RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	NPHP4	O75161	1426 aa	Predicted RBP	14.45	□□□□□ -0.1
SPIDR-222	ENST00000524006	ZFYVE9	O95405	1425 aa		14.45	□□□□□ -0.1
SPIDR-222	ENST00000524006	PIP4K2B	P78356	416 aa		14.45	□□□□□ -0.1
SPIDR-222	ENST00000524006	TOM1	O60784	492 aa		14.44	□□□□□ -0.1
SPIDR-222	ENST00000524006	BCAN	Q96GW7	911 aa		14.44	□□□□□ -0.1
SPIDR-222	ENST00000524006	C14orf93	Q9H972	538 aa	Known RBP	14.43	□□□□□ -0.1
SPIDR-222	ENST00000524006	SMG6	Q86US8	1419 aa	Known RBP	14.42	□□□□□ -0.1
SPIDR-222	ENST00000524006	ALK	Q9UM73	1620 aa		14.42	□□□□□ -0.1
SPIDR-222	ENST00000524006	TRAK1	Q9UPV9	953 aa		14.42	□□□□□ -0.1
SPIDR-222	ENST00000524006	LRPPRC	P42704	1394 aa	Known RBP	14.42	□□□□□ -0.1
SPIDR-222	ENST00000524006	ANKRD26	Q9UPS8	1709 aa		14.41	□□□□□ -0.1
SPIDR-222	ENST00000524006	PNISR	Q8TF01	805 aa	Known RBP	14.41	□□□□□ -0.1
SPIDR-222	ENST00000524006	KIF20B	Q96Q89	1820 aa		14.41	□□□□□ -0.1
SPIDR-222	ENST00000524006	NPC1L1	Q9UHC9	1359 aa		14.4	□□□□□ -0.1
SPIDR-222	ENST00000524006	WDR43	Q15061	677 aa	Known RBP eCLIP	14.4	□□□□□ -0.1
SPIDR-222	ENST00000524006	INSR	P06213	1382 aa		14.39	□□□□□ -0.11
SPIDR-222	ENST00000524006	PER1	O15534	1290 aa	Predicted RBP	14.39	□□□□□ -0.11
SPIDR-222	ENST00000524006	IDI1	Q13907	227 aa		14.39	□□□□□ -0.11
SPIDR-222	ENST00000524006	EVC2	Q86UK5	1308 aa		14.39	□□□□□ -0.11
SPIDR-222	ENST00000524006	MED1	Q15648	1581 aa	Predicted RBP	14.39	□□□□□ -0.11
SPIDR-222	ENST00000524006	KNDC1	Q76NI1	1749 aa		14.38	□□□□□ -0.11
SPIDR-222	ENST00000524006	NUTM2D	Q5VT03	806 aa	Predicted RBP	14.38	□□□□□ -0.11
SPIDR-222	ENST00000524006	SETD1A	O15047	1707 aa	Known RBP	14.38	□□□□□ -0.11
SPIDR-222	ENST00000524006	LRRC7	Q96NW7	1537 aa		14.37	□□□□□ -0.11
SPIDR-222	ENST00000524006	NUDC	Q9Y266	331 aa		14.37	□□□□□ -0.11
SPIDR-222	ENST00000524006	BLM	P54132	1417 aa	Predicted RBP	14.37	□□□□□ -0.11
SPIDR-222	ENST00000524006	UBR1	Q8IWV7	1749 aa		14.37	□□□□□ -0.11
SPIDR-222	ENST00000524006	TULP4	Q9NRJ4	1543 aa		14.36	□□□□□ -0.11
SPIDR-222	ENST00000524006	LTK	P29376	864 aa		14.36	□□□□□ -0.11
SPIDR-222	ENST00000524006	ERICH6B	Q5W0A0	696 aa		14.36	□□□□□ -0.11
SPIDR-222	ENST00000524006	STRCP1	A6NGW2	1772 aa		14.36	□□□□□ -0.11
SPIDR-222	ENST00000524006	RIMS2	Q9UQ26	1411 aa		14.35	□□□□□ -0.11
SPIDR-222	ENST00000524006	TMEM132E	Q6IEE7	984 aa		14.35	□□□□□ -0.11
SPIDR-222	ENST00000524006	ITSN1	Q15811	1721 aa		14.35	□□□□□ -0.11
SPIDR-222	ENST00000524006	NINL	Q9Y2I6	1382 aa		14.34	□□□□□ -0.11
SPIDR-222	ENST00000524006	NSD3	Q9BZ95	1437 aa		14.34	□□□□□ -0.11
SPIDR-222	ENST00000524006	YTHDC2	Q9H6S0	1430 aa	Known RBP	14.33	□□□□□ -0.11
SPIDR-222	ENST00000524006	ARHGAP23	Q9P227	1491 aa		14.33	□□□□□ -0.12
SPIDR-222	ENST00000524006	DLC1	Q96QB1	1528 aa		14.33	□□□□□ -0.12
SPIDR-222	ENST00000524006	PPP2R1A	P30153	589 aa		14.33	□□□□□ -0.12
SPIDR-222	ENST00000524006	POTED	Q86YR6	584 aa		14.33	□□□□□ -0.12
SPIDR-222	ENST00000524006	POGK	Q9P215	609 aa		14.33	□□□□□ -0.12
SPIDR-222	ENST00000524006	PDE3B	Q13370	1112 aa		14.32	□□□□□ -0.12
SPIDR-222	ENST00000524006	AMER1	Q5JTC6	1135 aa	Predicted RBP	14.32	□□□□□ -0.12
SPIDR-222	ENST00000524006	TXNDC2	Q86VQ3	553 aa		14.32	□□□□□ -0.12
SPIDR-222	ENST00000524006	SLIT1	O75093	1534 aa		14.31	□□□□□ -0.12
SPIDR-222	ENST00000524006	IRX6	P78412	446 aa	Predicted RBP	14.31	□□□□□ -0.12
SPIDR-222	ENST00000524006	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	14.31	□□□□□ -0.12
SPIDR-222	ENST00000524006	STK26	Q9P289	416 aa		14.31	□□□□□ -0.12
SPIDR-222	ENST00000524006	ATAD2	Q6PL18	1390 aa		14.31	□□□□□ -0.12
SPIDR-222	ENST00000524006	HDGF	P51858	240 aa	Known RBP	14.3	□□□□□ -0.12
SPIDR-222	ENST00000524006	PUS7	Q96PZ0	661 aa	Known RBP	14.3	□□□□□ -0.12
SPIDR-222	ENST00000524006	NSD2	O96028	1365 aa		14.3	□□□□□ -0.12
SPIDR-222	ENST00000524006	SRPK2	P78362	688 aa	Known RBP	14.29	□□□□□ -0.12
SPIDR-222	ENST00000524006	CGNL1	Q0VF96	1302 aa		14.29	□□□□□ -0.12
SPIDR-222	ENST00000524006	ANKRD36B	Q8N2N9	1353 aa		14.29	□□□□□ -0.12
SPIDR-222	ENST00000524006	NRXN3	Q9Y4C0	1643 aa		14.29	□□□□□ -0.12
SPIDR-222	ENST00000524006	SHPRH	Q149N8	1683 aa		14.28	□□□□□ -0.12
SPIDR-222	ENST00000524006	MORC1	Q86VD1	984 aa		14.28	□□□□□ -0.12
SPIDR-222	ENST00000524006	PPP4R2	Q9NY27	417 aa		14.28	□□□□□ -0.12
SPIDR-222	ENST00000524006	TMEM2	Q9UHN6	1383 aa		14.27	□□□□□ -0.12
SPIDR-222	ENST00000524006	SAFB2	Q14151	953 aa	Known RBP eCLIP	14.27	□□□□□ -0.13	2e-6	■■■■□ 22
SPIDR-222	ENST00000524006	CFAP53	Q96M91	514 aa		14.26	□□□□□ -0.13
SPIDR-222	ENST00000524006	SALL2	Q9Y467	1007 aa	Predicted RBP	14.26	□□□□□ -0.13
SPIDR-222	ENST00000524006	EID1	Q9Y6B2	187 aa		14.26	□□□□□ -0.13
SPIDR-222	ENST00000524006	SENP3-EIF4A1	A0A087X0R7	540 aa		14.25	□□□□□ -0.13
SPIDR-222	ENST00000524006	MINK1	Q8N4C8	1332 aa	Predicted RBP	14.24	□□□□□ -0.13
SPIDR-222	ENST00000524006	PRAM1	Q96QH2	718 aa		14.24	□□□□□ -0.13
SPIDR-222	ENST00000524006	TERF2IP	Q9NYB0	399 aa		14.24	□□□□□ -0.13
SPIDR-222	ENST00000524006	AKAP12	Q02952	1782 aa		14.23	□□□□□ -0.13
SPIDR-222	ENST00000524006	XIRP1	Q702N8	1843 aa	Known RBP	14.22	□□□□□ -0.13
SPIDR-222	ENST00000524006	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	14.22	□□□□□ -0.13
SPIDR-222	ENST00000524006	SLC12A5	Q9H2X9	1139 aa		14.22	□□□□□ -0.13
SPIDR-222	ENST00000524006	RGS17	Q9UGC6	210 aa	Predicted RBP	14.22	□□□□□ -0.13
SPIDR-222	ENST00000524006	MON2	Q7Z3U7	1717 aa		14.21	□□□□□ -0.13
SPIDR-222	ENST00000524006	SLC26A8	Q96RN1	970 aa		14.21	□□□□□ -0.13
SPIDR-222	ENST00000524006	CABP2	Q9NPB3	220 aa		14.21	□□□□□ -0.13
SPIDR-222	ENST00000524006	POLR3A	O14802	1390 aa	Predicted RBP	14.21	□□□□□ -0.14
SPIDR-222	ENST00000524006	TMEM94	Q12767	1356 aa		14.21	□□□□□ -0.14
SPIDR-222	ENST00000524006	ATP7B	P35670	1465 aa		14.2	□□□□□ -0.14
SPIDR-222	ENST00000524006	KCNA6	P17658	529 aa		14.2	□□□□□ -0.14
SPIDR-222	ENST00000524006	CARD14	Q9BXL6	1004 aa		14.2	□□□□□ -0.14
SPIDR-222	ENST00000524006	RCAN3	Q9UKA8	241 aa		14.2	□□□□□ -0.14
SPIDR-222	ENST00000524006	ADAMTS8	Q9UP79	889 aa		14.2	□□□□□ -0.14
SPIDR-222	ENST00000524006	FAM135B	Q49AJ0	1406 aa		14.2	□□□□□ -0.14
SPIDR-222	ENST00000524006	DIP2A	Q14689	1571 aa		14.19	□□□□□ -0.14
SPIDR-222	ENST00000524006	RBM33	Q96EV2	1170 aa	Known RBP	14.19	□□□□□ -0.14
SPIDR-222	ENST00000524006		A0A1W2PP64	1363 aa		14.19	□□□□□ -0.14
SPIDR-222	ENST00000524006	TNNT2	P45379	298 aa	Predicted RBP	14.18	□□□□□ -0.14
SPIDR-222	ENST00000524006	NGEF	Q8N5V2	710 aa		14.18	□□□□□ -0.14
SPIDR-222	ENST00000524006	ABCC11	Q96J66	1382 aa		14.18	□□□□□ -0.14
SPIDR-222	ENST00000524006	MAP2	P11137	1827 aa	Known RBP	14.18	□□□□□ -0.14
SPIDR-222	ENST00000524006	ADGRB2	O60241	1585 aa		14.17	□□□□□ -0.14
SPIDR-222	ENST00000524006	PROSER2	Q86WR7	435 aa	Predicted RBP	14.16	□□□□□ -0.14
SPIDR-222	ENST00000524006	CDC42BPG	Q6DT37	1551 aa		14.16	□□□□□ -0.14
SPIDR-222	ENST00000524006	TOPAZ1	Q8N9V7	1692 aa		14.15	□□□□□ -0.14
SPIDR-222	ENST00000524006	RRP1	P56182	461 aa	Known RBP	14.15	□□□□□ -0.14
SPIDR-222	ENST00000524006	CCDC146	Q8IYE0	955 aa		14.14	□□□□□ -0.15
SPIDR-222	ENST00000524006	CCDC136	Q96JN2	1154 aa		14.14	□□□□□ -0.15
SPIDR-222	ENST00000524006	CDK19	Q9BWU1	502 aa		14.14	□□□□□ -0.15

Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms