RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-222ENST00000524006 NISCHQ9Y2I1 1504 aa23.48■■□□□ 1.35
SPIDR-222ENST00000524006 ABCC9O60706 1549 aa20.84■□□□□ 0.93
SPIDR-222ENST00000524006 CCDC180Q9P1Z9 1646 aa20.64■□□□□ 0.9
SPIDR-222ENST00000524006 AEBP2Q6ZN18 517 aaPredicted RBP20.5■□□□□ 0.87
SPIDR-222ENST00000524006 ZCCHC6Q5VYS8 1495 aaKnown RBP19.8■□□□□ 0.76
SPIDR-222ENST00000524006 CHIC1Q5VXU3 224 aa19.79■□□□□ 0.76
SPIDR-222ENST00000524006 DNAJC5BQ9UF47 199 aa19.75■□□□□ 0.75
SPIDR-222ENST00000524006 RB1CC1Q8TDY2 1594 aa19.74■□□□□ 0.75
SPIDR-222ENST00000524006 NACADO15069 1562 aa19.58■□□□□ 0.73
SPIDR-222ENST00000524006 DCAF8L2P0C7V8 631 aa19.48■□□□□ 0.71
SPIDR-222ENST00000524006 DCAF1Q9Y4B6 1507 aa19.42■□□□□ 0.7
SPIDR-222ENST00000524006 PABPN1Q86U42 306 aaKnown RBP eCLIP19.42■□□□□ 0.7
SPIDR-222ENST00000524006 SHROOM4Q9ULL8 1493 aa19.41■□□□□ 0.7
SPIDR-222ENST00000524006 MYO15BQ96JP2 1530 aa19.28■□□□□ 0.68
SPIDR-222ENST00000524006 UNC13AQ9UPW8 1703 aa19.26■□□□□ 0.67
SPIDR-222ENST00000524006 BICRAQ9NZM4 1560 aa19.22■□□□□ 0.67
SPIDR-222ENST00000524006 SCRIBQ14160 1630 aa18.91■□□□□ 0.62
SPIDR-222ENST00000524006 CC2D2AQ9P2K1 1620 aa18.8■□□□□ 0.6
SPIDR-222ENST00000524006 CECR2Q9BXF3 1484 aa18.79■□□□□ 0.6
SPIDR-222ENST00000524006 SUPT5HO00267 1087 aaKnown RBP18.79■□□□□ 0.6
SPIDR-222ENST00000524006 EIF4G1Q04637 1599 aaKnown RBP18.73■□□□□ 0.59
SPIDR-222ENST00000524006 RSF1Q96T23 1441 aaPredicted RBP18.24■□□□□ 0.51
SPIDR-222ENST00000524006 BAZ1AQ9NRL2 1556 aaPredicted RBP18.21■□□□□ 0.51
SPIDR-222ENST00000524006 DNAJC5Q9H3Z4 198 aa18.19■□□□□ 0.5
SPIDR-222ENST00000524006 MROH2BQ7Z745 1585 aa18.13■□□□□ 0.49
SPIDR-222ENST00000524006 WIZO95785 1651 aa18.13■□□□□ 0.49
SPIDR-222ENST00000524006 NCAPD3P42695 1498 aa18.12■□□□□ 0.49
SPIDR-222ENST00000524006 SMARCA4P51532 1647 aa18.1■□□□□ 0.49
SPIDR-222ENST00000524006 ATAD2BQ9ULI0 1458 aa18.06■□□□□ 0.48
SPIDR-222ENST00000524006 CUX2O14529 1486 aa18■□□□□ 0.47
SPIDR-222ENST00000524006 ERCC6Q03468 1493 aa17.98■□□□□ 0.47
SPIDR-222ENST00000524006 SMARCA2P51531 1590 aa17.95■□□□□ 0.46
SPIDR-222ENST00000524006 TOP2AP11388 1531 aaKnown RBP17.94■□□□□ 0.46
SPIDR-222ENST00000524006 HMGXB3Q12766 1538 aa17.93■□□□□ 0.46
SPIDR-222ENST00000524006 NESP48681 1621 aa17.89■□□□□ 0.45
SPIDR-222ENST00000524006 BAZ1BQ9UIG0 1483 aaKnown RBP17.83■□□□□ 0.45
SPIDR-222ENST00000524006 PEG3Q9GZU2 1588 aa17.8■□□□□ 0.44
SPIDR-222ENST00000524006 THOC2Q8NI27 1593 aaKnown RBP17.7■□□□□ 0.42
SPIDR-222ENST00000524006 LAMC3Q9Y6N6 1575 aa17.68■□□□□ 0.42
SPIDR-222ENST00000524006 TRIM41Q8WV44 630 aa17.66■□□□□ 0.42
SPIDR-222ENST00000524006 CCDC88BA6NC98 1476 aa17.63■□□□□ 0.41
SPIDR-222ENST00000524006 PDS5BQ9NTI5 1447 aa17.61■□□□□ 0.41
SPIDR-222ENST00000524006 KIF21AQ7Z4S6 1674 aa17.58■□□□□ 0.41
SPIDR-222ENST00000524006 CADPSQ9ULU8 1353 aa17.56■□□□□ 0.4
SPIDR-222ENST00000524006 SENP3Q9H4L4 574 aaPredicted RBP17.51■□□□□ 0.39
SPIDR-222ENST00000524006 MRC2Q9UBG0 1479 aa17.47■□□□□ 0.39
SPIDR-222ENST00000524006 ABCC8Q09428 1581 aa17.46■□□□□ 0.39
SPIDR-222ENST00000524006 WDR62O43379 1518 aa17.43■□□□□ 0.38
SPIDR-222ENST00000524006 PRDM2Q13029 1718 aa17.43■□□□□ 0.38
SPIDR-222ENST00000524006 CEP164Q9UPV0 1460 aa17.36■□□□□ 0.37
SPIDR-222ENST00000524006 FAM9AQ8IZU1 332 aaPredicted RBP17.35■□□□□ 0.37
SPIDR-222ENST00000524006 FANCD2Q9BXW9 1451 aa17.35■□□□□ 0.37
SPIDR-222ENST00000524006 CFTRP13569 1480 aa17.33■□□□□ 0.37
SPIDR-222ENST00000524006 LOC105371045A0A1W2PR82 267 aa17.33■□□□□ 0.36
SPIDR-222ENST00000524006 PHF23Q9BUL5 403 aaPredicted RBP17.33■□□□□ 0.36
SPIDR-222ENST00000524006 WRNQ14191 1432 aaPredicted RBP eCLIP17.28■□□□□ 0.36
SPIDR-222ENST00000524006 EEA1Q15075 1411 aa17.25■□□□□ 0.35
SPIDR-222ENST00000524006 SYNJ1O43426 1573 aa17.23■□□□□ 0.35
SPIDR-222ENST00000524006 URB2Q14146 1524 aaKnown RBP17.23■□□□□ 0.35
SPIDR-222ENST00000524006 BIVM-ERCC5R4GMW8 1640 aa17.21■□□□□ 0.35
SPIDR-222ENST00000524006 OSCARQ8IYS5 282 aa17.17■□□□□ 0.34
SPIDR-222ENST00000524006 TOP2BQ02880 1626 aa17.17■□□□□ 0.34
SPIDR-222ENST00000524006 EHMT2Q96KQ7 1210 aa17.13■□□□□ 0.33
SPIDR-222ENST00000524006 KIF21BO75037 1637 aa17.08■□□□□ 0.32
SPIDR-222ENST00000524006 SOGA1O94964 1423 aa17.06■□□□□ 0.32
SPIDR-222ENST00000524006 ZNF608Q9ULD9 1512 aaPredicted RBP17.06■□□□□ 0.32
SPIDR-222ENST00000524006 GOLGA3Q08378 1498 aa17.05■□□□□ 0.32
SPIDR-222ENST00000524006 IFT140Q96RY7 1462 aa17.03■□□□□ 0.32
SPIDR-222ENST00000524006 TOPBP1Q92547 1522 aa17.01■□□□□ 0.31
SPIDR-222ENST00000524006 PCGF6Q9BYE7 350 aa17■□□□□ 0.31
SPIDR-222ENST00000524006 CSRNP3Q8WYN3 585 aa16.98■□□□□ 0.31
SPIDR-222ENST00000524006 CUX1P39880 1505 aa16.97■□□□□ 0.31
SPIDR-222ENST00000524006 RUSC2Q8N2Y8 1516 aa16.96■□□□□ 0.31
SPIDR-222ENST00000524006 RIMBP3CA6NJZ7 1639 aa16.94■□□□□ 0.3
SPIDR-222ENST00000524006 RIMBP3BA6NNM3 1639 aa16.94■□□□□ 0.3
SPIDR-222ENST00000524006 RIMBP3Q9UFD9 1639 aa16.94■□□□□ 0.3
SPIDR-222ENST00000524006 TNIKQ9UKE5 1360 aa16.93■□□□□ 0.3
SPIDR-222ENST00000524006 TRIM26Q12899 539 aaPredicted RBP16.93■□□□□ 0.3
SPIDR-222ENST00000524006 CEP162Q5TB80 1403 aa16.93■□□□□ 0.3
SPIDR-222ENST00000524006 DNMBPQ6XZF7 1577 aa16.91■□□□□ 0.3
SPIDR-222ENST00000524006 UBTFP17480 764 aaKnown RBP16.91■□□□□ 0.3
SPIDR-222ENST00000524006 EIF4G3O43432 1585 aaKnown RBP16.9■□□□□ 0.3
SPIDR-222ENST00000524006 ARHGEF11O15085 1522 aa16.9■□□□□ 0.3
SPIDR-222ENST00000524006 AQRO60306 1485 aaKnown RBP eCLIP16.87■□□□□ 0.29
SPIDR-222ENST00000524006 ERICH3Q5RHP9 1530 aa16.86■□□□□ 0.29
SPIDR-222ENST00000524006 TARBP1Q13395 1621 aaKnown RBP16.86■□□□□ 0.29
SPIDR-222ENST00000524006 KIF27Q86VH2 1401 aa16.84■□□□□ 0.29
SPIDR-222ENST00000524006 POLA1P09884 1462 aaPredicted RBP16.84■□□□□ 0.29
SPIDR-222ENST00000524006 CYB5RLQ6IPT4 315 aa16.8■□□□□ 0.28
SPIDR-222ENST00000524006 RAD54L2Q9Y4B4 1467 aa16.8■□□□□ 0.28
SPIDR-222ENST00000524006 FGD5Q6ZNL6 1462 aa16.78■□□□□ 0.28
SPIDR-222ENST00000524006 CHD1O14646 1710 aa16.76■□□□□ 0.27
SPIDR-222ENST00000524006 RAPGEF2Q9Y4G8 1499 aa16.76■□□□□ 0.27
SPIDR-222ENST00000524006 HRCP23327 699 aa16.76■□□□□ 0.27
SPIDR-222ENST00000524006 FBLN2P98095 1184 aa16.76■□□□□ 0.27
SPIDR-222ENST00000524006 TDRD9Q8NDG6 1382 aaKnown RBP16.76■□□□□ 0.27
SPIDR-222ENST00000524006 CLIP1P30622 1438 aa16.74■□□□□ 0.27
SPIDR-222ENST00000524006 ARAP1Q96P48 1450 aa16.73■□□□□ 0.27
SPIDR-222ENST00000524006 PRXQ9BXM0 1461 aa16.69■□□□□ 0.26
SPIDR-222ENST00000524006 SNAPC4Q5SXM2 1469 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms