RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 PXDNQ92626 1479 aa29.15■■■□□ 2.26
HMGCS1-206ENST00000511774 ZRANB1Q9UGI0 708 aa29.14■■■□□ 2.26
HMGCS1-206ENST00000511774 XPCQ01831 940 aaPredicted RBP29.09■■■□□ 2.25
HMGCS1-206ENST00000511774 HFM1A2PYH4 1435 aa29.09■■■□□ 2.25
HMGCS1-206ENST00000511774 PPLO60437 1756 aa29.08■■■□□ 2.25
HMGCS1-206ENST00000511774 PPARGC1BQ86YN6 1023 aaKnown RBP29.08■■■□□ 2.25
HMGCS1-206ENST00000511774 CDC42BPGQ6DT37 1551 aa29.08■■■□□ 2.25
HMGCS1-206ENST00000511774 GLI3P10071 1580 aa29.06■■■□□ 2.24
HMGCS1-206ENST00000511774 VGFO15240 615 aaPredicted RBP29.06■■■□□ 2.24
HMGCS1-206ENST00000511774 ESCO1Q5FWF5 840 aa29.06■■■□□ 2.24
HMGCS1-206ENST00000511774 GJD4Q96KN9 370 aaPredicted RBP29.05■■■□□ 2.24
HMGCS1-206ENST00000511774 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.05■■■□□ 2.24
HMGCS1-206ENST00000511774 NPHP3Q7Z494 1330 aa29.04■■■□□ 2.24
HMGCS1-206ENST00000511774 BRWD3Q6RI45 1802 aa29.04■■■□□ 2.24
HMGCS1-206ENST00000511774 FOXO3O43524 673 aa29.03■■■□□ 2.24
HMGCS1-206ENST00000511774 CCDC125Q86Z20 511 aa29.02■■■□□ 2.24
HMGCS1-206ENST00000511774 NAIPQ13075 1403 aa29.01■■■□□ 2.23
HMGCS1-206ENST00000511774 RALGAPBQ86X10 1494 aa29■■■□□ 2.23
HMGCS1-206ENST00000511774 SLIT2O94813 1529 aa28.99■■■□□ 2.23
HMGCS1-206ENST00000511774 NUTM2FA1L443 756 aa28.97■■■□□ 2.23
HMGCS1-206ENST00000511774 RPGRIP1LQ68CZ1 1315 aa28.96■■■□□ 2.23
HMGCS1-206ENST00000511774 FOXD1Q16676 465 aa28.96■■■□□ 2.23
HMGCS1-206ENST00000511774 WAPLQ7Z5K2 1190 aa28.95■■■□□ 2.22
HMGCS1-206ENST00000511774 DEFB132Q7Z7B7 95 aa28.95■■■□□ 2.22
HMGCS1-206ENST00000511774 BLMP54132 1417 aaPredicted RBP28.94■■■□□ 2.22
HMGCS1-206ENST00000511774 UNC5CLQ8IV45 518 aa28.93■■■□□ 2.22
HMGCS1-206ENST00000511774 ADGRF5Q8IZF2 1346 aa28.93■■■□□ 2.22
HMGCS1-206ENST00000511774 PLEKHH1Q9ULM0 1364 aa28.92■■■□□ 2.22
HMGCS1-206ENST00000511774 USP32Q8NFA0 1604 aa28.91■■■□□ 2.22
HMGCS1-206ENST00000511774 FMN2Q9NZ56 1722 aa28.91■■■□□ 2.22
HMGCS1-206ENST00000511774 TECPR2O15040 1411 aa28.9■■■□□ 2.22
HMGCS1-206ENST00000511774 STK26Q9P289 416 aa28.9■■■□□ 2.22
HMGCS1-206ENST00000511774 SPATA31A3Q5VYP0 1347 aa28.9■■■□□ 2.22
HMGCS1-206ENST00000511774 LRPPRCP42704 1394 aaKnown RBP28.87■■■□□ 2.21
HMGCS1-206ENST00000511774 RGPD8O14715 1765 aaPredicted RBP28.86■■■□□ 2.21
HMGCS1-206ENST00000511774 KNDC1Q76NI1 1749 aa28.86■■■□□ 2.21
HMGCS1-206ENST00000511774 IFT172Q9UG01 1749 aa28.85■■■□□ 2.21
HMGCS1-206ENST00000511774 RRBP1Q9P2E9 1410 aaKnown RBP28.85■■■□□ 2.21
HMGCS1-206ENST00000511774 KIF1AQ12756 1690 aa28.84■■■□□ 2.21
HMGCS1-206ENST00000511774 PLCH1Q4KWH8 1693 aa28.84■■■□□ 2.21
HMGCS1-206ENST00000511774 SEPT12Q8IYM1 358 aa28.84■■■□□ 2.21
HMGCS1-206ENST00000511774 LRP5O75197 1615 aa28.83■■■□□ 2.21
HMGCS1-206ENST00000511774 TMEM132EQ6IEE7 984 aa28.83■■■□□ 2.21
HMGCS1-206ENST00000511774 SLC4A1APQ9BWU0 796 aaKnown RBP28.82■■■□□ 2.2
HMGCS1-206ENST00000511774 ABCA3Q99758 1704 aa28.82■■■□□ 2.2
HMGCS1-206ENST00000511774 ABCC11Q96J66 1382 aa28.81■■■□□ 2.2
HMGCS1-206ENST00000511774 CABLES1Q8TDN4 633 aa28.81■■■□□ 2.2
HMGCS1-206ENST00000511774 CCDC144AA2RUR9 1427 aa28.8■■■□□ 2.2
HMGCS1-206ENST00000511774 KRT28Q7Z3Y7 464 aa28.8■■■□□ 2.2
HMGCS1-206ENST00000511774 SPATA31E1Q6ZUB1 1445 aa28.78■■■□□ 2.2
HMGCS1-206ENST00000511774 NWD2Q9ULI1 1742 aa28.78■■■□□ 2.2
HMGCS1-206ENST00000511774 VPS72Q15906 364 aa28.78■■■□□ 2.2
HMGCS1-206ENST00000511774 TNS3Q68CZ2 1445 aa28.77■■■□□ 2.2
HMGCS1-206ENST00000511774 ONECUT3O60422 494 aaPredicted RBP28.76■■■□□ 2.19
HMGCS1-206ENST00000511774 PLEKHG5O94827 1062 aa28.76■■■□□ 2.19
HMGCS1-206ENST00000511774 RGL3Q3MIN7 710 aa28.76■■■□□ 2.19
HMGCS1-206ENST00000511774 PIK3C2GO75747 1445 aa28.74■■■□□ 2.19
HMGCS1-206ENST00000511774 YTHDC2Q9H6S0 1430 aaKnown RBP28.73■■■□□ 2.19
HMGCS1-206ENST00000511774 PSDA5PKW4 1024 aaPredicted RBP28.72■■■□□ 2.19
HMGCS1-206ENST00000511774 KRT27Q7Z3Y8 459 aa28.72■■■□□ 2.19
HMGCS1-206ENST00000511774 SF3B2Q13435 895 aaKnown RBP28.71■■■□□ 2.19
HMGCS1-206ENST00000511774 NRAPQ86VF7 1730 aa28.7■■■□□ 2.19
HMGCS1-206ENST00000511774 PHF8Q9UPP1 1060 aa28.7■■■□□ 2.18
HMGCS1-206ENST00000511774 CCDC9Q9Y3X0 531 aaKnown RBP28.69■■■□□ 2.18
HMGCS1-206ENST00000511774 ANKRD30BQ9BXX2 1392 aa28.69■■■□□ 2.18
HMGCS1-206ENST00000511774 NRXN1Q9ULB1 1477 aa28.68■■■□□ 2.18
HMGCS1-206ENST00000511774 FAM83GA6ND36 823 aa28.68■■■□□ 2.18
HMGCS1-206ENST00000511774 HAP1P54257 671 aaPredicted RBP28.67■■■□□ 2.18
HMGCS1-206ENST00000511774 SBNO1A3KN83 1393 aa28.66■■■□□ 2.18
HMGCS1-206ENST00000511774 HRCP23327 699 aa28.66■■■□□ 2.18
HMGCS1-206ENST00000511774 PSME1Q06323 249 aa28.62■■■□□ 2.17
HMGCS1-206ENST00000511774 LMOD2Q6P5Q4 547 aa28.62■■■□□ 2.17
HMGCS1-206ENST00000511774 SIRT1Q96EB6 747 aa28.62■■■□□ 2.17
HMGCS1-206ENST00000511774 TRPM3Q9HCF6 1732 aaPredicted RBP28.62■■■□□ 2.17
HMGCS1-206ENST00000511774 FAM98CQ17RN3 349 aaKnown RBP28.61■■■□□ 2.17
HMGCS1-206ENST00000511774 FAM182BQ5T319 152 aa28.6■■■□□ 2.17
HMGCS1-206ENST00000511774 ARHGEF10O15013 1369 aa28.6■■■□□ 2.17
HMGCS1-206ENST00000511774 BAG6P46379 1132 aa28.59■■■□□ 2.17
HMGCS1-206ENST00000511774 SAFB2Q14151 953 aaKnown RBP eCLIP28.59■■■□□ 2.17
HMGCS1-206ENST00000511774 EN1Q05925 392 aaPredicted RBP28.58■■■□□ 2.17
HMGCS1-206ENST00000511774 C14orf93Q9H972 538 aaKnown RBP28.58■■■□□ 2.17
HMGCS1-206ENST00000511774 RGPD1P0DJD0 1748 aa28.57■■■□□ 2.16
HMGCS1-206ENST00000511774 A0A0G2JS52 829 aa28.57■■■□□ 2.16
HMGCS1-206ENST00000511774 MYT1Q01538 1121 aa28.57■■■□□ 2.16
HMGCS1-206ENST00000511774 PMFBP1Q8TBY8 1022 aa28.57■■■□□ 2.16
HMGCS1-206ENST00000511774 ALS2Q96Q42 1657 aa28.57■■■□□ 2.16
HMGCS1-206ENST00000511774 CFAP70Q5T0N1 1121 aa28.56■■■□□ 2.16
HMGCS1-206ENST00000511774 TNS1Q9HBL0 1735 aaKnown RBP28.56■■■□□ 2.16
HMGCS1-206ENST00000511774 PRAM1Q96QH2 718 aa28.55■■■□□ 2.16
HMGCS1-206ENST00000511774 BTG4Q9NY30 223 aa28.55■■■□□ 2.16
HMGCS1-206ENST00000511774 COL14A1Q05707 1796 aaKnown RBP28.54■■■□□ 2.16
HMGCS1-206ENST00000511774 CRYBG1Q9Y4K1 1723 aa28.54■■■□□ 2.16
HMGCS1-206ENST00000511774 MPHOSPH9Q99550 1183 aa28.53■■■□□ 2.16
HMGCS1-206ENST00000511774 THSD7AQ9UPZ6 1657 aa28.53■■■□□ 2.16
HMGCS1-206ENST00000511774 R3HDM1Q15032 1099 aaKnown RBP28.51■■■□□ 2.15
HMGCS1-206ENST00000511774 ANKARQ7Z5J8 1434 aa28.5■■■□□ 2.15
HMGCS1-206ENST00000511774 ADGRB2O60241 1585 aa28.5■■■□□ 2.15
HMGCS1-206ENST00000511774 DHX57Q6P158 1386 aaKnown RBP28.5■■■□□ 2.15
HMGCS1-206ENST00000511774 SPATA31A5Q5VU36 1347 aa28.48■■■□□ 2.15
HMGCS1-206ENST00000511774 SPATA31A7Q8IWB4 1347 aa28.48■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms