RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 ZNF219Q9P2Y4 722 aaPredicted RBP4.56□□□□□ -1.68
MCF2-208ENST00000519895 SYT17Q9BSW7 474 aa4.56□□□□□ -1.68
MCF2-208ENST00000519895 GPATCH8Q9UKJ3 1502 aaKnown RBP4.56□□□□□ -1.68
MCF2-208ENST00000519895 CAMKK2Q96RR4 588 aa4.56□□□□□ -1.68
MCF2-208ENST00000519895 PZPP20742 1482 aa4.55□□□□□ -1.68
MCF2-208ENST00000519895 PLXNC1O60486 1568 aa4.55□□□□□ -1.68
MCF2-208ENST00000519895 PPEF1O14829 653 aaPredicted RBP4.55□□□□□ -1.68
MCF2-208ENST00000519895 C8orf37Q96NL8 207 aa4.55□□□□□ -1.68
MCF2-208ENST00000519895 ARIH1Q9Y4X5 557 aaPredicted RBP4.55□□□□□ -1.68
MCF2-208ENST00000519895 TNRQ92752 1358 aa4.55□□□□□ -1.68
MCF2-208ENST00000519895 SYNGAP1Q96PV0 1343 aa4.55□□□□□ -1.68
MCF2-208ENST00000519895 DCCP43146 1447 aa4.55□□□□□ -1.68
MCF2-208ENST00000519895 NWD2Q9ULI1 1742 aa4.55□□□□□ -1.68
MCF2-208ENST00000519895 PPP1R15AO75807 674 aaPredicted RBP4.55□□□□□ -1.68
MCF2-208ENST00000519895 RSPH4AQ5TD94 716 aa4.55□□□□□ -1.68
MCF2-208ENST00000519895 LRRC59Q96AG4 307 aaKnown RBP4.55□□□□□ -1.68
MCF2-208ENST00000519895 PTPN23Q9H3S7 1636 aa4.55□□□□□ -1.68
MCF2-208ENST00000519895 CDC42BPAQ5VT25 1732 aa4.54□□□□□ -1.68
MCF2-208ENST00000519895 KCNA6P17658 529 aa4.54□□□□□ -1.68
MCF2-208ENST00000519895 CTCFP49711 727 aaPredicted RBP4.54□□□□□ -1.68
MCF2-208ENST00000519895 CDC42BPBQ9Y5S2 1711 aa4.54□□□□□ -1.68
MCF2-208ENST00000519895 EIF2AK4Q9P2K8 1649 aaKnown RBP4.53□□□□□ -1.68
MCF2-208ENST00000519895 HABP4Q5JVS0 413 aaKnown RBP4.53□□□□□ -1.68
MCF2-208ENST00000519895 PXDNLA1KZ92 1463 aa4.53□□□□□ -1.68
MCF2-208ENST00000519895 YTHDC2Q9H6S0 1430 aaKnown RBP4.53□□□□□ -1.68
MCF2-208ENST00000519895 SLC17A8Q8NDX2 589 aa4.53□□□□□ -1.68
MCF2-208ENST00000519895 RPRD2Q5VT52 1461 aaKnown RBP4.53□□□□□ -1.68
MCF2-208ENST00000519895 INO80Q9ULG1 1556 aaPredicted RBP4.52□□□□□ -1.69
MCF2-208ENST00000519895 CICQ96RK0 1608 aaPredicted RBP4.52□□□□□ -1.69
MCF2-208ENST00000519895 PLEKHD1A6NEE1 506 aa4.52□□□□□ -1.69
MCF2-208ENST00000519895 KIDINS220Q9ULH0 1771 aa4.52□□□□□ -1.69
MCF2-208ENST00000519895 TET3O43151 1660 aa4.52□□□□□ -1.69
MCF2-208ENST00000519895 PRKCSHP14314 528 aaPredicted RBP4.52□□□□□ -1.69
MCF2-208ENST00000519895 PTGER2P43116 358 aa4.52□□□□□ -1.69
MCF2-208ENST00000519895 PRDM6Q9NQX0 595 aa4.51□□□□□ -1.69
MCF2-208ENST00000519895 UBR1Q8IWV7 1749 aa4.51□□□□□ -1.69
MCF2-208ENST00000519895 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.51□□□□□ -1.69
MCF2-208ENST00000519895 AKT1S1Q96B36 256 aa4.51□□□□□ -1.69
MCF2-208ENST00000519895 CLCN6P51797 869 aa4.51□□□□□ -1.69
MCF2-208ENST00000519895 EN1Q05925 392 aaPredicted RBP4.51□□□□□ -1.69
MCF2-208ENST00000519895 KRT27Q7Z3Y8 459 aa4.51□□□□□ -1.69
MCF2-208ENST00000519895 ADGRL2O95490 1459 aa4.5□□□□□ -1.69
MCF2-208ENST00000519895 SLIT2O94813 1529 aa4.5□□□□□ -1.69
MCF2-208ENST00000519895 CHD2O14647 1828 aaKnown RBP4.5□□□□□ -1.69
MCF2-208ENST00000519895 CEP350Q5VT06 3117 aa4.5□□□□□ -1.69
MCF2-208ENST00000519895 VIRMAQ69YN4 1812 aaKnown RBP4.5□□□□□ -1.69
MCF2-208ENST00000519895 UBTFP17480 764 aaKnown RBP4.5□□□□□ -1.69
MCF2-208ENST00000519895 FHDC1Q9C0D6 1143 aaPredicted RBP4.49□□□□□ -1.69
MCF2-208ENST00000519895 MYOM2P54296 1465 aa4.49□□□□□ -1.69
MCF2-208ENST00000519895 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.49□□□□□ -1.69
MCF2-208ENST00000519895 HNRNPUL2Q1KMD3 747 aaKnown RBP4.49□□□□□ -1.69
MCF2-208ENST00000519895 FAM122AQ96E09 287 aa4.49□□□□□ -1.69
MCF2-208ENST00000519895 SGIP1Q9BQI5 828 aa4.49□□□□□ -1.69
MCF2-208ENST00000519895 MBD5Q9P267 1494 aa4.48□□□□□ -1.69
MCF2-208ENST00000519895 MYOM3Q5VTT5 1437 aa4.48□□□□□ -1.69
MCF2-208ENST00000519895 PRAG1Q86YV5 1406 aa4.48□□□□□ -1.69
MCF2-208ENST00000519895 QSER1Q2KHR3 1735 aa4.48□□□□□ -1.69
MCF2-208ENST00000519895 GPR162Q16538 588 aa4.48□□□□□ -1.69
MCF2-208ENST00000519895 EFCAB2Q5VUJ9 269 aa4.48□□□□□ -1.69
MCF2-208ENST00000519895 NCOA2Q15596 1464 aa4.48□□□□□ -1.69
MCF2-208ENST00000519895 CADPS2Q86UW7 1296 aa4.48□□□□□ -1.69
MCF2-208ENST00000519895 PELP1Q8IZL8 1130 aaKnown RBP4.48□□□□□ -1.69
MCF2-208ENST00000519895 ADGRB3O60242 1522 aa4.48□□□□□ -1.69
MCF2-208ENST00000519895 THSD7AQ9UPZ6 1657 aa4.48□□□□□ -1.69
MCF2-208ENST00000519895 ROCK1Q13464 1354 aa4.48□□□□□ -1.69
MCF2-208ENST00000519895 LMTK2Q8IWU2 1503 aa4.48□□□□□ -1.69
MCF2-208ENST00000519895 SYCP2Q9BX26 1530 aa4.48□□□□□ -1.69
MCF2-208ENST00000519895 HAX1O00165 279 aa4.47□□□□□ -1.69
MCF2-208ENST00000519895 FXR1P51114 621 aaKnown RBP eCLIP4.47□□□□□ -1.69
MCF2-208ENST00000519895 CCDC141Q6ZP82 1450 aa4.47□□□□□ -1.69
MCF2-208ENST00000519895 TNRC6CQ9HCJ0 1690 aaKnown RBP4.47□□□□□ -1.69
MCF2-208ENST00000519895 NPM3O75607 178 aaKnown RBP4.47□□□□□ -1.69
MCF2-208ENST00000519895 U3KPZ7 1027 aaPredicted RBP4.47□□□□□ -1.69
MCF2-208ENST00000519895 RRBP1Q9P2E9 1410 aaKnown RBP4.47□□□□□ -1.69
MCF2-208ENST00000519895 EZH2Q15910 746 aaKnown RBP4.46□□□□□ -1.69
MCF2-208ENST00000519895 ARHGAP5Q13017 1502 aa4.46□□□□□ -1.7
MCF2-208ENST00000519895 ERBINQ96RT1 1412 aa4.46□□□□□ -1.7
MCF2-208ENST00000519895 RGS20O76081 388 aa4.46□□□□□ -1.7
MCF2-208ENST00000519895 SEPT12Q8IYM1 358 aa4.46□□□□□ -1.7
MCF2-208ENST00000519895 DUOX2Q9NRD8 1548 aa4.46□□□□□ -1.7
MCF2-208ENST00000519895 C11orf95C9JLR9 678 aaPredicted RBP4.46□□□□□ -1.7
MCF2-208ENST00000519895 PROSER2Q86WR7 435 aaPredicted RBP4.46□□□□□ -1.7
MCF2-208ENST00000519895 MTUS2Q5JR59 1369 aa4.46□□□□□ -1.7
MCF2-208ENST00000519895 CCNB3Q8WWL7 1395 aa4.46□□□□□ -1.7
MCF2-208ENST00000519895 CCDC85CA6NKD9 419 aa4.45□□□□□ -1.7
MCF2-208ENST00000519895 THSD7BQ9C0I4 1608 aa4.45□□□□□ -1.7
MCF2-208ENST00000519895 FOXN1O15353 648 aa4.45□□□□□ -1.7
MCF2-208ENST00000519895 AIDAQ96BJ3 306 aa4.45□□□□□ -1.7
MCF2-208ENST00000519895 UNC5CLQ8IV45 518 aa4.44□□□□□ -1.7
MCF2-208ENST00000519895 ARHGAP31Q2M1Z3 1444 aa4.44□□□□□ -1.7
MCF2-208ENST00000519895 VPS72Q15906 364 aa4.44□□□□□ -1.7
MCF2-208ENST00000519895 MTFR1LQ9H019 292 aa4.44□□□□□ -1.7
MCF2-208ENST00000519895 SPINK5Q9NQ38 1064 aaPredicted RBP4.44□□□□□ -1.7
MCF2-208ENST00000519895 DHX57Q6P158 1386 aaKnown RBP4.44□□□□□ -1.7
MCF2-208ENST00000519895 GCC2Q8IWJ2 1684 aa4.43□□□□□ -1.7
MCF2-208ENST00000519895 FOXK2Q01167 660 aa4.43□□□□□ -1.7
MCF2-208ENST00000519895 NBPF15Q8N660 670 aa4.43□□□□□ -1.7
MCF2-208ENST00000519895 BRINP3Q76B58 766 aa4.43□□□□□ -1.7
MCF2-208ENST00000519895 PIP4P2Q8N4L2 257 aa4.43□□□□□ -1.7
MCF2-208ENST00000519895 FXR2P51116 673 aaKnown RBP eCLIP4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms