RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 ADGRL1O94910 1474 aa17.39■□□□□ 0.37
USP3-204ENST00000540797 ZNF608Q9ULD9 1512 aaPredicted RBP17.38■□□□□ 0.37
USP3-204ENST00000540797 NBPF8Q3BBV2 869 aa17.38■□□□□ 0.37
USP3-204ENST00000540797 FBXW7Q969H0 707 aa17.38■□□□□ 0.37
USP3-204ENST00000540797 TCP11L2Q8N4U5 519 aa17.37■□□□□ 0.37
USP3-204ENST00000540797 RUFY2Q8WXA3 655 aa17.37■□□□□ 0.37
USP3-204ENST00000540797 GLIPR1L2Q4G1C9 344 aa17.37■□□□□ 0.37
USP3-204ENST00000540797 TRIM34Q9BYJ4 488 aa17.37■□□□□ 0.37
USP3-204ENST00000540797 BRD4O60885 1362 aaPredicted RBP17.37■□□□□ 0.37
USP3-204ENST00000540797 TOM1L2Q6ZVM7 507 aa17.37■□□□□ 0.37
USP3-204ENST00000540797 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.37■□□□□ 0.37
USP3-204ENST00000540797 SYAP1Q96A49 352 aaPredicted RBP17.37■□□□□ 0.37
USP3-204ENST00000540797 RBM42Q9BTD8 480 aaKnown RBP17.37■□□□□ 0.37
USP3-204ENST00000540797 PIP4K2BP78356 416 aa17.36■□□□□ 0.37
USP3-204ENST00000540797 MARCH6O60337 910 aa17.36■□□□□ 0.37
USP3-204ENST00000540797 RBM33Q96EV2 1170 aaKnown RBP17.36■□□□□ 0.37
USP3-204ENST00000540797 VPS53Q5VIR6 699 aa17.36■□□□□ 0.37
USP3-204ENST00000540797 L1TD1Q5T7N2 865 aaKnown RBP17.36■□□□□ 0.37
USP3-204ENST00000540797 HSP90AB4PQ58FF6 505 aa17.35■□□□□ 0.37
USP3-204ENST00000540797 CSPP1Q1MSJ5 1256 aa17.35■□□□□ 0.37
USP3-204ENST00000540797 APPP05067 770 aa17.34■□□□□ 0.37
USP3-204ENST00000540797 SYNE3Q6ZMZ3 975 aa17.34■□□□□ 0.37
USP3-204ENST00000540797 PRDM11Q9NQV5 511 aa17.34■□□□□ 0.37
USP3-204ENST00000540797 AKAP17AQ02040 695 aaKnown RBP17.34■□□□□ 0.37
USP3-204ENST00000540797 CCDC30Q5VVM6 783 aa17.34■□□□□ 0.37
USP3-204ENST00000540797 KIF14Q15058 1648 aa17.33■□□□□ 0.37
USP3-204ENST00000540797 CAMSAP2Q08AD1 1489 aa17.33■□□□□ 0.37
USP3-204ENST00000540797 SULT6B1Q6IMI4 303 aa17.33■□□□□ 0.37
USP3-204ENST00000540797 CHMP4CQ96CF2 233 aa17.33■□□□□ 0.37
USP3-204ENST00000540797 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.33■□□□□ 0.363e-6■□□□□ 10.3
USP3-204ENST00000540797 PCF11O94913 1555 aaKnown RBP17.33■□□□□ 0.36
USP3-204ENST00000540797 UBTFL1P0CB47 393 aaPredicted RBP17.33■□□□□ 0.36
USP3-204ENST00000540797 ATAD2Q6PL18 1390 aa17.32■□□□□ 0.36
USP3-204ENST00000540797 XPCQ01831 940 aaPredicted RBP17.32■□□□□ 0.36
USP3-204ENST00000540797 RAD21O60216 631 aa17.32■□□□□ 0.36
USP3-204ENST00000540797 FAM161AQ3B820 660 aa17.32■□□□□ 0.36
USP3-204ENST00000540797 GZF1Q9H116 711 aaPredicted RBP17.32■□□□□ 0.36
USP3-204ENST00000540797 DDX54Q8TDD1 881 aaKnown RBP17.32■□□□□ 0.36
USP3-204ENST00000540797 SF3A1Q15459 793 aaKnown RBP17.31■□□□□ 0.36
USP3-204ENST00000540797 FAM184AQ8NB25 1140 aa17.31■□□□□ 0.36
USP3-204ENST00000540797 H3BQV1 296 aa17.31■□□□□ 0.36
USP3-204ENST00000540797 IFFO2Q5TF58 517 aa17.31■□□□□ 0.36
USP3-204ENST00000540797 ZKSCAN1P17029 563 aaPredicted RBP17.31■□□□□ 0.36
USP3-204ENST00000540797 NEUROD6Q96NK8 337 aa17.31■□□□□ 0.36
USP3-204ENST00000540797 REC8O95072 547 aa17.3■□□□□ 0.36
USP3-204ENST00000540797 TPM4P67936 248 aa17.3■□□□□ 0.36
USP3-204ENST00000540797 ZNF530Q6P9A1 599 aaPredicted RBP17.3■□□□□ 0.36
USP3-204ENST00000540797 KIF6Q6ZMV9 814 aa17.3■□□□□ 0.36
USP3-204ENST00000540797 SPG7Q9UQ90 795 aa17.3■□□□□ 0.36
USP3-204ENST00000540797 FAM177BA6PVY3 158 aa17.3■□□□□ 0.36
USP3-204ENST00000540797 CABP4P57796 275 aa17.3■□□□□ 0.36
USP3-204ENST00000540797 NUDT16Q96DE0 195 aaKnown RBP17.3■□□□□ 0.36
USP3-204ENST00000540797 PEG3Q9GZU2 1588 aa17.29■□□□□ 0.36
USP3-204ENST00000540797 CHAF1AQ13111 956 aaPredicted RBP17.29■□□□□ 0.36
USP3-204ENST00000540797 FOXD4L5Q5VV16 416 aaPredicted RBP17.29■□□□□ 0.36
USP3-204ENST00000540797 FOXD4L4Q8WXT5 416 aaPredicted RBP17.29■□□□□ 0.36
USP3-204ENST00000540797 CPLX2Q6PUV4 134 aaKnown RBP17.28■□□□□ 0.36
USP3-204ENST00000540797 MSNP26038 577 aaKnown RBP17.28■□□□□ 0.36
USP3-204ENST00000540797 CCDC61Q9Y6R9 512 aa17.28■□□□□ 0.36
USP3-204ENST00000540797 NAIPQ13075 1403 aa17.28■□□□□ 0.36
USP3-204ENST00000540797 ERC2O15083 957 aa17.28■□□□□ 0.36
USP3-204ENST00000540797 DENND4BO75064 1496 aaPredicted RBP17.28■□□□□ 0.36
USP3-204ENST00000540797 CEBPAP49715 358 aaPredicted RBP17.28■□□□□ 0.36
USP3-204ENST00000540797 SF3B2Q13435 895 aaKnown RBP17.28■□□□□ 0.36
USP3-204ENST00000540797 CTDP1Q9Y5B0 961 aaPredicted RBP17.28■□□□□ 0.36
USP3-204ENST00000540797 NCBP3Q53F19 620 aaKnown RBP17.27■□□□□ 0.36
USP3-204ENST00000540797 PANK1Q8TE04 598 aa17.27■□□□□ 0.36
USP3-204ENST00000540797 IPO9Q96P70 1041 aaKnown RBP17.27■□□□□ 0.36
USP3-204ENST00000540797 KIAA2012Q0VF49 1180 aa17.27■□□□□ 0.36
USP3-204ENST00000540797 FBXO31Q5XUX0 539 aaPredicted RBP17.27■□□□□ 0.36
USP3-204ENST00000540797 TRDNQ13061 729 aa17.27■□□□□ 0.35
USP3-204ENST00000540797 WAPLQ7Z5K2 1190 aa17.26■□□□□ 0.35
USP3-204ENST00000540797 ABCC5O15440 1437 aa17.26■□□□□ 0.35
USP3-204ENST00000540797 TWISTNBQ3B726 338 aaPredicted RBP17.26■□□□□ 0.35
USP3-204ENST00000540797 ANO2Q9NQ90 1003 aa17.26■□□□□ 0.35
USP3-204ENST00000540797 RRS1Q15050 365 aaKnown RBP17.26■□□□□ 0.35
USP3-204ENST00000540797 NAP1L5Q96NT1 182 aaPredicted RBP17.26■□□□□ 0.35
USP3-204ENST00000540797 PDE4AP27815 886 aa17.26■□□□□ 0.35
USP3-204ENST00000540797 EXOSC9Q06265 439 aaKnown RBP17.26■□□□□ 0.35
USP3-204ENST00000540797 ZC3H6P61129 1189 aaKnown RBP17.25■□□□□ 0.35
USP3-204ENST00000540797 GNAI3P08754 354 aa17.25■□□□□ 0.35
USP3-204ENST00000540797 FANCAO15360 1455 aa17.25■□□□□ 0.35
USP3-204ENST00000540797 RNF20Q5VTR2 975 aa17.25■□□□□ 0.35
USP3-204ENST00000540797 PNISRQ8TF01 805 aaKnown RBP17.25■□□□□ 0.35
USP3-204ENST00000540797 AKNAQ7Z591 1439 aa17.25■□□□□ 0.35
USP3-204ENST00000540797 LNPKQ9C0E8 428 aa17.24■□□□□ 0.35
USP3-204ENST00000540797 HDGFL1Q5TGJ6 251 aa17.23■□□□□ 0.35
USP3-204ENST00000540797 DHX16O60231 1041 aaKnown RBP17.23■□□□□ 0.35
USP3-204ENST00000540797 AAMPQ13685 434 aa17.23■□□□□ 0.35
USP3-204ENST00000540797 CREBRFQ8IUR6 639 aa17.23■□□□□ 0.35
USP3-204ENST00000540797 AMER1Q5JTC6 1135 aaPredicted RBP17.22■□□□□ 0.35
USP3-204ENST00000540797 PTPN23Q9H3S7 1636 aa17.22■□□□□ 0.35
USP3-204ENST00000540797 CPLX1O14810 134 aa17.22■□□□□ 0.35
USP3-204ENST00000540797 KCNH5Q8NCM2 988 aa17.22■□□□□ 0.35
USP3-204ENST00000540797 IDI1Q13907 227 aa17.22■□□□□ 0.35
USP3-204ENST00000540797 WASHC4Q2M389 1173 aa17.22■□□□□ 0.35
USP3-204ENST00000540797 MCTP1Q6DN14 999 aa17.21■□□□□ 0.35
USP3-204ENST00000540797 PPP6R1Q9UPN7 881 aa17.21■□□□□ 0.35
USP3-204ENST00000540797 CCDC27Q2M243 656 aa17.21■□□□□ 0.35
USP3-204ENST00000540797 CDCA7LQ96GN5 454 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms