RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 AEBP2Q6ZN18 517 aaPredicted RBP37.02■■■■□ 3.52
UPF3A-210ENST00000493727 CHIC1Q5VXU3 224 aa36.1■■■■□ 3.37
UPF3A-210ENST00000493727 PHF23Q9BUL5 403 aaPredicted RBP31.78■■■□□ 2.68
UPF3A-210ENST00000493727 SENP3Q9H4L4 574 aaPredicted RBP31.34■■■□□ 2.61
UPF3A-210ENST00000493727 NISCHQ9Y2I1 1504 aa29.8■■■□□ 2.36
UPF3A-210ENST00000493727 PLPPR3Q6T4P5 718 aa29.27■■■□□ 2.28
UPF3A-210ENST00000493727 FOXD1Q16676 465 aa29.14■■■□□ 2.26
UPF3A-210ENST00000493727 PPP6R1Q9UPN7 881 aa28.05■■■□□ 2.08
UPF3A-210ENST00000493727 ADRA2BP18089 450 aa27.98■■■□□ 2.07
UPF3A-210ENST00000493727 PIAS4Q8N2W9 510 aaPredicted RBP27.41■■□□□ 1.98
UPF3A-210ENST00000493727 ABCC9O60706 1549 aa27.08■■□□□ 1.93
UPF3A-210ENST00000493727 CCDC180Q9P1Z9 1646 aa26.92■■□□□ 1.9
UPF3A-210ENST00000493727 MSH5O43196 834 aa26.83■■□□□ 1.89
UPF3A-210ENST00000493727 PPP4R3CPQ6ZMV5 832 aa25.8■■□□□ 1.72
UPF3A-210ENST00000493727 RB1CC1Q8TDY2 1594 aa25.69■■□□□ 1.7
UPF3A-210ENST00000493727 DNAJC5BQ9UF47 199 aa25.65■■□□□ 1.7
UPF3A-210ENST00000493727 SCAF1Q9H7N4 1312 aaKnown RBP25.54■■□□□ 1.68
UPF3A-210ENST00000493727 NACADO15069 1562 aa25.47■■□□□ 1.67
UPF3A-210ENST00000493727 MAPK8IP2Q13387 824 aaPredicted RBP25.41■■□□□ 1.66
UPF3A-210ENST00000493727 UNC13AQ9UPW8 1703 aa25.2■■□□□ 1.63
UPF3A-210ENST00000493727 KCNA4P22459 653 aa25.19■■□□□ 1.62
UPF3A-210ENST00000493727 PABPN1Q86U42 306 aaKnown RBP eCLIP25.1■■□□□ 1.61
UPF3A-210ENST00000493727 MYO15BQ96JP2 1530 aa25.07■■□□□ 1.6
UPF3A-210ENST00000493727 CNKSR2Q8WXI2 1034 aa25.07■■□□□ 1.6
UPF3A-210ENST00000493727 NCBP3Q53F19 620 aaKnown RBP25.06■■□□□ 1.6
UPF3A-210ENST00000493727 DMRT2Q9Y5R5 561 aa25.05■■□□□ 1.6
UPF3A-210ENST00000493727 DCAF8L2P0C7V8 631 aa25.04■■□□□ 1.6
UPF3A-210ENST00000493727 BICRAQ9NZM4 1560 aa25.02■■□□□ 1.6
UPF3A-210ENST00000493727 NPM3O75607 178 aaKnown RBP24.77■■□□□ 1.56
UPF3A-210ENST00000493727 ZCCHC6Q5VYS8 1495 aaKnown RBP24.68■■□□□ 1.54
UPF3A-210ENST00000493727 SHROOM4Q9ULL8 1493 aa24.65■■□□□ 1.54
UPF3A-210ENST00000493727 DCAF1Q9Y4B6 1507 aa24.64■■□□□ 1.53
UPF3A-210ENST00000493727 RNF216Q9NWF9 866 aaPredicted RBP24.61■■□□□ 1.53
UPF3A-210ENST00000493727 HOXD11P31277 338 aaPredicted RBP24.54■■□□□ 1.52
UPF3A-210ENST00000493727 POTEDQ86YR6 584 aa24.51■■□□□ 1.51
UPF3A-210ENST00000493727 CC2D2AQ9P2K1 1620 aa24.5■■□□□ 1.51
UPF3A-210ENST00000493727 SCRIBQ14160 1630 aa24.44■■□□□ 1.5
UPF3A-210ENST00000493727 CECR2Q9BXF3 1484 aa24.44■■□□□ 1.5
UPF3A-210ENST00000493727 EIF4G1Q04637 1599 aaKnown RBP24.4■■□□□ 1.5
UPF3A-210ENST00000493727 SLC4A1APQ9BWU0 796 aaKnown RBP23.94■■□□□ 1.42
UPF3A-210ENST00000493727 DCAF8L1A6NGE4 600 aa23.86■■□□□ 1.41
UPF3A-210ENST00000493727 DNAJC5Q9H3Z4 198 aa23.74■■□□□ 1.39
UPF3A-210ENST00000493727 NCAPD3P42695 1498 aa23.51■■□□□ 1.35
UPF3A-210ENST00000493727 CUX2O14529 1486 aa23.5■■□□□ 1.35
UPF3A-210ENST00000493727 SLC4A2P04920 1241 aa23.43■■□□□ 1.34
UPF3A-210ENST00000493727 ATAD2BQ9ULI0 1458 aa23.39■■□□□ 1.34
UPF3A-210ENST00000493727 ERCC6Q03468 1493 aa23.37■■□□□ 1.33
UPF3A-210ENST00000493727 HMGXB3Q12766 1538 aa23.35■■□□□ 1.33
UPF3A-210ENST00000493727 SMARCA4P51532 1647 aa23.33■■□□□ 1.32
UPF3A-210ENST00000493727 SMARCA2P51531 1590 aa23.31■■□□□ 1.32
UPF3A-210ENST00000493727 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.29■■□□□ 1.328e-9■□□□□ 9.1
UPF3A-210ENST00000493727 ZBTB22O15209 634 aa23.21■■□□□ 1.31
UPF3A-210ENST00000493727 NESP48681 1621 aa23.21■■□□□ 1.31
UPF3A-210ENST00000493727 EHMT2Q96KQ7 1210 aa23.2■■□□□ 1.3
UPF3A-210ENST00000493727 FOXD4L1Q9NU39 408 aa23.16■■□□□ 1.3
UPF3A-210ENST00000493727 PEG3Q9GZU2 1588 aa23.14■■□□□ 1.3
UPF3A-210ENST00000493727 BAZ1AQ9NRL2 1556 aaPredicted RBP23.14■■□□□ 1.3
UPF3A-210ENST00000493727 BAZ1BQ9UIG0 1483 aaKnown RBP23.12■■□□□ 1.29
UPF3A-210ENST00000493727 THOC2Q8NI27 1593 aaKnown RBP23.11■■□□□ 1.29
UPF3A-210ENST00000493727 CSRNP3Q8WYN3 585 aa23.05■■□□□ 1.28
UPF3A-210ENST00000493727 LAMC3Q9Y6N6 1575 aa23.03■■□□□ 1.28
UPF3A-210ENST00000493727 RNF39Q9H2S5 420 aa23.02■■□□□ 1.28
UPF3A-210ENST00000493727 U3KPZ7 1027 aaPredicted RBP23■■□□□ 1.27
UPF3A-210ENST00000493727 KIF21AQ7Z4S6 1674 aa22.96■■□□□ 1.27
UPF3A-210ENST00000493727 MROH2BQ7Z745 1585 aa22.95■■□□□ 1.26
UPF3A-210ENST00000493727 PDS5BQ9NTI5 1447 aa22.84■■□□□ 1.25
UPF3A-210ENST00000493727 MYCNP04198 464 aaPredicted RBP22.84■■□□□ 1.25
UPF3A-210ENST00000493727 CADPSQ9ULU8 1353 aa22.74■■□□□ 1.23
UPF3A-210ENST00000493727 C1QBPQ07021 282 aaKnown RBP22.72■■□□□ 1.23
UPF3A-210ENST00000493727 MRC2Q9UBG0 1479 aa22.71■■□□□ 1.23
UPF3A-210ENST00000493727 WDR62O43379 1518 aa22.71■■□□□ 1.23
UPF3A-210ENST00000493727 WIZO95785 1651 aa22.66■■□□□ 1.22
UPF3A-210ENST00000493727 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.62■■□□□ 1.21
UPF3A-210ENST00000493727 HNRNPUL2Q1KMD3 747 aaKnown RBP22.62■■□□□ 1.21
UPF3A-210ENST00000493727 SAMD1Q6SPF0 538 aaPredicted RBP22.55■■□□□ 1.2
UPF3A-210ENST00000493727 CEP164Q9UPV0 1460 aa22.54■■□□□ 1.2
UPF3A-210ENST00000493727 FANCD2Q9BXW9 1451 aa22.49■■□□□ 1.19
UPF3A-210ENST00000493727 TRIM41Q8WV44 630 aa22.49■■□□□ 1.19
UPF3A-210ENST00000493727 CFTRP13569 1480 aa22.47■■□□□ 1.19
UPF3A-210ENST00000493727 CACNB1Q02641 598 aaPredicted RBP22.38■■□□□ 1.17
UPF3A-210ENST00000493727 TOP2AP11388 1531 aaKnown RBP22.37■■□□□ 1.17
UPF3A-210ENST00000493727 ATXN8OSP0DMR3 200 aa22.37■■□□□ 1.17
UPF3A-210ENST00000493727 APLP2Q06481 763 aa22.36■■□□□ 1.17
UPF3A-210ENST00000493727 RSF1Q96T23 1441 aaPredicted RBP22.36■■□□□ 1.17
UPF3A-210ENST00000493727 URB2Q14146 1524 aaKnown RBP22.36■■□□□ 1.17
UPF3A-210ENST00000493727 SPINK5Q9NQ38 1064 aaPredicted RBP22.35■■□□□ 1.17
UPF3A-210ENST00000493727 ATF5Q9Y2D1 282 aaPredicted RBP22.3■■□□□ 1.16
UPF3A-210ENST00000493727 PRDM2Q13029 1718 aa22.29■■□□□ 1.16
UPF3A-210ENST00000493727 OSCARQ8IYS5 282 aa22.26■■□□□ 1.15
UPF3A-210ENST00000493727 CAPN15O75808 1086 aa22.2■■□□□ 1.14
UPF3A-210ENST00000493727 RIMBP3CA6NJZ7 1639 aa22.13■■□□□ 1.13
UPF3A-210ENST00000493727 RIMBP3BA6NNM3 1639 aa22.13■■□□□ 1.13
UPF3A-210ENST00000493727 RIMBP3Q9UFD9 1639 aa22.13■■□□□ 1.13
UPF3A-210ENST00000493727 ZNF608Q9ULD9 1512 aaPredicted RBP22.11■■□□□ 1.13
UPF3A-210ENST00000493727 IFT140Q96RY7 1462 aa22.11■■□□□ 1.13
UPF3A-210ENST00000493727 ZNF219Q9P2Y4 722 aaPredicted RBP22.1■■□□□ 1.13
UPF3A-210ENST00000493727 TRHP20396 242 aaPredicted RBP22.09■■□□□ 1.13
UPF3A-210ENST00000493727 CCDC88BA6NC98 1476 aa22.08■■□□□ 1.12
UPF3A-210ENST00000493727 TOPBP1Q92547 1522 aa22.06■■□□□ 1.12
UPF3A-210ENST00000493727 ARHGEF11O15085 1522 aa22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms