RNA–Protein interactions for RNA: ENST00000524773.5

CAPN1-202, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-202ENST00000524773 TMEM132EQ6IEE7 984 aa16.78■□□□□ 0.28
CAPN1-202ENST00000524773 FOXD4L1Q9NU39 408 aa16.77■□□□□ 0.28
CAPN1-202ENST00000524773 MTHFSP49914 203 aa16.77■□□□□ 0.28
CAPN1-202ENST00000524773 CD109Q6YHK3 1445 aa16.77■□□□□ 0.27
CAPN1-202ENST00000524773 RSPH6AQ9H0K4 717 aa16.77■□□□□ 0.27
CAPN1-202ENST00000524773 MADDQ8WXG6 1647 aa16.76■□□□□ 0.27
CAPN1-202ENST00000524773 NAP1L5Q96NT1 182 aaPredicted RBP16.76■□□□□ 0.27
CAPN1-202ENST00000524773 ZFYVE16Q7Z3T8 1539 aa16.75■□□□□ 0.27
CAPN1-202ENST00000524773 UGGT1Q9NYU2 1555 aa16.75■□□□□ 0.27
CAPN1-202ENST00000524773 KIF3BO15066 747 aa16.75■□□□□ 0.27
CAPN1-202ENST00000524773 SAFB2Q14151 953 aaKnown RBP eCLIP16.75■□□□□ 0.27
CAPN1-202ENST00000524773 PMFBP1Q8TBY8 1022 aa16.75■□□□□ 0.27
CAPN1-202ENST00000524773 GOLGA6L3A6NEY3 463 aa16.74■□□□□ 0.27
CAPN1-202ENST00000524773 MCM4P33991 863 aa16.74■□□□□ 0.27
CAPN1-202ENST00000524773 RNF17Q9BXT8 1623 aaKnown RBP16.74■□□□□ 0.27
CAPN1-202ENST00000524773 SYNMO15061 1565 aa16.74■□□□□ 0.27
CAPN1-202ENST00000524773 U2AF1L5P0DN76 240 aaPredicted RBP16.74■□□□□ 0.27
CAPN1-202ENST00000524773 U2AF1Q01081 240 aaKnown RBP eCLIP16.74■□□□□ 0.27
CAPN1-202ENST00000524773 FTSJ3Q8IY81 847 aaKnown RBP16.74■□□□□ 0.27
CAPN1-202ENST00000524773 MYOM1P52179 1685 aa16.74■□□□□ 0.27
CAPN1-202ENST00000524773 RUNDC1Q96C34 613 aa16.73■□□□□ 0.27
CAPN1-202ENST00000524773 C22orf23Q9BZE7 217 aa16.73■□□□□ 0.27
CAPN1-202ENST00000524773 ATP7AQ04656 1500 aa16.73■□□□□ 0.27
CAPN1-202ENST00000524773 NSD3Q9BZ95 1437 aa16.73■□□□□ 0.27
CAPN1-202ENST00000524773 ERVK-7P63135 1459 aa16.73■□□□□ 0.27
CAPN1-202ENST00000524773 IQGAP1P46940 1657 aa16.72■□□□□ 0.27
CAPN1-202ENST00000524773 RWDD1Q9H446 243 aaPredicted RBP16.72■□□□□ 0.27
CAPN1-202ENST00000524773 TRAK2O60296 914 aa16.71■□□□□ 0.27
CAPN1-202ENST00000524773 ITPRIPQ8IWB1 547 aa16.71■□□□□ 0.27
CAPN1-202ENST00000524773 L1TD1Q5T7N2 865 aaKnown RBP16.71■□□□□ 0.26
CAPN1-202ENST00000524773 INO80Q9ULG1 1556 aaPredicted RBP16.7■□□□□ 0.26
CAPN1-202ENST00000524773 U2SURPO15042 1029 aaKnown RBP16.69■□□□□ 0.26
CAPN1-202ENST00000524773 SMC4Q9NTJ3 1288 aa16.69■□□□□ 0.26
CAPN1-202ENST00000524773 RIMBP3CA6NJZ7 1639 aa16.69■□□□□ 0.26
CAPN1-202ENST00000524773 RIMBP3BA6NNM3 1639 aa16.69■□□□□ 0.26
CAPN1-202ENST00000524773 RIMBP3Q9UFD9 1639 aa16.69■□□□□ 0.26
CAPN1-202ENST00000524773 EXOSC9Q06265 439 aaKnown RBP16.69■□□□□ 0.26
CAPN1-202ENST00000524773 MVPQ14764 893 aaKnown RBP16.69■□□□□ 0.26
CAPN1-202ENST00000524773 ZNF518AQ6AHZ1 1483 aa16.69■□□□□ 0.26
CAPN1-202ENST00000524773 CLTCL1P53675 1640 aa16.68■□□□□ 0.26
CAPN1-202ENST00000524773 DZIP1LQ8IYY4 767 aaKnown RBP16.67■□□□□ 0.26
CAPN1-202ENST00000524773 NPC1L1Q9UHC9 1359 aa16.67■□□□□ 0.26
CAPN1-202ENST00000524773 CFAP74Q9C0B2 1584 aa16.67■□□□□ 0.26
CAPN1-202ENST00000524773 TRIM27P14373 513 aa16.67■□□□□ 0.26
CAPN1-202ENST00000524773 LNPKQ9C0E8 428 aa16.67■□□□□ 0.26
CAPN1-202ENST00000524773 VIRMAQ69YN4 1812 aaKnown RBP16.66■□□□□ 0.26
CAPN1-202ENST00000524773 ZKSCAN2Q63HK3 967 aa16.65■□□□□ 0.26
CAPN1-202ENST00000524773 SSH1Q8WYL5 1049 aa16.65■□□□□ 0.26
CAPN1-202ENST00000524773 PNNQ9H307 717 aaKnown RBP16.65■□□□□ 0.26
CAPN1-202ENST00000524773 POLR3AO14802 1390 aaPredicted RBP16.65■□□□□ 0.26
CAPN1-202ENST00000524773 FSD2A1L4K1 749 aa16.65■□□□□ 0.26
CAPN1-202ENST00000524773 NOB1Q9ULX3 412 aaKnown RBP16.65■□□□□ 0.26
CAPN1-202ENST00000524773 KDM5AP29375 1690 aaKnown RBP16.64■□□□□ 0.26
CAPN1-202ENST00000524773 ERBB4Q15303 1308 aa16.64■□□□□ 0.25
CAPN1-202ENST00000524773 C1orf115Q9H7X2 142 aa16.64■□□□□ 0.25
CAPN1-202ENST00000524773 CHMP5Q9NZZ3 219 aa16.64■□□□□ 0.25
CAPN1-202ENST00000524773 KIDINS220Q9ULH0 1771 aa16.64■□□□□ 0.25
CAPN1-202ENST00000524773 KANK1Q14678 1352 aa16.64■□□□□ 0.25
CAPN1-202ENST00000524773 CEP152O94986 1710 aa16.63■□□□□ 0.25
CAPN1-202ENST00000524773 NGEFQ8N5V2 710 aa16.63■□□□□ 0.25
CAPN1-202ENST00000524773 POGZQ7Z3K3 1410 aa16.63■□□□□ 0.25
CAPN1-202ENST00000524773 TMEM57Q8N5G2 664 aa16.63■□□□□ 0.25
CAPN1-202ENST00000524773 RBM42Q9BTD8 480 aaKnown RBP16.63■□□□□ 0.25
CAPN1-202ENST00000524773 CABP2Q9NPB3 220 aa16.63■□□□□ 0.25
CAPN1-202ENST00000524773 TRPM2O94759 1503 aa16.63■□□□□ 0.25
CAPN1-202ENST00000524773 FBLN1P23142 703 aa16.62■□□□□ 0.25
CAPN1-202ENST00000524773 GAS2L3Q86XJ1 694 aa16.62■□□□□ 0.25
CAPN1-202ENST00000524773 CD2BP2O95400 341 aaKnown RBP16.62■□□□□ 0.25
CAPN1-202ENST00000524773 HSCBQ8IWL3 235 aa16.62■□□□□ 0.25
CAPN1-202ENST00000524773 PTPRTO14522 1441 aa16.62■□□□□ 0.25
CAPN1-202ENST00000524773 WDR63Q8IWG1 891 aa16.62■□□□□ 0.25
CAPN1-202ENST00000524773 GGNBP2Q9H3C7 697 aa16.62■□□□□ 0.25
CAPN1-202ENST00000524773 NEO1Q92859 1461 aa16.62■□□□□ 0.25
CAPN1-202ENST00000524773 DEPDC5O75140 1603 aa16.6■□□□□ 0.25
CAPN1-202ENST00000524773 RAPGEF3O95398 923 aa16.6■□□□□ 0.25
CAPN1-202ENST00000524773 PHF23Q9BUL5 403 aaPredicted RBP16.6■□□□□ 0.25
CAPN1-202ENST00000524773 MYH16Q9H6N6 1097 aa16.6■□□□□ 0.25
CAPN1-202ENST00000524773 SPHKAPQ2M3C7 1700 aa16.6■□□□□ 0.25
CAPN1-202ENST00000524773 NINLQ9Y2I6 1382 aa16.6■□□□□ 0.25
CAPN1-202ENST00000524773 GRPEL1Q9HAV7 217 aa16.6■□□□□ 0.25
CAPN1-202ENST00000524773 ZNF692Q9BU19 519 aaPredicted RBP16.59■□□□□ 0.25
CAPN1-202ENST00000524773 NEURL4Q96JN8 1562 aa16.59■□□□□ 0.25
CAPN1-202ENST00000524773 TNPO1Q92973 898 aaKnown RBP16.59■□□□□ 0.25
CAPN1-202ENST00000524773 NOS1P29475 1434 aa16.59■□□□□ 0.25
CAPN1-202ENST00000524773 CFAP53Q96M91 514 aa16.59■□□□□ 0.25
CAPN1-202ENST00000524773 STK26Q9P289 416 aa16.59■□□□□ 0.25
CAPN1-202ENST00000524773 MLH3Q9UHC1 1453 aa16.59■□□□□ 0.25
CAPN1-202ENST00000524773 ELL2O00472 640 aaPredicted RBP16.58■□□□□ 0.24
CAPN1-202ENST00000524773 FAM69CQ0P6D2 419 aa16.58■□□□□ 0.24
CAPN1-202ENST00000524773 KIAA1210Q9ULL0 1709 aa16.57■□□□□ 0.24
CAPN1-202ENST00000524773 HSP90AB1P08238 724 aaKnown RBP16.57■□□□□ 0.24
CAPN1-202ENST00000524773 SHPRHQ149N8 1683 aa16.57■□□□□ 0.24
CAPN1-202ENST00000524773 CFAP65Q6ZU64 1925 aaKnown RBP16.57■□□□□ 0.24
CAPN1-202ENST00000524773 HSP90AA1P07900 732 aaKnown RBP16.56■□□□□ 0.24
CAPN1-202ENST00000524773 ABCA6Q8N139 1617 aa16.56■□□□□ 0.24
CAPN1-202ENST00000524773 MAP3K4Q9Y6R4 1608 aa16.56■□□□□ 0.24
CAPN1-202ENST00000524773 ATF7IPQ6VMQ6 1270 aa16.56■□□□□ 0.24
CAPN1-202ENST00000524773 THUMPD2Q9BTF0 503 aaKnown RBP16.56■□□□□ 0.24
CAPN1-202ENST00000524773 TRIM35Q9UPQ4 493 aa16.56■□□□□ 0.24
CAPN1-202ENST00000524773 HECW2Q9P2P5 1572 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms