RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 PRKAR2BP31323 418 aa17.05■□□□□ 0.32
GPC1-209ENST00000495100 ZRANB1Q9UGI0 708 aa17.05■□□□□ 0.32
GPC1-209ENST00000495100 ADGRL2O95490 1459 aa17.05■□□□□ 0.32
GPC1-209ENST00000495100 ITSN2Q9NZM3 1697 aa17.05■□□□□ 0.32
GPC1-209ENST00000495100 LMOD2Q6P5Q4 547 aa17.05■□□□□ 0.32
GPC1-209ENST00000495100 TXNDC2Q86VQ3 553 aa17.05■□□□□ 0.32
GPC1-209ENST00000495100 FOXD4L6Q3SYB3 417 aaPredicted RBP17.04■□□□□ 0.32
GPC1-209ENST00000495100 FOXD4L3Q6VB84 417 aaPredicted RBP17.04■□□□□ 0.32
GPC1-209ENST00000495100 SSH1Q8WYL5 1049 aa17.03■□□□□ 0.32
GPC1-209ENST00000495100 DIAPH1O60610 1272 aaKnown RBP17.03■□□□□ 0.32
GPC1-209ENST00000495100 ARHGEF12Q9NZN5 1544 aa17.02■□□□□ 0.32
GPC1-209ENST00000495100 HSP90AB1P08238 724 aaKnown RBP17.02■□□□□ 0.32
GPC1-209ENST00000495100 PMFBP1Q8TBY8 1022 aa17.02■□□□□ 0.32
GPC1-209ENST00000495100 TERF2IPQ9NYB0 399 aa17.02■□□□□ 0.32
GPC1-209ENST00000495100 MIS18AQ9NYP9 233 aa17.02■□□□□ 0.31
GPC1-209ENST00000495100 COL17A1Q9UMD9 1497 aaPredicted RBP17.01■□□□□ 0.31
GPC1-209ENST00000495100 OSCARQ8IYS5 282 aa17.01■□□□□ 0.31
GPC1-209ENST00000495100 FAM83GA6ND36 823 aa17■□□□□ 0.31
GPC1-209ENST00000495100 RBM33Q96EV2 1170 aaKnown RBP17■□□□□ 0.31
GPC1-209ENST00000495100 SAMD9LQ8IVG5 1584 aa17■□□□□ 0.31
GPC1-209ENST00000495100 FAM69CQ0P6D2 419 aa17■□□□□ 0.31
GPC1-209ENST00000495100 TMEM57Q8N5G2 664 aa17■□□□□ 0.31
GPC1-209ENST00000495100 EMILIN1Q9Y6C2 1016 aa17■□□□□ 0.31
GPC1-209ENST00000495100 CDK19Q9BWU1 502 aa16.99■□□□□ 0.31
GPC1-209ENST00000495100 ADGRL1O94910 1474 aa16.99■□□□□ 0.31
GPC1-209ENST00000495100 FANCAO15360 1455 aa16.98■□□□□ 0.31
GPC1-209ENST00000495100 PLCH2O75038 1416 aa16.98■□□□□ 0.31
GPC1-209ENST00000495100 SCAF11Q99590 1463 aaKnown RBP16.98■□□□□ 0.31
GPC1-209ENST00000495100 TTC37Q6PGP7 1564 aa16.97■□□□□ 0.31
GPC1-209ENST00000495100 TMPOP42166 694 aaKnown RBP16.97■□□□□ 0.31
GPC1-209ENST00000495100 CDC42BPAQ5VT25 1732 aa16.97■□□□□ 0.31
GPC1-209ENST00000495100 TRIM27P14373 513 aa16.96■□□□□ 0.31
GPC1-209ENST00000495100 HSCBQ8IWL3 235 aa16.96■□□□□ 0.31
GPC1-209ENST00000495100 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.96■□□□□ 0.3
GPC1-209ENST00000495100 NME9Q86XW9 330 aa16.95■□□□□ 0.3
GPC1-209ENST00000495100 NKTRP30414 1462 aaKnown RBP16.95■□□□□ 0.3
GPC1-209ENST00000495100 KRT24Q2M2I5 525 aa16.95■□□□□ 0.3
GPC1-209ENST00000495100 C22orf23Q9BZE7 217 aa16.95■□□□□ 0.3
GPC1-209ENST00000495100 PDE3AQ14432 1141 aa16.94■□□□□ 0.3
GPC1-209ENST00000495100 KDM2BQ8NHM5 1336 aa16.94■□□□□ 0.3
GPC1-209ENST00000495100 MVPQ14764 893 aaKnown RBP16.93■□□□□ 0.3
GPC1-209ENST00000495100 GPRASP1Q5JY77 1395 aa16.93■□□□□ 0.3
GPC1-209ENST00000495100 SLC26A8Q96RN1 970 aa16.92■□□□□ 0.3
GPC1-209ENST00000495100 TAOK2Q9UL54 1235 aa16.92■□□□□ 0.3
GPC1-209ENST00000495100 ABCA8O94911 1581 aa16.91■□□□□ 0.3
GPC1-209ENST00000495100 IPO8O15397 1037 aaKnown RBP16.91■□□□□ 0.3
GPC1-209ENST00000495100 TSPYL6Q8N831 410 aa16.91■□□□□ 0.3
GPC1-209ENST00000495100 PHACTR3Q96KR7 559 aa16.91■□□□□ 0.3
GPC1-209ENST00000495100 C14orf93Q9H972 538 aaKnown RBP16.91■□□□□ 0.3
GPC1-209ENST00000495100 KDM5DQ9BY66 1539 aa16.91■□□□□ 0.3
GPC1-209ENST00000495100 FYB1O15117 783 aa16.91■□□□□ 0.3
GPC1-209ENST00000495100 SHANK2Q9UPX8 1470 aa16.9■□□□□ 0.3
GPC1-209ENST00000495100 ATF7IPQ6VMQ6 1270 aa16.9■□□□□ 0.3
GPC1-209ENST00000495100 USP35Q9P2H5 1018 aa16.9■□□□□ 0.3
GPC1-209ENST00000495100 ATAD2Q6PL18 1390 aa16.9■□□□□ 0.3
GPC1-209ENST00000495100 WDR7Q9Y4E6 1490 aa16.9■□□□□ 0.3
GPC1-209ENST00000495100 TBC1D2Q9BYX2 928 aa16.9■□□□□ 0.3
GPC1-209ENST00000495100 ADGBQ8N7X0 1667 aa16.89■□□□□ 0.29
GPC1-209ENST00000495100 MCM10Q7L590 875 aa16.89■□□□□ 0.29
GPC1-209ENST00000495100 ARID3AQ99856 593 aa16.89■□□□□ 0.29
GPC1-209ENST00000495100 ASXL1Q8IXJ9 1541 aa16.89■□□□□ 0.29
GPC1-209ENST00000495100 RBM42Q9BTD8 480 aaKnown RBP16.88■□□□□ 0.29
GPC1-209ENST00000495100 NAP1L5Q96NT1 182 aaPredicted RBP16.88■□□□□ 0.29
GPC1-209ENST00000495100 DDX19BQ9UMR2 479 aa16.88■□□□□ 0.29
GPC1-209ENST00000495100 SMARCA5O60264 1052 aaPredicted RBP16.87■□□□□ 0.29
GPC1-209ENST00000495100 SULT6B1Q6IMI4 303 aa16.87■□□□□ 0.29
GPC1-209ENST00000495100 DUOX2Q9NRD8 1548 aa16.87■□□□□ 0.29
GPC1-209ENST00000495100 TSHZ3Q63HK5 1081 aa16.86■□□□□ 0.29
GPC1-209ENST00000495100 COG3Q96JB2 828 aa16.86■□□□□ 0.29
GPC1-209ENST00000495100 DTNBO60941 627 aa16.86■□□□□ 0.29
GPC1-209ENST00000495100 CD109Q6YHK3 1445 aa16.86■□□□□ 0.29
GPC1-209ENST00000495100 CEBPAP49715 358 aaPredicted RBP16.86■□□□□ 0.29
GPC1-209ENST00000495100 BLMP54132 1417 aaPredicted RBP16.85■□□□□ 0.29
GPC1-209ENST00000495100 ZNF521Q96K83 1311 aa16.85■□□□□ 0.29
GPC1-209ENST00000495100 AEBP1Q8IUX7 1158 aa16.84■□□□□ 0.29
GPC1-209ENST00000495100 ASXL2Q76L83 1435 aa16.84■□□□□ 0.29
GPC1-209ENST00000495100 ATP10AO60312 1499 aa16.84■□□□□ 0.29
GPC1-209ENST00000495100 PRKCSHP14314 528 aaPredicted RBP16.84■□□□□ 0.29
GPC1-209ENST00000495100 NGDNQ8NEJ9 315 aaKnown RBP16.84■□□□□ 0.29
GPC1-209ENST00000495100 WDR63Q8IWG1 891 aa16.83■□□□□ 0.28
GPC1-209ENST00000495100 TWISTNBQ3B726 338 aaPredicted RBP16.83■□□□□ 0.28
GPC1-209ENST00000495100 C16orf71Q8IYS4 520 aaPredicted RBP16.82■□□□□ 0.28
GPC1-209ENST00000495100 F6X3S4 739 aa16.82■□□□□ 0.28
GPC1-209ENST00000495100 EIF2S2P20042 333 aaKnown RBP16.81■□□□□ 0.28
GPC1-209ENST00000495100 ZMYM4Q5VZL5 1548 aa16.81■□□□□ 0.28
GPC1-209ENST00000495100 TRIM6-TRIM34B2RNG4 842 aa16.81■□□□□ 0.28
GPC1-209ENST00000495100 RTF1Q92541 710 aaKnown RBP16.81■□□□□ 0.28
GPC1-209ENST00000495100 PANK2Q9BZ23 570 aa16.8■□□□□ 0.28
GPC1-209ENST00000495100 GOLGA6L3A6NEY3 463 aa16.8■□□□□ 0.28
GPC1-209ENST00000495100 AMPHP49418 695 aa16.8■□□□□ 0.28
GPC1-209ENST00000495100 MPNDQ8N594 471 aa16.8■□□□□ 0.28
GPC1-209ENST00000495100 RILPL2Q969X0 211 aa16.8■□□□□ 0.28
GPC1-209ENST00000495100 CCDC9Q9Y3X0 531 aaKnown RBP16.79■□□□□ 0.28
GPC1-209ENST00000495100 CDC42BPBQ9Y5S2 1711 aa16.79■□□□□ 0.28
GPC1-209ENST00000495100 PLCB2Q00722 1185 aa16.79■□□□□ 0.28
GPC1-209ENST00000495100 TRIM44Q96DX7 344 aaPredicted RBP16.79■□□□□ 0.28
GPC1-209ENST00000495100 TRIM35Q9UPQ4 493 aa16.79■□□□□ 0.28
GPC1-209ENST00000495100 A0A1W2PP64 1363 aa16.79■□□□□ 0.28
GPC1-209ENST00000495100 ABCC2Q92887 1545 aa16.78■□□□□ 0.28
GPC1-209ENST00000495100 C8orf58Q8NAV2 365 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms