RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 BCL9LQ86UU0 1499 aa18.08■□□□□ 0.49
COPA-205ENST00000541366 COL22A1Q8NFW1 1626 aaPredicted RBP18.08■□□□□ 0.48
COPA-205ENST00000541366 MYOM2P54296 1465 aa18.07■□□□□ 0.48
COPA-205ENST00000541366 PPARGC1BQ86YN6 1023 aaKnown RBP18.07■□□□□ 0.48
COPA-205ENST00000541366 KIF1BO60333 1816 aa18.05■□□□□ 0.48
COPA-205ENST00000541366 ESCO1Q5FWF5 840 aa18.05■□□□□ 0.48
COPA-205ENST00000541366 GJD4Q96KN9 370 aaPredicted RBP18.04■□□□□ 0.48
COPA-205ENST00000541366 PXDNQ92626 1479 aa18.03■□□□□ 0.48
COPA-205ENST00000541366 NUTM2FA1L443 756 aa18.03■□□□□ 0.48
COPA-205ENST00000541366 FOXO3O43524 673 aa18.03■□□□□ 0.48
COPA-205ENST00000541366 VGFO15240 615 aaPredicted RBP18.02■□□□□ 0.48
COPA-205ENST00000541366 CCDC125Q86Z20 511 aa18.02■□□□□ 0.48
COPA-205ENST00000541366 NPHP3Q7Z494 1330 aa18.01■□□□□ 0.47
COPA-205ENST00000541366 MARF1Q9Y4F3 1742 aaKnown RBP18.01■□□□□ 0.47
COPA-205ENST00000541366 DEFB132Q7Z7B7 95 aa18.01■□□□□ 0.47
COPA-205ENST00000541366 HFM1A2PYH4 1435 aa18■□□□□ 0.47
COPA-205ENST00000541366 PRAG1Q86YV5 1406 aa17.99■□□□□ 0.47
COPA-205ENST00000541366 GLI3P10071 1580 aa17.99■□□□□ 0.47
COPA-205ENST00000541366 RALGAPBQ86X10 1494 aa17.98■□□□□ 0.47
COPA-205ENST00000541366 WAPLQ7Z5K2 1190 aa17.97■□□□□ 0.47
COPA-205ENST00000541366 UNC5CLQ8IV45 518 aa17.97■□□□□ 0.47
COPA-205ENST00000541366 BRWD3Q6RI45 1802 aa17.97■□□□□ 0.47
COPA-205ENST00000541366 BLMP54132 1417 aaPredicted RBP17.97■□□□□ 0.47
COPA-205ENST00000541366 CDC42BPGQ6DT37 1551 aa17.96■□□□□ 0.47
COPA-205ENST00000541366 STK26Q9P289 416 aa17.96■□□□□ 0.47
COPA-205ENST00000541366 NAIPQ13075 1403 aa17.96■□□□□ 0.47
COPA-205ENST00000541366 SLIT2O94813 1529 aa17.95■□□□□ 0.46
COPA-205ENST00000541366 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.95■□□□□ 0.46
COPA-205ENST00000541366 PPLO60437 1756 aa17.94■□□□□ 0.46
COPA-205ENST00000541366 PLEKHG5O94827 1062 aa17.94■□□□□ 0.46
COPA-205ENST00000541366 RPGRIP1LQ68CZ1 1315 aa17.94■□□□□ 0.46
COPA-205ENST00000541366 SPATA31A3Q5VYP0 1347 aa17.93■□□□□ 0.46
COPA-205ENST00000541366 PLEKHH1Q9ULM0 1364 aa17.92■□□□□ 0.46
COPA-205ENST00000541366 SEPT12Q8IYM1 358 aa17.92■□□□□ 0.46
COPA-205ENST00000541366 ADGRF5Q8IZF2 1346 aa17.92■□□□□ 0.46
COPA-205ENST00000541366 CABLES1Q8TDN4 633 aa17.91■□□□□ 0.46
COPA-205ENST00000541366 LRPPRCP42704 1394 aaKnown RBP17.9■□□□□ 0.46
COPA-205ENST00000541366 PSDA5PKW4 1024 aaPredicted RBP17.89■□□□□ 0.45
COPA-205ENST00000541366 TMEM132EQ6IEE7 984 aa17.89■□□□□ 0.45
COPA-205ENST00000541366 KRT28Q7Z3Y7 464 aa17.89■□□□□ 0.45
COPA-205ENST00000541366 USP32Q8NFA0 1604 aa17.89■□□□□ 0.45
COPA-205ENST00000541366 SF3B2Q13435 895 aaKnown RBP17.88■□□□□ 0.45
COPA-205ENST00000541366 SLC4A1APQ9BWU0 796 aaKnown RBP17.87■□□□□ 0.45
COPA-205ENST00000541366 CCDC9Q9Y3X0 531 aaKnown RBP17.87■□□□□ 0.45
COPA-205ENST00000541366 VPS72Q15906 364 aa17.86■□□□□ 0.45
COPA-205ENST00000541366 RGL3Q3MIN7 710 aa17.86■□□□□ 0.45
COPA-205ENST00000541366 TECPR2O15040 1411 aa17.86■□□□□ 0.45
COPA-205ENST00000541366 FMN2Q9NZ56 1722 aa17.86■□□□□ 0.45
COPA-205ENST00000541366 LRP5O75197 1615 aa17.85■□□□□ 0.45
COPA-205ENST00000541366 HAP1P54257 671 aaPredicted RBP17.85■□□□□ 0.45
COPA-205ENST00000541366 KRT27Q7Z3Y8 459 aa17.85■□□□□ 0.45
COPA-205ENST00000541366 CCDC144AA2RUR9 1427 aa17.84■□□□□ 0.45
COPA-205ENST00000541366 RRBP1Q9P2E9 1410 aaKnown RBP17.84■□□□□ 0.45
COPA-205ENST00000541366 RGPD8O14715 1765 aaPredicted RBP17.84■□□□□ 0.45
COPA-205ENST00000541366 PLCH1Q4KWH8 1693 aa17.83■□□□□ 0.45
COPA-205ENST00000541366 ABCC11Q96J66 1382 aa17.83■□□□□ 0.45
COPA-205ENST00000541366 ONECUT3O60422 494 aaPredicted RBP17.83■□□□□ 0.44
COPA-205ENST00000541366 TNS3Q68CZ2 1445 aa17.82■□□□□ 0.44
COPA-205ENST00000541366 HRCP23327 699 aa17.82■□□□□ 0.44
COPA-205ENST00000541366 LMOD2Q6P5Q4 547 aa17.82■□□□□ 0.44
COPA-205ENST00000541366 KIF1AQ12756 1690 aa17.82■□□□□ 0.44
COPA-205ENST00000541366 PHF8Q9UPP1 1060 aa17.81■□□□□ 0.44
COPA-205ENST00000541366 A0A0G2JS52 829 aa17.8■□□□□ 0.44
COPA-205ENST00000541366 FAM83GA6ND36 823 aa17.8■□□□□ 0.44
COPA-205ENST00000541366 MYT1Q01538 1121 aa17.8■□□□□ 0.44
COPA-205ENST00000541366 FAM182BQ5T319 152 aa17.8■□□□□ 0.44
COPA-205ENST00000541366 KNDC1Q76NI1 1749 aa17.8■□□□□ 0.44
COPA-205ENST00000541366 FAM98CQ17RN3 349 aaKnown RBP17.79■□□□□ 0.44
COPA-205ENST00000541366 YTHDC2Q9H6S0 1430 aaKnown RBP17.79■□□□□ 0.44
COPA-205ENST00000541366 ABCA3Q99758 1704 aa17.78■□□□□ 0.44
COPA-205ENST00000541366 NWD2Q9ULI1 1742 aa17.78■□□□□ 0.44
COPA-205ENST00000541366 BAG6P46379 1132 aa17.78■□□□□ 0.44
COPA-205ENST00000541366 EN1Q05925 392 aaPredicted RBP17.78■□□□□ 0.44
COPA-205ENST00000541366 SPATA31E1Q6ZUB1 1445 aa17.78■□□□□ 0.44
COPA-205ENST00000541366 IFT172Q9UG01 1749 aa17.78■□□□□ 0.44
COPA-205ENST00000541366 PSME1Q06323 249 aa17.77■□□□□ 0.44
COPA-205ENST00000541366 SAFB2Q14151 953 aaKnown RBP eCLIP17.77■□□□□ 0.44
COPA-205ENST00000541366 PIK3C2GO75747 1445 aa17.76■□□□□ 0.43
COPA-205ENST00000541366 PMFBP1Q8TBY8 1022 aa17.76■□□□□ 0.43
COPA-205ENST00000541366 ANKRD30BQ9BXX2 1392 aa17.76■□□□□ 0.43
COPA-205ENST00000541366 R3HDM1Q15032 1099 aaKnown RBP17.75■□□□□ 0.43
COPA-205ENST00000541366 NRXN1Q9ULB1 1477 aa17.75■□□□□ 0.43
COPA-205ENST00000541366 BTG4Q9NY30 223 aa17.74■□□□□ 0.43
COPA-205ENST00000541366 SBNO1A3KN83 1393 aa17.74■□□□□ 0.43
COPA-205ENST00000541366 NRAPQ86VF7 1730 aa17.73■□□□□ 0.43
COPA-205ENST00000541366 ARHGEF10O15013 1369 aa17.72■□□□□ 0.43
COPA-205ENST00000541366 CFAP70Q5T0N1 1121 aa17.71■□□□□ 0.43
COPA-205ENST00000541366 SIRT1Q96EB6 747 aa17.71■□□□□ 0.43
COPA-205ENST00000541366 PRAM1Q96QH2 718 aa17.71■□□□□ 0.43
COPA-205ENST00000541366 EZH2Q15910 746 aaKnown RBP17.69■□□□□ 0.42
COPA-205ENST00000541366 C14orf93Q9H972 538 aaKnown RBP17.69■□□□□ 0.42
COPA-205ENST00000541366 RGPD1P0DJD0 1748 aa17.68■□□□□ 0.42
COPA-205ENST00000541366 TRPM3Q9HCF6 1732 aaPredicted RBP17.67■□□□□ 0.42
COPA-205ENST00000541366 MPHOSPH9Q99550 1183 aa17.67■□□□□ 0.42
COPA-205ENST00000541366 SPATA31A5Q5VU36 1347 aa17.67■□□□□ 0.42
COPA-205ENST00000541366 SPATA31A7Q8IWB4 1347 aa17.67■□□□□ 0.42
COPA-205ENST00000541366 HIRIP3Q9BW71 556 aaPredicted RBP17.66■□□□□ 0.42
COPA-205ENST00000541366 TNS1Q9HBL0 1735 aaKnown RBP17.66■□□□□ 0.42
COPA-205ENST00000541366 DHX57Q6P158 1386 aaKnown RBP17.66■□□□□ 0.42
COPA-205ENST00000541366 COL14A1Q05707 1796 aaKnown RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms