RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 NPHP3Q7Z494 1330 aa26.07■■□□□ 1.76
VIM-204ENST00000478746 RPGRIP1LQ68CZ1 1315 aa26.06■■□□□ 1.76
VIM-204ENST00000478746 HFM1A2PYH4 1435 aa26.05■■□□□ 1.76
VIM-204ENST00000478746 COL22A1Q8NFW1 1626 aaPredicted RBP26.04■■□□□ 1.76
VIM-204ENST00000478746 GJD4Q96KN9 370 aaPredicted RBP26.03■■□□□ 1.76
VIM-204ENST00000478746 BCL9LQ86UU0 1499 aa26.03■■□□□ 1.76
VIM-204ENST00000478746 FOXO3O43524 673 aa26.02■■□□□ 1.76
VIM-204ENST00000478746 PRAG1Q86YV5 1406 aa26.02■■□□□ 1.76
VIM-204ENST00000478746 MYOM2P54296 1465 aa26.02■■□□□ 1.76
VIM-204ENST00000478746 EP400Q96L91 3159 aa26.01■■□□□ 1.75
VIM-204ENST00000478746 XPCQ01831 940 aaPredicted RBP26.01■■□□□ 1.75
VIM-204ENST00000478746 PXDNQ92626 1479 aa25.97■■□□□ 1.75
VIM-204ENST00000478746 LRPPRCP42704 1394 aaKnown RBP25.96■■□□□ 1.75
VIM-204ENST00000478746 NUTM2FA1L443 756 aa25.95■■□□□ 1.74
VIM-204ENST00000478746 NAIPQ13075 1403 aa25.95■■□□□ 1.74
VIM-204ENST00000478746 SLC4A1APQ9BWU0 796 aaKnown RBP25.94■■□□□ 1.74
VIM-204ENST00000478746 MARF1Q9Y4F3 1742 aaKnown RBP25.94■■□□□ 1.74
VIM-204ENST00000478746 UNC5CLQ8IV45 518 aa25.93■■□□□ 1.74
VIM-204ENST00000478746 STK26Q9P289 416 aa25.93■■□□□ 1.74
VIM-204ENST00000478746 CDC42BPGQ6DT37 1551 aa25.93■■□□□ 1.74
VIM-204ENST00000478746 WAPLQ7Z5K2 1190 aa25.92■■□□□ 1.74
VIM-204ENST00000478746 PPLO60437 1756 aa25.91■■□□□ 1.74
VIM-204ENST00000478746 SPATA31A3Q5VYP0 1347 aa25.88■■□□□ 1.73
VIM-204ENST00000478746 ADGRF5Q8IZF2 1346 aa25.88■■□□□ 1.73
VIM-204ENST00000478746 BLMP54132 1417 aaPredicted RBP25.87■■□□□ 1.73
VIM-204ENST00000478746 RALGAPBQ86X10 1494 aa25.86■■□□□ 1.73
VIM-204ENST00000478746 SLIT2O94813 1529 aa25.85■■□□□ 1.73
VIM-204ENST00000478746 SF3B2Q13435 895 aaKnown RBP25.85■■□□□ 1.73
VIM-204ENST00000478746 RGL3Q3MIN7 710 aa25.85■■□□□ 1.73
VIM-204ENST00000478746 KRT28Q7Z3Y7 464 aa25.85■■□□□ 1.73
VIM-204ENST00000478746 DEFB132Q7Z7B7 95 aa25.84■■□□□ 1.73
VIM-204ENST00000478746 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.84■■□□□ 1.73
VIM-204ENST00000478746 TMEM132EQ6IEE7 984 aa25.83■■□□□ 1.73
VIM-204ENST00000478746 GLI3P10071 1580 aa25.82■■□□□ 1.72
VIM-204ENST00000478746 RRBP1Q9P2E9 1410 aaKnown RBP25.82■■□□□ 1.72
VIM-204ENST00000478746 HAP1P54257 671 aaPredicted RBP25.82■■□□□ 1.72
VIM-204ENST00000478746 SEPT12Q8IYM1 358 aa25.82■■□□□ 1.72
VIM-204ENST00000478746 ABCC11Q96J66 1382 aa25.82■■□□□ 1.72
VIM-204ENST00000478746 TECPR2O15040 1411 aa25.81■■□□□ 1.72
VIM-204ENST00000478746 PLEKHH1Q9ULM0 1364 aa25.8■■□□□ 1.72
VIM-204ENST00000478746 CCDC144AA2RUR9 1427 aa25.8■■□□□ 1.72
VIM-204ENST00000478746 PSME1Q06323 249 aa25.78■■□□□ 1.72
VIM-204ENST00000478746 VPS72Q15906 364 aa25.78■■□□□ 1.72
VIM-204ENST00000478746 CCDC9Q9Y3X0 531 aaKnown RBP25.78■■□□□ 1.72
VIM-204ENST00000478746 BRWD3Q6RI45 1802 aa25.78■■□□□ 1.72
VIM-204ENST00000478746 CABLES1Q8TDN4 633 aa25.77■■□□□ 1.72
VIM-204ENST00000478746 ANKRD30BQ9BXX2 1392 aa25.77■■□□□ 1.72
VIM-204ENST00000478746 PLEKHG5O94827 1062 aa25.76■■□□□ 1.71
VIM-204ENST00000478746 ONECUT3O60422 494 aaPredicted RBP25.75■■□□□ 1.71
VIM-204ENST00000478746 PHF8Q9UPP1 1060 aa25.75■■□□□ 1.71
VIM-204ENST00000478746 FMN2Q9NZ56 1722 aa25.74■■□□□ 1.71
VIM-204ENST00000478746 KIF1AQ12756 1690 aa25.74■■□□□ 1.71
VIM-204ENST00000478746 USP32Q8NFA0 1604 aa25.74■■□□□ 1.71
VIM-204ENST00000478746 KRT27Q7Z3Y8 459 aa25.74■■□□□ 1.71
VIM-204ENST00000478746 SIRT1Q96EB6 747 aa25.74■■□□□ 1.71
VIM-204ENST00000478746 LMOD2Q6P5Q4 547 aa25.73■■□□□ 1.71
VIM-204ENST00000478746 YTHDC2Q9H6S0 1430 aaKnown RBP25.71■■□□□ 1.71
VIM-204ENST00000478746 TNS3Q68CZ2 1445 aa25.71■■□□□ 1.71
VIM-204ENST00000478746 SPATA31E1Q6ZUB1 1445 aa25.71■■□□□ 1.71
VIM-204ENST00000478746 KNDC1Q76NI1 1749 aa25.7■■□□□ 1.7
VIM-204ENST00000478746 FAM83GA6ND36 823 aa25.68■■□□□ 1.7
VIM-204ENST00000478746 SBNO1A3KN83 1393 aa25.68■■□□□ 1.7
VIM-204ENST00000478746 RGPD8O14715 1765 aaPredicted RBP25.67■■□□□ 1.7
VIM-204ENST00000478746 A0A0G2JS52 829 aa25.67■■□□□ 1.7
VIM-204ENST00000478746 PIK3C2GO75747 1445 aa25.67■■□□□ 1.7
VIM-204ENST00000478746 BAG6P46379 1132 aa25.67■■□□□ 1.7
VIM-204ENST00000478746 MYT1Q01538 1121 aa25.67■■□□□ 1.7
VIM-204ENST00000478746 MPHOSPH9Q99550 1183 aa25.66■■□□□ 1.7
VIM-204ENST00000478746 ARHGEF10O15013 1369 aa25.66■■□□□ 1.7
VIM-204ENST00000478746 IFT172Q9UG01 1749 aa25.66■■□□□ 1.7
VIM-204ENST00000478746 NWD2Q9ULI1 1742 aa25.66■■□□□ 1.7
VIM-204ENST00000478746 C14orf93Q9H972 538 aaKnown RBP25.65■■□□□ 1.7
VIM-204ENST00000478746 PSDA5PKW4 1024 aaPredicted RBP25.64■■□□□ 1.7
VIM-204ENST00000478746 PLCH1Q4KWH8 1693 aa25.64■■□□□ 1.69
VIM-204ENST00000478746 SAFB2Q14151 953 aaKnown RBP eCLIP25.63■■□□□ 1.69
VIM-204ENST00000478746 DHX57Q6P158 1386 aaKnown RBP25.63■■□□□ 1.69
VIM-204ENST00000478746 NRXN1Q9ULB1 1477 aa25.62■■□□□ 1.69
VIM-204ENST00000478746 FAM98CQ17RN3 349 aaKnown RBP25.62■■□□□ 1.69
VIM-204ENST00000478746 PMFBP1Q8TBY8 1022 aa25.62■■□□□ 1.69
VIM-204ENST00000478746 LRP5O75197 1615 aa25.62■■□□□ 1.69
VIM-204ENST00000478746 HRCP23327 699 aa25.61■■□□□ 1.69
VIM-204ENST00000478746 CFAP70Q5T0N1 1121 aa25.6■■□□□ 1.69
VIM-204ENST00000478746 PRAM1Q96QH2 718 aa25.6■■□□□ 1.69
VIM-204ENST00000478746 BTG4Q9NY30 223 aa25.59■■□□□ 1.69
VIM-204ENST00000478746 POGKQ9P215 609 aa25.58■■□□□ 1.69
VIM-204ENST00000478746 EN1Q05925 392 aaPredicted RBP25.56■■□□□ 1.68
VIM-204ENST00000478746 ABCA3Q99758 1704 aa25.55■■□□□ 1.68
VIM-204ENST00000478746 FAM182BQ5T319 152 aa25.53■■□□□ 1.68
VIM-204ENST00000478746 ANKARQ7Z5J8 1434 aa25.52■■□□□ 1.68
VIM-204ENST00000478746 GPRASP1Q5JY77 1395 aa25.51■■□□□ 1.67
VIM-204ENST00000478746 R3HDM1Q15032 1099 aaKnown RBP25.5■■□□□ 1.67
VIM-204ENST00000478746 SPATA31A5Q5VU36 1347 aa25.49■■□□□ 1.67
VIM-204ENST00000478746 SPATA31A7Q8IWB4 1347 aa25.49■■□□□ 1.67
VIM-204ENST00000478746 NRAPQ86VF7 1730 aa25.49■■□□□ 1.67
VIM-204ENST00000478746 HIRIP3Q9BW71 556 aaPredicted RBP25.48■■□□□ 1.67
VIM-204ENST00000478746 COL14A1Q05707 1796 aaKnown RBP25.47■■□□□ 1.67
VIM-204ENST00000478746 ACIN1Q9UKV3 1341 aaKnown RBP25.45■■□□□ 1.66
VIM-204ENST00000478746 TRAK1Q9UPV9 953 aa25.45■■□□□ 1.66
VIM-204ENST00000478746 DLC1Q96QB1 1528 aa25.45■■□□□ 1.66
VIM-204ENST00000478746 RGPD1P0DJD0 1748 aa25.45■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms