NPHP3Q7Z494 1330 aa18.99■□□□□ 0.63
SHMT2-230ENST00000557427 NUP155O75694 1391 aa18.98■□□□□ 0.63
SHMT2-230ENST00000557427 ESCO1Q5FWF5 840 aa18.98■□□□□ 0.63
SHMT2-230ENST00000557427 ONECUT3O60422 494 aaPredicted RBP18.97■□□□□ 0.63
SHMT2-230ENST00000557427 PRAG1Q86YV5 1406 aa18.95■□□□□ 0.62
SHMT2-230ENST00000557427 KRT27Q7Z3Y8 459 aa18.94■□□□□ 0.62
SHMT2-230ENST00000557427 VPS72Q15906 364 aa18.92■□□□□ 0.62
SHMT2-230ENST00000557427 BAG6P46379 1132 aa18.91■□□□□ 0.62
SHMT2-230ENST00000557427 R3HDM1Q15032 1099 aaKnown RBP18.91■□□□□ 0.62
SHMT2-230ENST00000557427 HFM1A2PYH4 1435 aa18.91■□□□□ 0.62
SHMT2-230ENST00000557427 CLTCL1P53675 1640 aa18.9■□□□□ 0.62
SHMT2-230ENST00000557427 EN1Q05925 392 aaPredicted RBP18.9■□□□□ 0.62
SHMT2-230ENST00000557427 SPATA31A3Q5VYP0 1347 aa18.9■□□□□ 0.62
SHMT2-230ENST00000557427 ROCK1Q13464 1354 aa18.9■□□□□ 0.62
SHMT2-230ENST00000557427 CDC42BPGQ6DT37 1551 aa18.89■□□□□ 0.62
SHMT2-230ENST00000557427 USP32Q8NFA0 1604 aa18.89■□□□□ 0.62
SHMT2-230ENST00000557427 TRIM26Q12899 539 aaPredicted RBP18.89■□□□□ 0.61
SHMT2-230ENST00000557427 NUTM2FA1L443 756 aa18.88■□□□□ 0.61
SHMT2-230ENST00000557427 YY1P25490 414 aa18.88■□□□□ 0.61
SHMT2-230ENST00000557427 ITGAEP38570 1179 aa18.88■□□□□ 0.61
SHMT2-230ENST00000557427 PCGF6Q9BYE7 350 aa18.87■□□□□ 0.61
SHMT2-230ENST00000557427 LRPPRCP42704 1394 aaKnown RBP18.86■□□□□ 0.61
SHMT2-230ENST00000557427 CABLES1Q8TDN4 633 aa18.86■□□□□ 0.61
SHMT2-230ENST00000557427 CCDC9Q9Y3X0 531 aaKnown RBP18.85■□□□□ 0.61
SHMT2-230ENST00000557427 PLCH1Q4KWH8 1693 aa18.84■□□□□ 0.61
SHMT2-230ENST00000557427 NAIPQ13075 1403 aa18.83■□□□□ 0.61
SHMT2-230ENST00000557427 VGFO15240 615 aaPredicted RBP18.83■□□□□ 0.6
SHMT2-230ENST00000557427 FAM182BQ5T319 152 aa18.83■□□□□ 0.6
SHMT2-230ENST00000557427 KRT28Q7Z3Y7 464 aa18.82■□□□□ 0.6
SHMT2-230ENST00000557427 NWD2Q9ULI1 1742 aa18.82■□□□□ 0.6
SHMT2-230ENST00000557427 FAM83GA6ND36 823 aa18.81■□□□□ 0.6
SHMT2-230ENST00000557427 WAPLQ7Z5K2 1190 aa18.81■□□□□ 0.6
SHMT2-230ENST00000557427 PLEKHG5O94827 1062 aa18.8■□□□□ 0.6
SHMT2-230ENST00000557427 EZH2Q15910 746 aaKnown RBP18.8■□□□□ 0.6
SHMT2-230ENST00000557427 FAM98CQ17RN3 349 aaKnown RBP18.8■□□□□ 0.6
SHMT2-230ENST00000557427 KIF1BO60333 1816 aa18.79■□□□□ 0.6
SHMT2-230ENST00000557427 DISP2A7MBM2 1401 aa18.79■□□□□ 0.6
SHMT2-230ENST00000557427 RGPD1P0DJD0 1748 aa18.78■□□□□ 0.6
SHMT2-230ENST00000557427 CCDC144AA2RUR9 1427 aa18.78■□□□□ 0.6
SHMT2-230ENST00000557427 A0A0G2JS52 829 aa18.78■□□□□ 0.6
SHMT2-230ENST00000557427 MYT1Q01538 1121 aa18.78■□□□□ 0.6
SHMT2-230ENST00000557427 HAP1P54257 671 aaPredicted RBP18.77■□□□□ 0.6
SHMT2-230ENST00000557427 PLEKHH1Q9ULM0 1364 aa18.77■□□□□ 0.6
SHMT2-230ENST00000557427 TNS1Q9HBL0 1735 aaKnown RBP18.77■□□□□ 0.59
SHMT2-230ENST00000557427 TNS3Q68CZ2 1445 aa18.76■□□□□ 0.59
SHMT2-230ENST00000557427 CAMKK2Q96RR4 588 aa18.76■□□□□ 0.59
SHMT2-230ENST00000557427 ABCA3Q99758 1704 aa18.75■□□□□ 0.59
SHMT2-230ENST00000557427 NRAPQ86VF7 1730 aa18.74■□□□□ 0.59
SHMT2-230ENST00000557427 KIF1AQ12756 1690 aa18.74■□□□□ 0.59
SHMT2-230ENST00000557427 STK26Q9P289 416 aa18.74■□□□□ 0.59
SHMT2-230ENST00000557427 FMN2Q9NZ56 1722 aa18.74■□□□□ 0.59
SHMT2-230ENST00000557427 RPGRIP1LQ68CZ1 1315 aa18.74■□□□□ 0.59
SHMT2-230ENST00000557427 TECPR2O15040 1411 aa18.73■□□□□ 0.59
SHMT2-230ENST00000557427 PPLO60437 1756 aa18.72■□□□□ 0.59
SHMT2-230ENST00000557427 BTG4Q9NY30 223 aa18.71■□□□□ 0.59
SHMT2-230ENST00000557427 RGPD8O14715 1765 aaPredicted RBP18.7■□□□□ 0.58
SHMT2-230ENST00000557427 ADGRF5Q8IZF2 1346 aa18.7■□□□□ 0.58
SHMT2-230ENST00000557427 SBNO1A3KN83 1393 aa18.69■□□□□ 0.58
SHMT2-230ENST00000557427 PSME1Q06323 249 aa18.69■□□□□ 0.58
SHMT2-230ENST00000557427 PHF8Q9UPP1 1060 aa18.69■□□□□ 0.58
SHMT2-230ENST00000557427 SPATA31A5Q5VU36 1347 aa18.69■□□□□ 0.58
SHMT2-230ENST00000557427 SPATA31A7Q8IWB4 1347 aa18.69■□□□□ 0.58
SHMT2-230ENST00000557427 TRIM37O94972 964 aa18.68■□□□□ 0.58
SHMT2-230ENST00000557427 LMOD2Q6P5Q4 547 aa18.68■□□□□ 0.58
SHMT2-230ENST00000557427 THSD7AQ9UPZ6 1657 aa18.68■□□□□ 0.58
SHMT2-230ENST00000557427 ABCC11Q96J66 1382 aa18.68■□□□□ 0.58
SHMT2-230ENST00000557427 TMEM132EQ6IEE7 984 aa18.67■□□□□ 0.58
SHMT2-230ENST00000557427 ARHGEF10O15013 1369 aa18.66■□□□□ 0.58
SHMT2-230ENST00000557427 NRXN1Q9ULB1 1477 aa18.65■□□□□ 0.58
SHMT2-230ENST00000557427 APBA3O96018 575 aa18.64■□□□□ 0.57
SHMT2-230ENST00000557427 RREB1Q92766 1687 aa18.63■□□□□ 0.57
SHMT2-230ENST00000557427 KNDC1Q76NI1 1749 aa18.63■□□□□ 0.57
SHMT2-230ENST00000557427 ADGRB2O60241 1585 aa18.62■□□□□ 0.57
SHMT2-230ENST00000557427 CAMTA1Q9Y6Y1 1673 aa18.62■□□□□ 0.57
SHMT2-230ENST00000557427 NUP188Q5SRE5 1749 aa18.62■□□□□ 0.57
SHMT2-230ENST00000557427 COL14A1Q05707 1796 aaKnown RBP18.62■□□□□ 0.57
SHMT2-230ENST00000557427 IFT172Q9UG01 1749 aa18.61■□□□□ 0.57
SHMT2-230ENST00000557427 PARD3Q8TEW0 1356 aa18.61■□□□□ 0.57
SHMT2-230ENST00000557427 FAM196AQ6ZSG2 479 aa18.61■□□□□ 0.57
SHMT2-230ENST00000557427 RRBP1Q9P2E9 1410 aaKnown RBP18.6■□□□□ 0.57
SHMT2-230ENST00000557427 SPON1Q9HCB6 807 aa18.6■□□□□ 0.57
SHMT2-230ENST00000557427 NINLQ9Y2I6 1382 aa18.59■□□□□ 0.57
SHMT2-230ENST00000557427 KCNQ2O43526 872 aa18.59■□□□□ 0.57
SHMT2-230ENST00000557427 IFFO2Q5TF58 517 aa18.59■□□□□ 0.57
SHMT2-230ENST00000557427 ZNF784Q8NCA9 323 aaPredicted RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms