RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PPM1GO15355 546 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-219ENST00000514096 STRN4Q9NRL3 753 aa10.97□□□□□ -0.65
LIMCH1-219ENST00000514096 CHRNA2Q15822 529 aa10.96□□□□□ -0.65
LIMCH1-219ENST00000514096 ADAMTS13Q76LX8 1427 aa10.96□□□□□ -0.65
LIMCH1-219ENST00000514096 CDK19Q9BWU1 502 aa10.96□□□□□ -0.65
LIMCH1-219ENST00000514096 C14orf93Q9H972 538 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-219ENST00000514096 ADGRB3O60242 1522 aa10.96□□□□□ -0.66
LIMCH1-219ENST00000514096 RPRD2Q5VT52 1461 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-219ENST00000514096 UBR1Q8IWV7 1749 aa10.96□□□□□ -0.66
LIMCH1-219ENST00000514096 LRRC7Q96NW7 1537 aa10.95□□□□□ -0.66
LIMCH1-219ENST00000514096 ST20-MTHFSA0A0A6YYL1 179 aa10.95□□□□□ -0.66
LIMCH1-219ENST00000514096 MROH2AA6NES4 1674 aa10.95□□□□□ -0.66
LIMCH1-219ENST00000514096 RPGRIP1LQ68CZ1 1315 aa10.95□□□□□ -0.66
LIMCH1-219ENST00000514096 KRT28Q7Z3Y7 464 aa10.94□□□□□ -0.66
LIMCH1-219ENST00000514096 ZFYVE9O95405 1425 aa10.94□□□□□ -0.66
LIMCH1-219ENST00000514096 FBLN1P23142 703 aa10.94□□□□□ -0.66
LIMCH1-219ENST00000514096 FAM182BQ5T319 152 aa10.94□□□□□ -0.66
LIMCH1-219ENST00000514096 LTV1Q96GA3 475 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-219ENST00000514096 CABP1Q9NZU7 370 aa10.94□□□□□ -0.66
LIMCH1-219ENST00000514096 PHF8Q9UPP1 1060 aa10.94□□□□□ -0.66
LIMCH1-219ENST00000514096 IQGAP3Q86VI3 1631 aa10.94□□□□□ -0.66
LIMCH1-219ENST00000514096 NEURL4Q96JN8 1562 aa10.94□□□□□ -0.66
LIMCH1-219ENST00000514096 UNC13BO14795 1591 aa10.93□□□□□ -0.66
LIMCH1-219ENST00000514096 IQGAP1P46940 1657 aa10.93□□□□□ -0.66
LIMCH1-219ENST00000514096 UBE2Q2Q8WVN8 375 aa10.92□□□□□ -0.66
LIMCH1-219ENST00000514096 DEPDC5O75140 1603 aa10.92□□□□□ -0.66
LIMCH1-219ENST00000514096 NUDT16Q96DE0 195 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-219ENST00000514096 LMTK2Q8IWU2 1503 aa10.92□□□□□ -0.66
LIMCH1-219ENST00000514096 ZC3H13Q5T200 1668 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-219ENST00000514096 ABTB2Q8N961 1025 aa10.92□□□□□ -0.66
LIMCH1-219ENST00000514096 VWDEQ8N2E2 1590 aa10.91□□□□□ -0.66
LIMCH1-219ENST00000514096 CENPJQ9HC77 1338 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-219ENST00000514096 TMEM131LA2VDJ0 1609 aa10.91□□□□□ -0.66
LIMCH1-219ENST00000514096 SPHKAPQ2M3C7 1700 aa10.91□□□□□ -0.66
LIMCH1-219ENST00000514096 SLC12A5Q9H2X9 1139 aa10.9□□□□□ -0.66
LIMCH1-219ENST00000514096 YTHDC2Q9H6S0 1430 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-219ENST00000514096 LRRC59Q96AG4 307 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-219ENST00000514096 SENP3-EIF4A1A0A087X0R7 540 aa10.89□□□□□ -0.67
LIMCH1-219ENST00000514096 NLRP6P59044 892 aa10.89□□□□□ -0.67
LIMCH1-219ENST00000514096 ARHGAP23Q9P227 1491 aa10.89□□□□□ -0.67
LIMCH1-219ENST00000514096 ZRANB1Q9UGI0 708 aa10.89□□□□□ -0.67
LIMCH1-219ENST00000514096 LTBP4Q8N2S1 1624 aa10.89□□□□□ -0.67
LIMCH1-219ENST00000514096 WASLO00401 505 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-219ENST00000514096 TRPM2O94759 1503 aa10.88□□□□□ -0.67
LIMCH1-219ENST00000514096 SPATA31E1Q6ZUB1 1445 aa10.88□□□□□ -0.67
LIMCH1-219ENST00000514096 CSB-PGBD3P0DP91 1061 aa10.88□□□□□ -0.67
LIMCH1-219ENST00000514096 PRDM11Q9NQV5 511 aa10.88□□□□□ -0.67
LIMCH1-219ENST00000514096 KIF1BO60333 1816 aa10.88□□□□□ -0.67
LIMCH1-219ENST00000514096 KLHL34Q8N239 644 aa10.87□□□□□ -0.67
LIMCH1-219ENST00000514096 KAT6BQ8WYB5 2073 aa10.87□□□□□ -0.67
LIMCH1-219ENST00000514096 SLIT1O75093 1534 aa10.87□□□□□ -0.67
LIMCH1-219ENST00000514096 EVA1CP58658 441 aa10.87□□□□□ -0.67
LIMCH1-219ENST00000514096 POTEAQ6S8J7 498 aa10.87□□□□□ -0.67
LIMCH1-219ENST00000514096 POLR1AO95602 1720 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-219ENST00000514096 QTRT2Q9H974 415 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-219ENST00000514096 ACEP12821 1306 aa10.85□□□□□ -0.67
LIMCH1-219ENST00000514096 PRR36Q9H6K5 1346 aa10.85□□□□□ -0.67
LIMCH1-219ENST00000514096 NPHP3Q7Z494 1330 aa10.85□□□□□ -0.67
LIMCH1-219ENST00000514096 USP21Q9UK80 565 aa10.85□□□□□ -0.67
LIMCH1-219ENST00000514096 AFF2P51816 1311 aa10.85□□□□□ -0.67
LIMCH1-219ENST00000514096 NEXMIFQ5QGS0 1516 aa10.84□□□□□ -0.67
LIMCH1-219ENST00000514096 ALKQ9UM73 1620 aa10.84□□□□□ -0.67
LIMCH1-219ENST00000514096 ARXQ96QS3 562 aa10.84□□□□□ -0.67
LIMCH1-219ENST00000514096 MED14O60244 1454 aa10.84□□□□□ -0.67
LIMCH1-219ENST00000514096 STRCP1A6NGW2 1772 aa10.84□□□□□ -0.67
LIMCH1-219ENST00000514096 LRPPRCP42704 1394 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-219ENST00000514096 GPRASP1Q5JY77 1395 aa10.83□□□□□ -0.68
LIMCH1-219ENST00000514096 ZEB1P37275 1124 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-219ENST00000514096 CCDC61Q9Y6R9 512 aa10.83□□□□□ -0.68
LIMCH1-219ENST00000514096 GGNBP2Q9H3C7 697 aa10.83□□□□□ -0.68
LIMCH1-219ENST00000514096 ADGRL3Q9HAR2 1447 aa10.83□□□□□ -0.68
LIMCH1-219ENST00000514096 ZNF142P52746 1687 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-219ENST00000514096 PDE4CQ08493 712 aa10.82□□□□□ -0.68
LIMCH1-219ENST00000514096 BTG4Q9NY30 223 aa10.82□□□□□ -0.68
LIMCH1-219ENST00000514096 TIMELESSQ9UNS1 1208 aa10.82□□□□□ -0.68
LIMCH1-219ENST00000514096 EP400Q96L91 3159 aa10.82□□□□□ -0.68
LIMCH1-219ENST00000514096 EVC2Q86UK5 1308 aa10.82□□□□□ -0.68
LIMCH1-219ENST00000514096 HSPA5P11021 654 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-219ENST00000514096 AMER1Q5JTC6 1135 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-219ENST00000514096 CPS1P31327 1500 aa10.81□□□□□ -0.68
LIMCH1-219ENST00000514096 FAM98CQ17RN3 349 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-219ENST00000514096 NME9Q86XW9 330 aa10.81□□□□□ -0.68
LIMCH1-219ENST00000514096 NEFLP07196 543 aa10.8□□□□□ -0.68
LIMCH1-219ENST00000514096 PIK3C2GO75747 1445 aa10.8□□□□□ -0.68
LIMCH1-219ENST00000514096 C1orf167Q5SNV9 1468 aa10.8□□□□□ -0.68
LIMCH1-219ENST00000514096 EIF4G2P78344 907 aaKnown RBP eCLIP10.79□□□□□ -0.68
LIMCH1-219ENST00000514096 ABCC11Q96J66 1382 aa10.79□□□□□ -0.68
LIMCH1-219ENST00000514096 CC2D1BQ5T0F9 858 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-219ENST00000514096 RXRBP28702 533 aa10.78□□□□□ -0.68
LIMCH1-219ENST00000514096 JCADQ9P266 1359 aa10.78□□□□□ -0.68
LIMCH1-219ENST00000514096 RRS1Q15050 365 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-219ENST00000514096 RGS17Q9UGC6 210 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-219ENST00000514096 TMF1P82094 1093 aa10.77□□□□□ -0.69
LIMCH1-219ENST00000514096 HDGFL2Q7Z4V5 671 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-219ENST00000514096 GOLGB1Q14789 3259 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-219ENST00000514096 NLRP2Q9NX02 1062 aa10.77□□□□□ -0.69
LIMCH1-219ENST00000514096 MST1RQ04912 1400 aa10.77□□□□□ -0.69
LIMCH1-219ENST00000514096 PRAG1Q86YV5 1406 aa10.77□□□□□ -0.69
LIMCH1-219ENST00000514096 USP47Q96K76 1375 aa10.77□□□□□ -0.69
LIMCH1-219ENST00000514096 TOM1L2Q6ZVM7 507 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms