RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 CARMIL1Q5VZK9 1371 aa11.28□□□□□ -0.6
TMEM39A-209ENST00000486235 CARMIL2Q6F5E8 1435 aa11.27□□□□□ -0.6
TMEM39A-209ENST00000486235 PTGDRQ13258 359 aa11.27□□□□□ -0.61
TMEM39A-209ENST00000486235 TRAF7Q6Q0C0 670 aa11.26□□□□□ -0.61
TMEM39A-209ENST00000486235 V9GY48 417 aaPredicted RBP11.26□□□□□ -0.61
TMEM39A-209ENST00000486235 PLB1Q6P1J6 1458 aa11.25□□□□□ -0.61
TMEM39A-209ENST00000486235 ZPR1O75312 459 aa11.25□□□□□ -0.61
TMEM39A-209ENST00000486235 PCDHB3Q9Y5E6 796 aa11.25□□□□□ -0.61
TMEM39A-209ENST00000486235 ADGRL1O94910 1474 aa11.25□□□□□ -0.61
TMEM39A-209ENST00000486235 BLOC1S3Q6QNY0 202 aa11.24□□□□□ -0.61
TMEM39A-209ENST00000486235 PPRC1Q5VV67 1664 aaKnown RBP11.24□□□□□ -0.61
TMEM39A-209ENST00000486235 DNAJB2P25686 324 aa11.23□□□□□ -0.61
TMEM39A-209ENST00000486235 GGCXP38435 758 aa11.23□□□□□ -0.61
TMEM39A-209ENST00000486235 RBM46Q8TBY0 533 aaKnown RBP11.23□□□□□ -0.61
TMEM39A-209ENST00000486235 ADGRG1Q9Y653 693 aa11.23□□□□□ -0.61
TMEM39A-209ENST00000486235 UACAQ9BZF9 1416 aa11.23□□□□□ -0.61
TMEM39A-209ENST00000486235 COL17A1Q9UMD9 1497 aaPredicted RBP11.23□□□□□ -0.61
TMEM39A-209ENST00000486235 GLI2P10070 1586 aa11.23□□□□□ -0.61
TMEM39A-209ENST00000486235 IQGAP2Q13576 1575 aa11.23□□□□□ -0.61
TMEM39A-209ENST00000486235 UHRF1BP1LA0JNW5 1464 aa11.22□□□□□ -0.61
TMEM39A-209ENST00000486235 NRG2O14511 850 aaPredicted RBP11.22□□□□□ -0.61
TMEM39A-209ENST00000486235 PDZRN3Q9UPQ7 1066 aa11.21□□□□□ -0.61
TMEM39A-209ENST00000486235 EPRSP07814 1512 aaKnown RBP11.2□□□□□ -0.62
TMEM39A-209ENST00000486235 DISP1Q96F81 1524 aa11.2□□□□□ -0.62
TMEM39A-209ENST00000486235 RCCD1A6NED2 376 aa11.2□□□□□ -0.62
TMEM39A-209ENST00000486235 PRR14Q9BWN1 585 aa11.2□□□□□ -0.62
TMEM39A-209ENST00000486235 TMEM134Q9H6X4 195 aa11.2□□□□□ -0.62
TMEM39A-209ENST00000486235 SEMA3EO15041 775 aa11.19□□□□□ -0.62
TMEM39A-209ENST00000486235 TLL1O43897 1013 aa11.19□□□□□ -0.62
TMEM39A-209ENST00000486235 KDM5BQ9UGL1 1544 aa11.18□□□□□ -0.62
TMEM39A-209ENST00000486235 TEX14Q8IWB6 1497 aa11.17□□□□□ -0.62
TMEM39A-209ENST00000486235 MAP3K4Q9Y6R4 1608 aa11.17□□□□□ -0.62
TMEM39A-209ENST00000486235 HECW2Q9P2P5 1572 aa11.16□□□□□ -0.62
TMEM39A-209ENST00000486235 RNF223E7ERA6 249 aa11.16□□□□□ -0.62
TMEM39A-209ENST00000486235 CFHP08603 1231 aa11.16□□□□□ -0.62
TMEM39A-209ENST00000486235 TMUB1Q9BVT8 246 aa11.16□□□□□ -0.62
TMEM39A-209ENST00000486235 PPEF1O14829 653 aaPredicted RBP11.15□□□□□ -0.62
TMEM39A-209ENST00000486235 FCHSD2O94868 740 aa11.15□□□□□ -0.62
TMEM39A-209ENST00000486235 ZCCHC11Q5TAX3 1644 aaKnown RBP11.15□□□□□ -0.62
TMEM39A-209ENST00000486235 UGGT2Q9NYU1 1516 aa11.14□□□□□ -0.63
TMEM39A-209ENST00000486235 KMT5BQ4FZB7 885 aa11.14□□□□□ -0.63
TMEM39A-209ENST00000486235 KIAA0556O60303 1618 aa11.13□□□□□ -0.63
TMEM39A-209ENST00000486235 RAPGEF2Q9Y4G8 1499 aa11.13□□□□□ -0.63
TMEM39A-209ENST00000486235 ACTN4O43707 911 aaKnown RBP11.13□□□□□ -0.63
TMEM39A-209ENST00000486235 SLC10A3P09131 477 aa11.13□□□□□ -0.63
TMEM39A-209ENST00000486235 SLC19A1P41440 591 aa11.13□□□□□ -0.63
TMEM39A-209ENST00000486235 WDR7Q9Y4E6 1490 aa11.12□□□□□ -0.63
TMEM39A-209ENST00000486235 EMID1Q96A84 441 aaPredicted RBP11.12□□□□□ -0.63
TMEM39A-209ENST00000486235 S1PR4O95977 384 aa11.11□□□□□ -0.63
TMEM39A-209ENST00000486235 P3H3Q8IVL6 736 aa11.11□□□□□ -0.63
TMEM39A-209ENST00000486235 CD109Q6YHK3 1445 aa11.09□□□□□ -0.63
TMEM39A-209ENST00000486235 RBM26Q5T8P6 1007 aaKnown RBP11.09□□□□□ -0.63
TMEM39A-209ENST00000486235 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.08□□□□□ -0.64
TMEM39A-209ENST00000486235 TRIM67Q6ZTA4 783 aa11.08□□□□□ -0.64
TMEM39A-209ENST00000486235 PXYLP1Q8TE99 480 aa11.08□□□□□ -0.64
TMEM39A-209ENST00000486235 ARID3CA6NKF2 412 aa11.07□□□□□ -0.64
TMEM39A-209ENST00000486235 PUS10Q3MIT2 529 aaKnown RBP11.07□□□□□ -0.64
TMEM39A-209ENST00000486235 MAGI3Q5TCQ9 1506 aa11.07□□□□□ -0.64
TMEM39A-209ENST00000486235 OATP04181 439 aa11.06□□□□□ -0.64
TMEM39A-209ENST00000486235 ZNF787Q6DD87 383 aa11.06□□□□□ -0.64
TMEM39A-209ENST00000486235 LIAT1Q6ZQX7 453 aa11.06□□□□□ -0.64
TMEM39A-209ENST00000486235 NR1I2O75469 434 aa11.05□□□□□ -0.64
TMEM39A-209ENST00000486235 ABCA8O94911 1581 aa11.05□□□□□ -0.64
TMEM39A-209ENST00000486235 FECHP22830 423 aa11.05□□□□□ -0.64
TMEM39A-209ENST00000486235 SPRYD7Q5W111 196 aa11.05□□□□□ -0.64
TMEM39A-209ENST00000486235 ANKLE1Q8NAG6 615 aa11.05□□□□□ -0.64
TMEM39A-209ENST00000486235 ADH1BP00325 375 aa11.04□□□□□ -0.64
TMEM39A-209ENST00000486235 GOLGA3Q08378 1498 aa11.04□□□□□ -0.64
TMEM39A-209ENST00000486235 CFAP43Q8NDM7 1665 aa11.04□□□□□ -0.64
TMEM39A-209ENST00000486235 KIF21BO75037 1637 aa11.03□□□□□ -0.64
TMEM39A-209ENST00000486235 METTL3Q86U44 580 aaKnown RBP11.03□□□□□ -0.64
TMEM39A-209ENST00000486235 SCUBE3Q8IX30 993 aa11.03□□□□□ -0.64
TMEM39A-209ENST00000486235 NLRP7Q8WX94 980 aa11.03□□□□□ -0.64
TMEM39A-209ENST00000486235 HIC1Q14526 733 aa11.02□□□□□ -0.65
TMEM39A-209ENST00000486235 ZNF598Q86UK7 904 aaKnown RBP11.02□□□□□ -0.65
TMEM39A-209ENST00000486235 SLC6A16Q9GZN6 736 aa11.02□□□□□ -0.65
TMEM39A-209ENST00000486235 CTTNBP2Q8WZ74 1663 aa11.01□□□□□ -0.65
TMEM39A-209ENST00000486235 TESPA1A2RU30 521 aaPredicted RBP11.01□□□□□ -0.65
TMEM39A-209ENST00000486235 ZNF697Q5TEC3 545 aa11.01□□□□□ -0.65
TMEM39A-209ENST00000486235 TNFRSF10AO00220 468 aa11□□□□□ -0.65
TMEM39A-209ENST00000486235 PKDCCQ504Y2 493 aa11□□□□□ -0.65
TMEM39A-209ENST00000486235 PLA2G2CQ5R387 149 aa11□□□□□ -0.65
TMEM39A-209ENST00000486235 RSPH4AQ5TD94 716 aa11□□□□□ -0.65
TMEM39A-209ENST00000486235 RDH13Q8NBN7 331 aa10.99□□□□□ -0.65
TMEM39A-209ENST00000486235 FBXO41Q8TF61 875 aa10.98□□□□□ -0.65
TMEM39A-209ENST00000486235 SPSB2Q99619 263 aa10.98□□□□□ -0.65
TMEM39A-209ENST00000486235 ARAP3Q8WWN8 1544 aa10.98□□□□□ -0.65
TMEM39A-209ENST00000486235 GNPATO15228 680 aa10.97□□□□□ -0.65
TMEM39A-209ENST00000486235 RAPGEF3O95398 923 aa10.97□□□□□ -0.65
TMEM39A-209ENST00000486235 SMYD5Q6GMV2 418 aa10.97□□□□□ -0.65
TMEM39A-209ENST00000486235 ATP10BO94823 1461 aa10.97□□□□□ -0.65
TMEM39A-209ENST00000486235 PTPRMP28827 1452 aa10.96□□□□□ -0.65
TMEM39A-209ENST00000486235 PRXQ9BXM0 1461 aa10.96□□□□□ -0.65
TMEM39A-209ENST00000486235 DDX11L8A8MPP1 907 aa10.96□□□□□ -0.65
TMEM39A-209ENST00000486235 MYT1Q01538 1121 aa10.96□□□□□ -0.65
TMEM39A-209ENST00000486235 FAM9AQ8IZU1 332 aaPredicted RBP10.96□□□□□ -0.65
TMEM39A-209ENST00000486235 FAM187AA6NFU0 413 aa10.95□□□□□ -0.66
TMEM39A-209ENST00000486235 ARID4BQ4LE39 1312 aaPredicted RBP10.94□□□□□ -0.66
TMEM39A-209ENST00000486235 GPR37O15354 613 aa10.94□□□□□ -0.66
TMEM39A-209ENST00000486235 GDF9O60383 454 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms