RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 MINK1Q8N4C8 1332 aaPredicted RBP29.8■■■□□ 2.36
SMC4-221ENST00000489573 ROBO2Q9HCK4 1378 aa29.78■■■□□ 2.36
SMC4-221ENST00000489573 PTCH1Q13635 1447 aa29.76■■■□□ 2.35
SMC4-221ENST00000489573 XRN1Q8IZH2 1706 aaKnown RBP29.76■■■□□ 2.35
SMC4-221ENST00000489573 AMOTL2Q9Y2J4 779 aa29.76■■■□□ 2.35
SMC4-221ENST00000489573 LMTK3Q96Q04 1460 aa29.75■■■□□ 2.35
SMC4-221ENST00000489573 PANK3Q9H999 370 aa29.75■■■□□ 2.35
SMC4-221ENST00000489573 NCKAP5LQ9HCH0 1330 aa29.75■■■□□ 2.35
SMC4-221ENST00000489573 SRPK2P78362 688 aaKnown RBP29.7■■■□□ 2.35
SMC4-221ENST00000489573 HSPA2P54652 639 aa29.69■■■□□ 2.34
SMC4-221ENST00000489573 PRKRIP1Q9H875 184 aaPredicted RBP29.69■■■□□ 2.34
SMC4-221ENST00000489573 CABP2Q9NPB3 220 aa29.69■■■□□ 2.34
SMC4-221ENST00000489573 ATAD2Q6PL18 1390 aa29.69■■■□□ 2.34
SMC4-221ENST00000489573 PER1O15534 1290 aaPredicted RBP29.69■■■□□ 2.34
SMC4-221ENST00000489573 CCER2I3L3R5 266 aa29.67■■■□□ 2.34
SMC4-221ENST00000489573 CDK19Q9BWU1 502 aa29.67■■■□□ 2.34
SMC4-221ENST00000489573 ADGRB2O60241 1585 aa29.67■■■□□ 2.34
SMC4-221ENST00000489573 CHD2O14647 1828 aaKnown RBP29.66■■■□□ 2.34
SMC4-221ENST00000489573 NINLQ9Y2I6 1382 aa29.65■■■□□ 2.34
SMC4-221ENST00000489573 TMC1Q8TDI8 760 aa29.64■■■□□ 2.34
SMC4-221ENST00000489573 KCNA6P17658 529 aa29.64■■■□□ 2.33
SMC4-221ENST00000489573 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.64■■■□□ 2.33
SMC4-221ENST00000489573 WASLO00401 505 aaPredicted RBP29.63■■■□□ 2.33
SMC4-221ENST00000489573 ILDR1Q86SU0 546 aaPredicted RBP29.61■■■□□ 2.33
SMC4-221ENST00000489573 SLC12A5Q9H2X9 1139 aa29.61■■■□□ 2.33
SMC4-221ENST00000489573 KNSTRNQ9Y448 316 aa29.6■■■□□ 2.33
SMC4-221ENST00000489573 KTN1Q86UP2 1357 aaKnown RBP29.6■■■□□ 2.33
SMC4-221ENST00000489573 NWD1Q149M9 1564 aa29.59■■■□□ 2.33
SMC4-221ENST00000489573 ANKRD36BQ8N2N9 1353 aa29.57■■■□□ 2.32
SMC4-221ENST00000489573 CNGB1Q14028 1251 aaPredicted RBP29.56■■■□□ 2.32
SMC4-221ENST00000489573 RALBP1Q15311 655 aa29.55■■■□□ 2.32
SMC4-221ENST00000489573 CARD14Q9BXL6 1004 aa29.53■■■□□ 2.32
SMC4-221ENST00000489573 PARD3Q8TEW0 1356 aa29.53■■■□□ 2.32
SMC4-221ENST00000489573 NPC1L1Q9UHC9 1359 aa29.52■■■□□ 2.32
SMC4-221ENST00000489573 AMER1Q5JTC6 1135 aaPredicted RBP29.52■■■□□ 2.32
SMC4-221ENST00000489573 NSD3Q9BZ95 1437 aa29.51■■■□□ 2.31
SMC4-221ENST00000489573 ATP7BP35670 1465 aa29.5■■■□□ 2.31
SMC4-221ENST00000489573 CC2D1BQ5T0F9 858 aaKnown RBP29.5■■■□□ 2.31
SMC4-221ENST00000489573 STRCQ7RTU9 1775 aa29.5■■■□□ 2.31
SMC4-221ENST00000489573 NUDT16Q96DE0 195 aaKnown RBP29.49■■■□□ 2.31
SMC4-221ENST00000489573 A0A1W2PP64 1363 aa29.49■■■□□ 2.31
SMC4-221ENST00000489573 TERF2IPQ9NYB0 399 aa29.48■■■□□ 2.31
SMC4-221ENST00000489573 NKTRP30414 1462 aaKnown RBP29.48■■■□□ 2.31
SMC4-221ENST00000489573 CD163L1Q9NR16 1453 aa29.48■■■□□ 2.31
SMC4-221ENST00000489573 USP32Q8NFA0 1604 aa29.48■■■□□ 2.31
SMC4-221ENST00000489573 CABP1Q9NZU7 370 aa29.47■■■□□ 2.31
SMC4-221ENST00000489573 PPIP5K1Q6PFW1 1433 aa29.47■■■□□ 2.31
SMC4-221ENST00000489573 MYBBP1AQ9BQG0 1328 aaKnown RBP29.46■■■□□ 2.31
SMC4-221ENST00000489573 PRR36Q9H6K5 1346 aa29.45■■■□□ 2.31
SMC4-221ENST00000489573 CCDC61Q9Y6R9 512 aa29.45■■■□□ 2.31
SMC4-221ENST00000489573 NALCNQ8IZF0 1738 aa29.44■■■□□ 2.3
SMC4-221ENST00000489573 HDGFL2Q7Z4V5 671 aaPredicted RBP29.44■■■□□ 2.3
SMC4-221ENST00000489573 TOPAZ1Q8N9V7 1692 aa29.43■■■□□ 2.3
SMC4-221ENST00000489573 ADGRL3Q9HAR2 1447 aa29.43■■■□□ 2.3
SMC4-221ENST00000489573 CDC42BPGQ6DT37 1551 aa29.42■■■□□ 2.3
SMC4-221ENST00000489573 CGNL1Q0VF96 1302 aa29.4■■■□□ 2.3
SMC4-221ENST00000489573 CCDC184Q52MB2 194 aa29.39■■■□□ 2.3
SMC4-221ENST00000489573 MRS2Q9HD23 443 aa29.39■■■□□ 2.3
SMC4-221ENST00000489573 FMN2Q9NZ56 1722 aa29.39■■■□□ 2.3
SMC4-221ENST00000489573 ANKARQ7Z5J8 1434 aa29.39■■■□□ 2.29
SMC4-221ENST00000489573 CPSF1Q10570 1443 aaKnown RBP29.38■■■□□ 2.29
SMC4-221ENST00000489573 PROSER2Q86WR7 435 aaPredicted RBP29.37■■■□□ 2.29
SMC4-221ENST00000489573 YTHDC1Q96MU7 727 aaKnown RBP29.37■■■□□ 2.29
SMC4-221ENST00000489573 NSD2O96028 1365 aa29.37■■■□□ 2.29
SMC4-221ENST00000489573 RBM33Q96EV2 1170 aaKnown RBP29.36■■■□□ 2.29
SMC4-221ENST00000489573 ITSN1Q15811 1721 aa29.36■■■□□ 2.29
SMC4-221ENST00000489573 BRD4O60885 1362 aaPredicted RBP29.36■■■□□ 2.29
SMC4-221ENST00000489573 STRCP1A6NGW2 1772 aa29.35■■■□□ 2.29
SMC4-221ENST00000489573 NUTM2FA1L443 756 aa29.35■■■□□ 2.29
SMC4-221ENST00000489573 NLRP13Q86W25 1043 aa29.35■■■□□ 2.29
SMC4-221ENST00000489573 PLEKHG3A1L390 1219 aa29.33■■■□□ 2.29
SMC4-221ENST00000489573 C14orf37Q86TY3 774 aa29.33■■■□□ 2.29
SMC4-221ENST00000489573 AKAP12Q02952 1782 aa29.32■■■□□ 2.28
SMC4-221ENST00000489573 MON2Q7Z3U7 1717 aa29.31■■■□□ 2.28
SMC4-221ENST00000489573 EDC4Q6P2E9 1401 aaKnown RBP29.31■■■□□ 2.28
SMC4-221ENST00000489573 NCOA3Q9Y6Q9 1424 aa29.29■■■□□ 2.28
SMC4-221ENST00000489573 ZNF692Q9BU19 519 aaPredicted RBP29.29■■■□□ 2.28
SMC4-221ENST00000489573 PPP2R1AP30153 589 aa29.28■■■□□ 2.28
SMC4-221ENST00000489573 TMEM94Q12767 1356 aa29.28■■■□□ 2.28
SMC4-221ENST00000489573 MORC1Q86VD1 984 aa29.27■■■□□ 2.28
SMC4-221ENST00000489573 DMRT2Q9Y5R5 561 aa29.26■■■□□ 2.28
SMC4-221ENST00000489573 RGPD8O14715 1765 aaPredicted RBP29.26■■■□□ 2.27
SMC4-221ENST00000489573 ACEP12821 1306 aa29.26■■■□□ 2.27
SMC4-221ENST00000489573 KIF20BQ96Q89 1820 aa29.25■■■□□ 2.27
SMC4-221ENST00000489573 FBXO41Q8TF61 875 aa29.24■■■□□ 2.27
SMC4-221ENST00000489573 POLR3AO14802 1390 aaPredicted RBP29.24■■■□□ 2.27
SMC4-221ENST00000489573 ANKRD26Q9UPS8 1709 aa29.24■■■□□ 2.27
SMC4-221ENST00000489573 FYB1O15117 783 aa29.23■■■□□ 2.27
SMC4-221ENST00000489573 C19orf44Q9H6X5 657 aa29.22■■■□□ 2.27
SMC4-221ENST00000489573 NRKQ7Z2Y5 1582 aa29.21■■■□□ 2.27
SMC4-221ENST00000489573 USP6P35125 1406 aa29.21■■■□□ 2.27
SMC4-221ENST00000489573 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.21■■■□□ 2.276e-65■■■■■ 143.5
SMC4-221ENST00000489573 PMFBP1Q8TBY8 1022 aa29.21■■■□□ 2.27
SMC4-221ENST00000489573 GGNBP2Q9H3C7 697 aa29.21■■■□□ 2.27
SMC4-221ENST00000489573 DCCP43146 1447 aa29.2■■■□□ 2.27
SMC4-221ENST00000489573 ZNF335Q9H4Z2 1342 aaPredicted RBP29.2■■■□□ 2.27
SMC4-221ENST00000489573 FAM9BQ8IZU0 186 aa29.19■■■□□ 2.26
SMC4-221ENST00000489573 NGDNQ8NEJ9 315 aaKnown RBP29.18■■■□□ 2.26
SMC4-221ENST00000489573 PNISRQ8TF01 805 aaKnown RBP29.18■■■□□ 2.26
SMC4-221ENST00000489573 LRRC7Q96NW7 1537 aa29.16■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms