RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 CHIC2Q9UKJ5 165 aa18.35■□□□□ 0.53
UPF3A-210ENST00000493727 IDI1Q13907 227 aa18.34■□□□□ 0.53
UPF3A-210ENST00000493727 KCNA6P17658 529 aa18.33■□□□□ 0.52
UPF3A-210ENST00000493727 PSEN1P49768 467 aa18.33■□□□□ 0.52
UPF3A-210ENST00000493727 TIE1P35590 1138 aa18.32■□□□□ 0.52
UPF3A-210ENST00000493727 MYO5BQ9ULV0 1848 aa18.31■□□□□ 0.52
UPF3A-210ENST00000493727 FAM50AQ14320 339 aaKnown RBP18.31■□□□□ 0.52
UPF3A-210ENST00000493727 POTEAQ6S8J7 498 aa18.3■□□□□ 0.52
UPF3A-210ENST00000493727 BMP2KQ9NSY1 1161 aaPredicted RBP18.3■□□□□ 0.52
UPF3A-210ENST00000493727 TAOK2Q9UL54 1235 aa18.3■□□□□ 0.52
UPF3A-210ENST00000493727 RRBP1Q9P2E9 1410 aaKnown RBP18.3■□□□□ 0.52
UPF3A-210ENST00000493727 CHD2O14647 1828 aaKnown RBP18.29■□□□□ 0.52
UPF3A-210ENST00000493727 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.29■□□□□ 0.52
UPF3A-210ENST00000493727 ZFP91Q96JP5 570 aaPredicted RBP18.29■□□□□ 0.52
UPF3A-210ENST00000493727 SLC26A8Q96RN1 970 aa18.29■□□□□ 0.52
UPF3A-210ENST00000493727 ZFYVE9O95405 1425 aa18.28■□□□□ 0.52
UPF3A-210ENST00000493727 ANKRD50Q9ULJ7 1429 aa18.28■□□□□ 0.52
UPF3A-210ENST00000493727 RPRD2Q5VT52 1461 aaKnown RBP18.27■□□□□ 0.52
UPF3A-210ENST00000493727 PHLPP1O60346 1717 aa18.27■□□□□ 0.52
UPF3A-210ENST00000493727 TRIM26Q12899 539 aaPredicted RBP18.27■□□□□ 0.52
UPF3A-210ENST00000493727 SETD1AO15047 1707 aaKnown RBP18.26■□□□□ 0.51
UPF3A-210ENST00000493727 GCC2Q8IWJ2 1684 aa18.26■□□□□ 0.51
UPF3A-210ENST00000493727 TTLL13PA6NNM8 815 aa18.26■□□□□ 0.51
UPF3A-210ENST00000493727 RBM33Q96EV2 1170 aaKnown RBP18.26■□□□□ 0.51
UPF3A-210ENST00000493727 TMEM106CQ9BVX2 250 aa18.26■□□□□ 0.51
UPF3A-210ENST00000493727 COL16A1Q07092 1604 aaPredicted RBP18.25■□□□□ 0.51
UPF3A-210ENST00000493727 POTEIP0CG38 1075 aa18.25■□□□□ 0.51
UPF3A-210ENST00000493727 PROSER2Q86WR7 435 aaPredicted RBP18.25■□□□□ 0.51
UPF3A-210ENST00000493727 ASTLQ6HA08 431 aaPredicted RBP18.24■□□□□ 0.51
UPF3A-210ENST00000493727 SLC52A1Q9NWF4 448 aa18.24■□□□□ 0.51
UPF3A-210ENST00000493727 MSH6P52701 1360 aa18.24■□□□□ 0.51
UPF3A-210ENST00000493727 TMEM131LA2VDJ0 1609 aa18.23■□□□□ 0.51
UPF3A-210ENST00000493727 PLEKHG1Q9ULL1 1385 aa18.23■□□□□ 0.51
UPF3A-210ENST00000493727 ATMINO43313 823 aaPredicted RBP18.23■□□□□ 0.51
UPF3A-210ENST00000493727 DCBLD2Q96PD2 775 aa18.23■□□□□ 0.51
UPF3A-210ENST00000493727 UNC13BO14795 1591 aa18.21■□□□□ 0.51
UPF3A-210ENST00000493727 ROCK1Q13464 1354 aa18.2■□□□□ 0.5
UPF3A-210ENST00000493727 JCADQ9P266 1359 aa18.2■□□□□ 0.5
UPF3A-210ENST00000493727 ITGAEP38570 1179 aa18.19■□□□□ 0.5
UPF3A-210ENST00000493727 ATN1P54259 1190 aaPredicted RBP18.19■□□□□ 0.5
UPF3A-210ENST00000493727 RIMS2Q9UQ26 1411 aa18.19■□□□□ 0.5
UPF3A-210ENST00000493727 NCOA3Q9Y6Q9 1424 aa18.18■□□□□ 0.5
UPF3A-210ENST00000493727 SLAIN2Q9P270 581 aa18.18■□□□□ 0.5
UPF3A-210ENST00000493727 LRP6O75581 1613 aa18.17■□□□□ 0.5
UPF3A-210ENST00000493727 STK25O00506 426 aa18.17■□□□□ 0.5
UPF3A-210ENST00000493727 HS6ST3Q8IZP7 471 aa18.17■□□□□ 0.5
UPF3A-210ENST00000493727 BCL11BQ9C0K0 894 aaPredicted RBP18.17■□□□□ 0.5
UPF3A-210ENST00000493727 DIP2AQ14689 1571 aa18.17■□□□□ 0.5
UPF3A-210ENST00000493727 AHDC1Q5TGY3 1603 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-210ENST00000493727 ADAMTS13Q76LX8 1427 aa18.16■□□□□ 0.5
UPF3A-210ENST00000493727 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-210ENST00000493727 CHGAP10645 457 aaKnown RBP18.16■□□□□ 0.5
UPF3A-210ENST00000493727 E9PCH4 1651 aa18.15■□□□□ 0.5
UPF3A-210ENST00000493727 SHPRHQ149N8 1683 aa18.15■□□□□ 0.5
UPF3A-210ENST00000493727 HDGFP51858 240 aaKnown RBP18.15■□□□□ 0.5
UPF3A-210ENST00000493727 IQGAP3Q86VI3 1631 aa18.14■□□□□ 0.49
UPF3A-210ENST00000493727 PCGF6Q9BYE7 350 aa18.14■□□□□ 0.49
UPF3A-210ENST00000493727 PELP1Q8IZL8 1130 aaKnown RBP18.13■□□□□ 0.49
UPF3A-210ENST00000493727 TBX22Q9Y458 520 aa18.13■□□□□ 0.49
UPF3A-210ENST00000493727 STK24Q9Y6E0 443 aa18.13■□□□□ 0.49
UPF3A-210ENST00000493727 BCANQ96GW7 911 aa18.12■□□□□ 0.49
UPF3A-210ENST00000493727 TRIM35Q9UPQ4 493 aa18.12■□□□□ 0.49
UPF3A-210ENST00000493727 PIK3R4Q99570 1358 aa18.11■□□□□ 0.49
UPF3A-210ENST00000493727 SPATA31A6Q5VVP1 1343 aa18.1■□□□□ 0.49
UPF3A-210ENST00000493727 PPP1R15AO75807 674 aaPredicted RBP18.1■□□□□ 0.49
UPF3A-210ENST00000493727 CABP2Q9NPB3 220 aa18.09■□□□□ 0.49
UPF3A-210ENST00000493727 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.08■□□□□ 0.48
UPF3A-210ENST00000493727 NRXN3Q9Y4C0 1643 aa18.08■□□□□ 0.48
UPF3A-210ENST00000493727 TRPM2O94759 1503 aa18.08■□□□□ 0.48
UPF3A-210ENST00000493727 XRN1Q8IZH2 1706 aaKnown RBP18.07■□□□□ 0.48
UPF3A-210ENST00000493727 PTPRUQ92729 1446 aa18.06■□□□□ 0.48
UPF3A-210ENST00000493727 NUP155O75694 1391 aa18.06■□□□□ 0.48
UPF3A-210ENST00000493727 CADPS2Q86UW7 1296 aa18.05■□□□□ 0.48
UPF3A-210ENST00000493727 C19orf44Q9H6X5 657 aa18.05■□□□□ 0.48
UPF3A-210ENST00000493727 DCCP43146 1447 aa18.05■□□□□ 0.48
UPF3A-210ENST00000493727 NHSL1Q5SYE7 1610 aa18.04■□□□□ 0.48
UPF3A-210ENST00000493727 SETBP1Q9Y6X0 1596 aa18.03■□□□□ 0.48
UPF3A-210ENST00000493727 SPHKAPQ2M3C7 1700 aa18.02■□□□□ 0.48
UPF3A-210ENST00000493727 NUTM2DQ5VT03 806 aaPredicted RBP18.02■□□□□ 0.48
UPF3A-210ENST00000493727 ZNF772Q68DY9 489 aaPredicted RBP18.02■□□□□ 0.48
UPF3A-210ENST00000493727 ASXL1Q8IXJ9 1541 aa18.02■□□□□ 0.47
UPF3A-210ENST00000493727 BRINP3Q76B58 766 aa18.01■□□□□ 0.47
UPF3A-210ENST00000493727 C14orf37Q86TY3 774 aa18.01■□□□□ 0.47
UPF3A-210ENST00000493727 EFCAB3Q8N7B9 438 aa18.01■□□□□ 0.47
UPF3A-210ENST00000493727 UPF1Q92900 1129 aaKnown RBP eCLIP18.01■□□□□ 0.47
UPF3A-210ENST00000493727 CDK12Q9NYV4 1490 aaPredicted RBP18.01■□□□□ 0.47
UPF3A-210ENST00000493727 ATF3P18847 181 aa18■□□□□ 0.47
UPF3A-210ENST00000493727 MST1RQ04912 1400 aa17.99■□□□□ 0.47
UPF3A-210ENST00000493727 SETD5Q9C0A6 1442 aa17.99■□□□□ 0.47
UPF3A-210ENST00000493727 MEX3CQ5U5Q3 659 aaKnown RBP17.99■□□□□ 0.47
UPF3A-210ENST00000493727 SRCAPQ6ZRS2 3230 aa17.98■□□□□ 0.47
UPF3A-210ENST00000493727 GOLGA2Q08379 1002 aa17.98■□□□□ 0.47
UPF3A-210ENST00000493727 AMOTL2Q9Y2J4 779 aa17.98■□□□□ 0.47
UPF3A-210ENST00000493727 IER5LQ5T953 404 aa17.97■□□□□ 0.47
UPF3A-210ENST00000493727 MKRN3Q13064 507 aaKnown RBP17.96■□□□□ 0.47
UPF3A-210ENST00000493727 SLC39A7Q92504 469 aa17.96■□□□□ 0.47
UPF3A-210ENST00000493727 TRIM52Q96A61 297 aa17.96■□□□□ 0.47
UPF3A-210ENST00000493727 NALCNQ8IZF0 1738 aa17.95■□□□□ 0.46
UPF3A-210ENST00000493727 NKX1-1Q15270 411 aaPredicted RBP17.94■□□□□ 0.46
UPF3A-210ENST00000493727 HFM1A2PYH4 1435 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms