RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SLC12A5Q9H2X9 1139 aa35.37■■■■□ 3.25
CCDC88C-205ENST00000553403 POGKQ9P215 609 aa35.37■■■■□ 3.25
CCDC88C-205ENST00000553403 USP32Q8NFA0 1604 aa35.36■■■■□ 3.25
CCDC88C-205ENST00000553403 SENP3Q9H4L4 574 aaPredicted RBP35.36■■■■□ 3.25
CCDC88C-205ENST00000553403 TMEM2Q9UHN6 1383 aa35.36■■■■□ 3.25
CCDC88C-205ENST00000553403 FKBP8Q14318 412 aa35.34■■■■□ 3.25
CCDC88C-205ENST00000553403 ABCC11Q96J66 1382 aa35.34■■■■□ 3.25
CCDC88C-205ENST00000553403 NSD3Q9BZ95 1437 aa35.34■■■■□ 3.25
CCDC88C-205ENST00000553403 SMG6Q86US8 1419 aaKnown RBP35.33■■■■□ 3.25
CCDC88C-205ENST00000553403 C3P01024 1663 aa35.33■■■■□ 3.25
CCDC88C-205ENST00000553403 BLMP54132 1417 aaPredicted RBP35.32■■■■□ 3.24
CCDC88C-205ENST00000553403 ANKRD36BQ8N2N9 1353 aa35.32■■■■□ 3.24
CCDC88C-205ENST00000553403 SAFB2Q14151 953 aaKnown RBP eCLIP35.31■■■■□ 3.24
CCDC88C-205ENST00000553403 ATAD2Q6PL18 1390 aa35.31■■■■□ 3.24
CCDC88C-205ENST00000553403 SETD1BQ9UPS6 1966 aaKnown RBP35.29■■■■□ 3.24
CCDC88C-205ENST00000553403 CABP2Q9NPB3 220 aa35.29■■■■□ 3.24
CCDC88C-205ENST00000553403 MINK1Q8N4C8 1332 aaPredicted RBP35.26■■■■□ 3.24
CCDC88C-205ENST00000553403 SRPK2P78362 688 aaKnown RBP35.24■■■■□ 3.23
CCDC88C-205ENST00000553403 SIRT1Q96EB6 747 aa35.24■■■■□ 3.23
CCDC88C-205ENST00000553403 NUDCQ9Y266 331 aa35.24■■■■□ 3.23
CCDC88C-205ENST00000553403 KNDC1Q76NI1 1749 aa35.23■■■■□ 3.23
CCDC88C-205ENST00000553403 CGNL1Q0VF96 1302 aa35.22■■■■□ 3.23
CCDC88C-205ENST00000553403 NSD2O96028 1365 aa35.21■■■■□ 3.23
CCDC88C-205ENST00000553403 METP08581 1390 aa35.21■■■■□ 3.23
CCDC88C-205ENST00000553403 TECPR2O15040 1411 aa35.2■■■■□ 3.23
CCDC88C-205ENST00000553403 PLEKHG1Q9ULL1 1385 aa35.19■■■■□ 3.22
CCDC88C-205ENST00000553403 WDR43Q15061 677 aaKnown RBP eCLIP35.18■■■■□ 3.22
CCDC88C-205ENST00000553403 FAM135BQ49AJ0 1406 aa35.18■■■■□ 3.22
CCDC88C-205ENST00000553403 MORC1Q86VD1 984 aa35.17■■■■□ 3.22
CCDC88C-205ENST00000553403 CDK19Q9BWU1 502 aa35.17■■■■□ 3.22
CCDC88C-205ENST00000553403 SLIT1O75093 1534 aa35.16■■■■□ 3.22
CCDC88C-205ENST00000553403 PDE3BQ13370 1112 aa35.16■■■■□ 3.22
CCDC88C-205ENST00000553403 ADAMTS8Q9UP79 889 aa35.15■■■■□ 3.22
CCDC88C-205ENST00000553403 ARHGAP23Q9P227 1491 aa35.15■■■■□ 3.22
CCDC88C-205ENST00000553403 ADAMTS13Q76LX8 1427 aa35.14■■■■□ 3.22
CCDC88C-205ENST00000553403 CPS1P31327 1500 aa35.14■■■■□ 3.22
CCDC88C-205ENST00000553403 PLEKHH1Q9ULM0 1364 aa35.14■■■■□ 3.22
CCDC88C-205ENST00000553403 A0A1W2PP64 1363 aa35.13■■■■□ 3.21
CCDC88C-205ENST00000553403 POLR3AO14802 1390 aaPredicted RBP35.13■■■■□ 3.21
CCDC88C-205ENST00000553403 WAPLQ7Z5K2 1190 aa35.13■■■■□ 3.21
CCDC88C-205ENST00000553403 TERF2IPQ9NYB0 399 aa35.13■■■■□ 3.21
CCDC88C-205ENST00000553403 ERICH6BQ5W0A0 696 aa35.11■■■■□ 3.21
CCDC88C-205ENST00000553403 BCANQ96GW7 911 aa35.11■■■■□ 3.21
CCDC88C-205ENST00000553403 LTKP29376 864 aa35.1■■■■□ 3.21
CCDC88C-205ENST00000553403 EID1Q9Y6B2 187 aa35.1■■■■□ 3.21
CCDC88C-205ENST00000553403 ILDR1Q86SU0 546 aaPredicted RBP35.09■■■■□ 3.21
CCDC88C-205ENST00000553403 TXNDC2Q86VQ3 553 aa35.09■■■■□ 3.21
CCDC88C-205ENST00000553403 CD163L1Q9NR16 1453 aa35.08■■■■□ 3.21
CCDC88C-205ENST00000553403 MED14O60244 1454 aa35.08■■■■□ 3.21
CCDC88C-205ENST00000553403 DMRT2Q9Y5R5 561 aa35.07■■■■□ 3.2
CCDC88C-205ENST00000553403 THEMISQ8N1K5 641 aaPredicted RBP35.05■■■■□ 3.2
CCDC88C-205ENST00000553403 SENP3-EIF4A1A0A087X0R7 540 aa35.05■■■■□ 3.2
CCDC88C-205ENST00000553403 HDGFL2Q7Z4V5 671 aaPredicted RBP35.05■■■■□ 3.2
CCDC88C-205ENST00000553403 ATP7BP35670 1465 aa35.02■■■■□ 3.2
CCDC88C-205ENST00000553403 WASLO00401 505 aaPredicted RBP35.01■■■■□ 3.2
CCDC88C-205ENST00000553403 PELP1Q8IZL8 1130 aaKnown RBP35■■■■□ 3.19
CCDC88C-205ENST00000553403 RNF123Q5XPI4 1314 aa35■■■■□ 3.19
CCDC88C-205ENST00000553403 CABP1Q9NZU7 370 aa34.98■■■■□ 3.19
CCDC88C-205ENST00000553403 SALL2Q9Y467 1007 aaPredicted RBP34.98■■■■□ 3.19
CCDC88C-205ENST00000553403 ANKRD26Q9UPS8 1709 aa34.97■■■■□ 3.19
CCDC88C-205ENST00000553403 DIP2AQ14689 1571 aa34.96■■■■□ 3.19
CCDC88C-205ENST00000553403 TBX22Q9Y458 520 aa34.95■■■■□ 3.19
CCDC88C-205ENST00000553403 ROBO2Q9HCK4 1378 aa34.95■■■■□ 3.18
CCDC88C-205ENST00000553403 STRCQ7RTU9 1775 aa34.94■■■■□ 3.18
CCDC88C-205ENST00000553403 ADGRB2O60241 1585 aa34.93■■■■□ 3.18
CCDC88C-205ENST00000553403 CEP170BQ9Y4F5 1589 aaPredicted RBP34.93■■■■□ 3.18
CCDC88C-205ENST00000553403 TNNT2P45379 298 aaPredicted RBP34.92■■■■□ 3.18
CCDC88C-205ENST00000553403 CFAP53Q96M91 514 aa34.92■■■■□ 3.18
CCDC88C-205ENST00000553403 SHPRHQ149N8 1683 aa34.92■■■■□ 3.18
CCDC88C-205ENST00000553403 FYB1O15117 783 aa34.9■■■■□ 3.18
CCDC88C-205ENST00000553403 MTHFSP49914 203 aa34.9■■■■□ 3.18
CCDC88C-205ENST00000553403 IRX6P78412 446 aaPredicted RBP34.9■■■■□ 3.18
CCDC88C-205ENST00000553403 NGEFQ8N5V2 710 aa34.9■■■■□ 3.18
CCDC88C-205ENST00000553403 PTPRUQ92729 1446 aa34.89■■■■□ 3.18
CCDC88C-205ENST00000553403 CPSF1Q10570 1443 aaKnown RBP34.88■■■■□ 3.17
CCDC88C-205ENST00000553403 KIF20BQ96Q89 1820 aa34.88■■■■□ 3.17
CCDC88C-205ENST00000553403 PPIP5K1Q6PFW1 1433 aa34.87■■■■□ 3.17
CCDC88C-205ENST00000553403 FBXO41Q8TF61 875 aa34.87■■■■□ 3.17
CCDC88C-205ENST00000553403 SLC26A8Q96RN1 970 aa34.86■■■■□ 3.17
CCDC88C-205ENST00000553403 GGNBP2Q9H3C7 697 aa34.86■■■■□ 3.17
CCDC88C-205ENST00000553403 ZNF521Q96K83 1311 aa34.86■■■■□ 3.17
CCDC88C-205ENST00000553403 NUDT16Q96DE0 195 aaKnown RBP34.86■■■■□ 3.17
CCDC88C-205ENST00000553403 ZNF142P52746 1687 aaPredicted RBP34.85■■■■□ 3.17
CCDC88C-205ENST00000553403 CDCA7LQ96GN5 454 aa34.84■■■■□ 3.17
CCDC88C-205ENST00000553403 CCDC61Q9Y6R9 512 aa34.84■■■■□ 3.17
CCDC88C-205ENST00000553403 CDC42BPGQ6DT37 1551 aa34.83■■■■□ 3.17
CCDC88C-205ENST00000553403 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.83■■■■□ 3.17
CCDC88C-205ENST00000553403 PTCH1Q13635 1447 aa34.83■■■■□ 3.17
CCDC88C-205ENST00000553403 CCDC146Q8IYE0 955 aa34.82■■■■□ 3.16
CCDC88C-205ENST00000553403 EDC4Q6P2E9 1401 aaKnown RBP34.82■■■■□ 3.16
CCDC88C-205ENST00000553403 PPP4R2Q9NY27 417 aa34.81■■■■□ 3.16
CCDC88C-205ENST00000553403 CERKQ8TCT0 537 aa34.79■■■■□ 3.16
CCDC88C-205ENST00000553403 RCAN3Q9UKA8 241 aa34.79■■■■□ 3.16
CCDC88C-205ENST00000553403 AMOTL2Q9Y2J4 779 aa34.79■■■■□ 3.16
CCDC88C-205ENST00000553403 NCKAP5LQ9HCH0 1330 aa34.79■■■■□ 3.16
CCDC88C-205ENST00000553403 APAF1O14727 1248 aa34.78■■■■□ 3.16
CCDC88C-205ENST00000553403 PIK3R4Q99570 1358 aa34.77■■■■□ 3.16
CCDC88C-205ENST00000553403 GOLGA2Q08379 1002 aa34.75■■■■□ 3.15
CCDC88C-205ENST00000553403 MON2Q7Z3U7 1717 aa34.75■■■■□ 3.15
CCDC88C-205ENST00000553403 AKAP12Q02952 1782 aa34.74■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms