RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 BCANQ96GW7 911 aa14.55□□□□□ -0.08
NUP54-203ENST00000504173 SIN3AQ96ST3 1273 aa14.55□□□□□ -0.08
NUP54-203ENST00000504173 MST1RQ04912 1400 aa14.55□□□□□ -0.08
NUP54-203ENST00000504173 RIMS2Q9UQ26 1411 aa14.55□□□□□ -0.08
NUP54-203ENST00000504173 NEUROD1Q13562 356 aa14.54□□□□□ -0.08
NUP54-203ENST00000504173 CLSPNQ9HAW4 1339 aa14.53□□□□□ -0.08
NUP54-203ENST00000504173 PPP1R15AO75807 674 aaPredicted RBP14.52□□□□□ -0.09
NUP54-203ENST00000504173 HDGFP51858 240 aaKnown RBP14.52□□□□□ -0.09
NUP54-203ENST00000504173 RPGRIP1LQ68CZ1 1315 aa14.51□□□□□ -0.09
NUP54-203ENST00000504173 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.51□□□□□ -0.09
NUP54-203ENST00000504173 NEXMIFQ5QGS0 1516 aa14.51□□□□□ -0.09
NUP54-203ENST00000504173 ADAMTS13Q76LX8 1427 aa14.5□□□□□ -0.09
NUP54-203ENST00000504173 PSDA5PKW4 1024 aaPredicted RBP14.5□□□□□ -0.09
NUP54-203ENST00000504173 SF3B2Q13435 895 aaKnown RBP14.5□□□□□ -0.09
NUP54-203ENST00000504173 GJD4Q96KN9 370 aaPredicted RBP14.49□□□□□ -0.09
NUP54-203ENST00000504173 LAMC1P11047 1609 aa14.48□□□□□ -0.09
NUP54-203ENST00000504173 PPLO60437 1756 aa14.48□□□□□ -0.09
NUP54-203ENST00000504173 IFT172Q9UG01 1749 aa14.47□□□□□ -0.09
NUP54-203ENST00000504173 VGFO15240 615 aaPredicted RBP14.47□□□□□ -0.09
NUP54-203ENST00000504173 DDX17Q92841 729 aaKnown RBP14.46□□□□□ -0.09
NUP54-203ENST00000504173 TONSLQ96HA7 1378 aa14.46□□□□□ -0.1
NUP54-203ENST00000504173 DCAF11Q8TEB1 546 aa14.45□□□□□ -0.1
NUP54-203ENST00000504173 COL22A1Q8NFW1 1626 aaPredicted RBP14.44□□□□□ -0.1
NUP54-203ENST00000504173 MYOM2P54296 1465 aa14.44□□□□□ -0.1
NUP54-203ENST00000504173 SOS2Q07890 1332 aaPredicted RBP14.44□□□□□ -0.1
NUP54-203ENST00000504173 L3MBTL2Q969R5 705 aa14.44□□□□□ -0.1
NUP54-203ENST00000504173 KDM2AQ9Y2K7 1162 aa14.44□□□□□ -0.1
NUP54-203ENST00000504173 ADGRF5Q8IZF2 1346 aa14.43□□□□□ -0.1
NUP54-203ENST00000504173 PTPRUQ92729 1446 aa14.43□□□□□ -0.1
NUP54-203ENST00000504173 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.42□□□□□ -0.1
NUP54-203ENST00000504173 STAC3Q96MF2 364 aa14.42□□□□□ -0.1
NUP54-203ENST00000504173 AMOTL2Q9Y2J4 779 aa14.42□□□□□ -0.1
NUP54-203ENST00000504173 RALGAPBQ86X10 1494 aa14.42□□□□□ -0.1
NUP54-203ENST00000504173 GLI3P10071 1580 aa14.42□□□□□ -0.1
NUP54-203ENST00000504173 SENP3-EIF4A1A0A087X0R7 540 aa14.4□□□□□ -0.1
NUP54-203ENST00000504173 BAG6P46379 1132 aa14.4□□□□□ -0.1
NUP54-203ENST00000504173 PIK3C2GO75747 1445 aa14.4□□□□□ -0.1
NUP54-203ENST00000504173 ADGRL3Q9HAR2 1447 aa14.4□□□□□ -0.1
NUP54-203ENST00000504173 NRXN1Q9ULB1 1477 aa14.39□□□□□ -0.11
NUP54-203ENST00000504173 XRN1Q8IZH2 1706 aaKnown RBP14.39□□□□□ -0.11
NUP54-203ENST00000504173 NRXN3Q9Y4C0 1643 aa14.39□□□□□ -0.11
NUP54-203ENST00000504173 BRWD3Q6RI45 1802 aa14.38□□□□□ -0.11
NUP54-203ENST00000504173 C1orf167Q5SNV9 1468 aa14.38□□□□□ -0.11
NUP54-203ENST00000504173 TIMELESSQ9UNS1 1208 aa14.37□□□□□ -0.11
NUP54-203ENST00000504173 MARF1Q9Y4F3 1742 aaKnown RBP14.36□□□□□ -0.11
NUP54-203ENST00000504173 PRAG1Q86YV5 1406 aa14.36□□□□□ -0.11
NUP54-203ENST00000504173 R3HDM1Q15032 1099 aaKnown RBP14.36□□□□□ -0.11
NUP54-203ENST00000504173 UNC5CLQ8IV45 518 aa14.36□□□□□ -0.11
NUP54-203ENST00000504173 SLIT2O94813 1529 aa14.36□□□□□ -0.11
NUP54-203ENST00000504173 ONECUT3O60422 494 aaPredicted RBP14.35□□□□□ -0.11
NUP54-203ENST00000504173 DISP2A7MBM2 1401 aa14.34□□□□□ -0.11
NUP54-203ENST00000504173 CFAP70Q5T0N1 1121 aa14.34□□□□□ -0.11
NUP54-203ENST00000504173 SEPT12Q8IYM1 358 aa14.34□□□□□ -0.11
NUP54-203ENST00000504173 C14orf93Q9H972 538 aaKnown RBP14.34□□□□□ -0.11
NUP54-203ENST00000504173 ZNF784Q8NCA9 323 aaPredicted RBP14.33□□□□□ -0.12
NUP54-203ENST00000504173 METP08581 1390 aa14.33□□□□□ -0.12
NUP54-203ENST00000504173 DCAF8L1A6NGE4 600 aa14.32□□□□□ -0.12
NUP54-203ENST00000504173 C1QTNF8P60827 252 aa14.32□□□□□ -0.12
NUP54-203ENST00000504173 KRT27Q7Z3Y8 459 aa14.32□□□□□ -0.12
NUP54-203ENST00000504173 NBPF8Q3BBV2 869 aa14.31□□□□□ -0.12
NUP54-203ENST00000504173 NINLQ9Y2I6 1382 aa14.31□□□□□ -0.12
NUP54-203ENST00000504173 CEP350Q5VT06 3117 aa14.3□□□□□ -0.12
NUP54-203ENST00000504173 NALCNQ8IZF0 1738 aa14.3□□□□□ -0.12
NUP54-203ENST00000504173 KIAA1210Q9ULL0 1709 aa14.3□□□□□ -0.12
NUP54-203ENST00000504173 TMEM132EQ6IEE7 984 aa14.3□□□□□ -0.12
NUP54-203ENST00000504173 EN1Q05925 392 aaPredicted RBP14.29□□□□□ -0.12
NUP54-203ENST00000504173 TRPM1Q7Z4N2 1603 aa14.29□□□□□ -0.12
NUP54-203ENST00000504173 ORAI2Q96SN7 254 aa14.28□□□□□ -0.12
NUP54-203ENST00000504173 ADGRB1O14514 1584 aa14.27□□□□□ -0.12
NUP54-203ENST00000504173 YTHDC2Q9H6S0 1430 aaKnown RBP14.27□□□□□ -0.12
NUP54-203ENST00000504173 ROCK2O75116 1388 aaKnown RBP14.27□□□□□ -0.12
NUP54-203ENST00000504173 LRPPRCP42704 1394 aaKnown RBP14.27□□□□□ -0.12
NUP54-203ENST00000504173 VPS72Q15906 364 aa14.27□□□□□ -0.13
NUP54-203ENST00000504173 NBPF1Q3BBV0 1214 aa14.27□□□□□ -0.13
NUP54-203ENST00000504173 STK26Q9P289 416 aa14.27□□□□□ -0.13
NUP54-203ENST00000504173 RGPD1P0DJD0 1748 aa14.27□□□□□ -0.13
NUP54-203ENST00000504173 PXDNQ92626 1479 aa14.25□□□□□ -0.13
NUP54-203ENST00000504173 NPHP3Q7Z494 1330 aa14.24□□□□□ -0.13
NUP54-203ENST00000504173 KNDC1Q76NI1 1749 aa14.24□□□□□ -0.13
NUP54-203ENST00000504173 ABCC11Q96J66 1382 aa14.23□□□□□ -0.13
NUP54-203ENST00000504173 TECPR2O15040 1411 aa14.23□□□□□ -0.13
NUP54-203ENST00000504173 PARD3Q8TEW0 1356 aa14.22□□□□□ -0.13
NUP54-203ENST00000504173 CARD11Q9BXL7 1154 aa14.22□□□□□ -0.13
NUP54-203ENST00000504173 TRAK1Q9UPV9 953 aa14.22□□□□□ -0.13
NUP54-203ENST00000504173 GPRASP1Q5JY77 1395 aa14.22□□□□□ -0.13
NUP54-203ENST00000504173 ROBO2Q9HCK4 1378 aa14.22□□□□□ -0.13
NUP54-203ENST00000504173 CAMKK2Q96RR4 588 aa14.21□□□□□ -0.13
NUP54-203ENST00000504173 TNS1Q9HBL0 1735 aaKnown RBP14.21□□□□□ -0.14
NUP54-203ENST00000504173 DLC1Q96QB1 1528 aa14.2□□□□□ -0.14
NUP54-203ENST00000504173 USP32Q8NFA0 1604 aa14.2□□□□□ -0.14
NUP54-203ENST00000504173 EZH2Q15910 746 aaKnown RBP14.2□□□□□ -0.14
NUP54-203ENST00000504173 SIRT1Q96EB6 747 aa14.19□□□□□ -0.14
NUP54-203ENST00000504173 SPON1Q9HCB6 807 aa14.19□□□□□ -0.14
NUP54-203ENST00000504173 POGKQ9P215 609 aa14.19□□□□□ -0.14
NUP54-203ENST00000504173 PPP1R1BQ9UD71 204 aaPredicted RBP14.19□□□□□ -0.14
NUP54-203ENST00000504173 NWD2Q9ULI1 1742 aa14.18□□□□□ -0.14
NUP54-203ENST00000504173 ADGRB2O60241 1585 aa14.18□□□□□ -0.14
NUP54-203ENST00000504173 CAMTA1Q9Y6Y1 1673 aa14.18□□□□□ -0.14
NUP54-203ENST00000504173 ZEB1P37275 1124 aaPredicted RBP14.18□□□□□ -0.14
NUP54-203ENST00000504173 WAPLQ7Z5K2 1190 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms