RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 CABP2Q9NPB3 220 aa17.26■□□□□ 0.35
SEC13-216ENST00000479868 USP32Q8NFA0 1604 aa17.26■□□□□ 0.35
SEC13-216ENST00000479868 ALKQ9UM73 1620 aa17.25■□□□□ 0.35
SEC13-216ENST00000479868 YTHDC2Q9H6S0 1430 aaKnown RBP17.25■□□□□ 0.35
SEC13-216ENST00000479868 CCDC146Q8IYE0 955 aa17.24■□□□□ 0.35
SEC13-216ENST00000479868 A2ML1A8K2U0 1454 aa17.24■□□□□ 0.35
SEC13-216ENST00000479868 ZNF521Q96K83 1311 aa17.24■□□□□ 0.35
SEC13-216ENST00000479868 MORC1Q86VD1 984 aa17.24■□□□□ 0.35
SEC13-216ENST00000479868 ANKRD36BQ8N2N9 1353 aa17.23■□□□□ 0.35
SEC13-216ENST00000479868 TNNT2P45379 298 aaPredicted RBP17.23■□□□□ 0.35
SEC13-216ENST00000479868 POLR3AO14802 1390 aaPredicted RBP17.22■□□□□ 0.35
SEC13-216ENST00000479868 CCDC136Q96JN2 1154 aa17.22■□□□□ 0.35
SEC13-216ENST00000479868 PRAM1Q96QH2 718 aa17.22■□□□□ 0.35
SEC13-216ENST00000479868 CGNL1Q0VF96 1302 aa17.22■□□□□ 0.35
SEC13-216ENST00000479868 MINK1Q8N4C8 1332 aaPredicted RBP17.2■□□□□ 0.34
SEC13-216ENST00000479868 SHPRHQ149N8 1683 aa17.2■□□□□ 0.34
SEC13-216ENST00000479868 APAF1O14727 1248 aa17.2■□□□□ 0.34
SEC13-216ENST00000479868 SRPK2P78362 688 aaKnown RBP17.2■□□□□ 0.34
SEC13-216ENST00000479868 DUSP27Q5VZP5 1158 aa17.2■□□□□ 0.34
SEC13-216ENST00000479868 RIMS2Q9UQ26 1411 aa17.19■□□□□ 0.34
SEC13-216ENST00000479868 EXOC6Q8TAG9 804 aa17.19■□□□□ 0.34
SEC13-216ENST00000479868 POGKQ9P215 609 aa17.19■□□□□ 0.34
SEC13-216ENST00000479868 A0A1W2PP64 1363 aa17.18■□□□□ 0.34
SEC13-216ENST00000479868 ZMYM3Q14202 1370 aa17.18■□□□□ 0.34
SEC13-216ENST00000479868 GOLGA2Q08379 1002 aa17.18■□□□□ 0.34
SEC13-216ENST00000479868 PLIN1O60240 522 aa17.17■□□□□ 0.34
SEC13-216ENST00000479868 SETD1AO15047 1707 aaKnown RBP17.17■□□□□ 0.34
SEC13-216ENST00000479868 NINLQ9Y2I6 1382 aa17.16■□□□□ 0.34
SEC13-216ENST00000479868 ESF1Q9H501 851 aaKnown RBP17.16■□□□□ 0.34
SEC13-216ENST00000479868 NSD2O96028 1365 aa17.15■□□□□ 0.34
SEC13-216ENST00000479868 ATAD2Q6PL18 1390 aa17.15■□□□□ 0.34
SEC13-216ENST00000479868 MTHFSP49914 203 aa17.15■□□□□ 0.34
SEC13-216ENST00000479868 SLFN5Q08AF3 891 aa17.15■□□□□ 0.34
SEC13-216ENST00000479868 ABCC11Q96J66 1382 aa17.14■□□□□ 0.33
SEC13-216ENST00000479868 CD163L1Q9NR16 1453 aa17.14■□□□□ 0.33
SEC13-216ENST00000479868 SPINK5Q9NQ38 1064 aaPredicted RBP17.14■□□□□ 0.33
SEC13-216ENST00000479868 NRXN3Q9Y4C0 1643 aa17.14■□□□□ 0.33
SEC13-216ENST00000479868 TRMT2AQ8IZ69 625 aaKnown RBP17.12■□□□□ 0.33
SEC13-216ENST00000479868 CDK19Q9BWU1 502 aa17.12■□□□□ 0.33
SEC13-216ENST00000479868 DLC1Q96QB1 1528 aa17.12■□□□□ 0.33
SEC13-216ENST00000479868 WAPLQ7Z5K2 1190 aa17.11■□□□□ 0.33
SEC13-216ENST00000479868 DMRT2Q9Y5R5 561 aa17.11■□□□□ 0.33
SEC13-216ENST00000479868 TERF2IPQ9NYB0 399 aa17.1■□□□□ 0.33
SEC13-216ENST00000479868 DAXXQ9UER7 740 aaPredicted RBP17.1■□□□□ 0.33
SEC13-216ENST00000479868 GGNBP2Q9H3C7 697 aa17.09■□□□□ 0.33
SEC13-216ENST00000479868 NGEFQ8N5V2 710 aa17.09■□□□□ 0.33
SEC13-216ENST00000479868 TNRQ92752 1358 aa17.08■□□□□ 0.33
SEC13-216ENST00000479868 C20orf194Q5TEA3 1177 aa17.08■□□□□ 0.33
SEC13-216ENST00000479868 CFAP53Q96M91 514 aa17.08■□□□□ 0.33
SEC13-216ENST00000479868 METP08581 1390 aa17.08■□□□□ 0.32
SEC13-216ENST00000479868 ANKRD26Q9UPS8 1709 aa17.08■□□□□ 0.32
SEC13-216ENST00000479868 NLRP1Q9C000 1473 aa17.08■□□□□ 0.32
SEC13-216ENST00000479868 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.08■□□□□ 0.32
SEC13-216ENST00000479868 CRBNQ96SW2 442 aa17.08■□□□□ 0.32
SEC13-216ENST00000479868 CABP1Q9NZU7 370 aa17.08■□□□□ 0.32
SEC13-216ENST00000479868 FYB1O15117 783 aa17.07■□□□□ 0.32
SEC13-216ENST00000479868 RUNDC1Q96C34 613 aa17.07■□□□□ 0.32
SEC13-216ENST00000479868 NKTRP30414 1462 aaKnown RBP17.07■□□□□ 0.32
SEC13-216ENST00000479868 IQSEC2Q5JU85 1478 aa17.07■□□□□ 0.32
SEC13-216ENST00000479868 E9PSI1 815 aa17.07■□□□□ 0.32
SEC13-216ENST00000479868 WWC1Q8IX03 1113 aa17.07■□□□□ 0.32
SEC13-216ENST00000479868 UBR1Q8IWV7 1749 aa17.05■□□□□ 0.32
SEC13-216ENST00000479868 NEUROD2Q15784 382 aa17.05■□□□□ 0.32
SEC13-216ENST00000479868 HDGFL2Q7Z4V5 671 aaPredicted RBP17.05■□□□□ 0.32
SEC13-216ENST00000479868 TCP11L2Q8N4U5 519 aa17.05■□□□□ 0.32
SEC13-216ENST00000479868 RRP7AQ9Y3A4 280 aaKnown RBP17.05■□□□□ 0.32
SEC13-216ENST00000479868 MED14O60244 1454 aa17.04■□□□□ 0.32
SEC13-216ENST00000479868 KIF20BQ96Q89 1820 aa17.03■□□□□ 0.32
SEC13-216ENST00000479868 TMEM2Q9UHN6 1383 aa17.02■□□□□ 0.32
SEC13-216ENST00000479868 TXNDC2Q86VQ3 553 aa17.02■□□□□ 0.32
SEC13-216ENST00000479868 U2AF1L5P0DN76 240 aaPredicted RBP17.02■□□□□ 0.31
SEC13-216ENST00000479868 U2AF1Q01081 240 aaKnown RBP eCLIP17.02■□□□□ 0.31
SEC13-216ENST00000479868 HDGFP51858 240 aaKnown RBP17.01■□□□□ 0.31
SEC13-216ENST00000479868 PHF23Q9BUL5 403 aaPredicted RBP17.01■□□□□ 0.31
SEC13-216ENST00000479868 COL3A1P02461 1466 aaPredicted RBP17.01■□□□□ 0.31
SEC13-216ENST00000479868 FANCIQ9NVI1 1328 aa17.01■□□□□ 0.31
SEC13-216ENST00000479868 KNDC1Q76NI1 1749 aa17.01■□□□□ 0.31
SEC13-216ENST00000479868 PRKCSHP14314 528 aaPredicted RBP17.01■□□□□ 0.31
SEC13-216ENST00000479868 ATP7BP35670 1465 aa17■□□□□ 0.31
SEC13-216ENST00000479868 WASLO00401 505 aaPredicted RBP17■□□□□ 0.31
SEC13-216ENST00000479868 BCAR3O75815 825 aa17■□□□□ 0.31
SEC13-216ENST00000479868 CEBPAP49715 358 aaPredicted RBP16.99■□□□□ 0.31
SEC13-216ENST00000479868 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.99■□□□□ 0.31
SEC13-216ENST00000479868 TECPR2O15040 1411 aa16.99■□□□□ 0.31
SEC13-216ENST00000479868 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.99■□□□□ 0.31
SEC13-216ENST00000479868 CPS1P31327 1500 aa16.98■□□□□ 0.31
SEC13-216ENST00000479868 ADGRB2O60241 1585 aa16.98■□□□□ 0.31
SEC13-216ENST00000479868 FAM135BQ49AJ0 1406 aa16.97■□□□□ 0.31
SEC13-216ENST00000479868 PPIP5K1Q6PFW1 1433 aa16.97■□□□□ 0.31
SEC13-216ENST00000479868 ADAMTS13Q76LX8 1427 aa16.97■□□□□ 0.31
SEC13-216ENST00000479868 U2SURPO15042 1029 aaKnown RBP16.96■□□□□ 0.31
SEC13-216ENST00000479868 CCDC27Q2M243 656 aa16.96■□□□□ 0.31
SEC13-216ENST00000479868 MSH5O43196 834 aa16.96■□□□□ 0.31
SEC13-216ENST00000479868 LTKP29376 864 aa16.96■□□□□ 0.31
SEC13-216ENST00000479868 CPSF1Q10570 1443 aaKnown RBP16.96■□□□□ 0.3
SEC13-216ENST00000479868 WDR63Q8IWG1 891 aa16.95■□□□□ 0.3
SEC13-216ENST00000479868 SIRT1Q96EB6 747 aa16.95■□□□□ 0.3
SEC13-216ENST00000479868 NCKAP5LQ9HCH0 1330 aa16.95■□□□□ 0.3
SEC13-216ENST00000479868 PLEKHF1Q96S99 279 aa16.95■□□□□ 0.3
SEC13-216ENST00000479868 PNPLA6Q8IY17 1366 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms