RNA–Protein interactions for RNA: ENST00000470006.1

NCKIPSD-209, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 2

Gene NCKIPSD, Length 814 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-209ENST00000470006 NPHP3Q7Z494 1330 aa28.83■■■□□ 2.21
NCKIPSD-209ENST00000470006 COL22A1Q8NFW1 1626 aaPredicted RBP28.83■■■□□ 2.21
NCKIPSD-209ENST00000470006 XPCQ01831 940 aaPredicted RBP28.82■■■□□ 2.2
NCKIPSD-209ENST00000470006 PPARGC1BQ86YN6 1023 aaKnown RBP28.8■■■□□ 2.2
NCKIPSD-209ENST00000470006 GJD4Q96KN9 370 aaPredicted RBP28.8■■■□□ 2.2
NCKIPSD-209ENST00000470006 HFM1A2PYH4 1435 aa28.78■■■□□ 2.2
NCKIPSD-209ENST00000470006 FOXO3O43524 673 aa28.78■■■□□ 2.2
NCKIPSD-209ENST00000470006 MYOM2P54296 1465 aa28.78■■■□□ 2.2
NCKIPSD-209ENST00000470006 BCL9LQ86UU0 1499 aa28.78■■■□□ 2.2
NCKIPSD-209ENST00000470006 MARF1Q9Y4F3 1742 aaKnown RBP28.77■■■□□ 2.2
NCKIPSD-209ENST00000470006 NUTM2FA1L443 756 aa28.75■■■□□ 2.19
NCKIPSD-209ENST00000470006 RPGRIP1LQ68CZ1 1315 aa28.73■■■□□ 2.19
NCKIPSD-209ENST00000470006 LRPPRCP42704 1394 aaKnown RBP28.73■■■□□ 2.19
NCKIPSD-209ENST00000470006 PXDNQ92626 1479 aa28.72■■■□□ 2.19
NCKIPSD-209ENST00000470006 SF3B2Q13435 895 aaKnown RBP28.7■■■□□ 2.18
NCKIPSD-209ENST00000470006 UNC5CLQ8IV45 518 aa28.7■■■□□ 2.18
NCKIPSD-209ENST00000470006 STK26Q9P289 416 aa28.69■■■□□ 2.18
NCKIPSD-209ENST00000470006 PRAG1Q86YV5 1406 aa28.69■■■□□ 2.18
NCKIPSD-209ENST00000470006 CDC42BPGQ6DT37 1551 aa28.68■■■□□ 2.18
NCKIPSD-209ENST00000470006 BLMP54132 1417 aaPredicted RBP28.67■■■□□ 2.18
NCKIPSD-209ENST00000470006 HAP1P54257 671 aaPredicted RBP28.66■■■□□ 2.18
NCKIPSD-209ENST00000470006 DEFB132Q7Z7B7 95 aa28.66■■■□□ 2.18
NCKIPSD-209ENST00000470006 NAIPQ13075 1403 aa28.65■■■□□ 2.18
NCKIPSD-209ENST00000470006 RALGAPBQ86X10 1494 aa28.65■■■□□ 2.18
NCKIPSD-209ENST00000470006 PPLO60437 1756 aa28.65■■■□□ 2.18
NCKIPSD-209ENST00000470006 WAPLQ7Z5K2 1190 aa28.64■■■□□ 2.18
NCKIPSD-209ENST00000470006 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.63■■■□□ 2.17
NCKIPSD-209ENST00000470006 PLEKHG5O94827 1062 aa28.63■■■□□ 2.17
NCKIPSD-209ENST00000470006 SLC4A1APQ9BWU0 796 aaKnown RBP28.62■■■□□ 2.17
NCKIPSD-209ENST00000470006 CCDC9Q9Y3X0 531 aaKnown RBP28.62■■■□□ 2.17
NCKIPSD-209ENST00000470006 GLI3P10071 1580 aa28.61■■■□□ 2.17
NCKIPSD-209ENST00000470006 BRWD3Q6RI45 1802 aa28.6■■■□□ 2.17
NCKIPSD-209ENST00000470006 SEPT12Q8IYM1 358 aa28.59■■■□□ 2.17
NCKIPSD-209ENST00000470006 SPATA31A3Q5VYP0 1347 aa28.59■■■□□ 2.17
NCKIPSD-209ENST00000470006 SLIT2O94813 1529 aa28.59■■■□□ 2.17
NCKIPSD-209ENST00000470006 KRT28Q7Z3Y7 464 aa28.58■■■□□ 2.17
NCKIPSD-209ENST00000470006 RGL3Q3MIN7 710 aa28.56■■■□□ 2.16
NCKIPSD-209ENST00000470006 ADGRF5Q8IZF2 1346 aa28.56■■■□□ 2.16
NCKIPSD-209ENST00000470006 A0A0G2JS52 829 aa28.54■■■□□ 2.16
NCKIPSD-209ENST00000470006 MYT1Q01538 1121 aa28.54■■■□□ 2.16
NCKIPSD-209ENST00000470006 CCDC144AA2RUR9 1427 aa28.53■■■□□ 2.16
NCKIPSD-209ENST00000470006 TMEM132EQ6IEE7 984 aa28.53■■■□□ 2.16
NCKIPSD-209ENST00000470006 LMOD2Q6P5Q4 547 aa28.53■■■□□ 2.16
NCKIPSD-209ENST00000470006 USP32Q8NFA0 1604 aa28.53■■■□□ 2.16
NCKIPSD-209ENST00000470006 CABLES1Q8TDN4 633 aa28.52■■■□□ 2.16
NCKIPSD-209ENST00000470006 PLEKHH1Q9ULM0 1364 aa28.51■■■□□ 2.16
NCKIPSD-209ENST00000470006 PSME1Q06323 249 aa28.51■■■□□ 2.15
NCKIPSD-209ENST00000470006 VPS72Q15906 364 aa28.51■■■□□ 2.15
NCKIPSD-209ENST00000470006 KRT27Q7Z3Y8 459 aa28.51■■■□□ 2.15
NCKIPSD-209ENST00000470006 KIF1AQ12756 1690 aa28.51■■■□□ 2.15
NCKIPSD-209ENST00000470006 RRBP1Q9P2E9 1410 aaKnown RBP28.51■■■□□ 2.15
NCKIPSD-209ENST00000470006 FMN2Q9NZ56 1722 aa28.49■■■□□ 2.15
NCKIPSD-209ENST00000470006 PSDA5PKW4 1024 aaPredicted RBP28.49■■■□□ 2.15
NCKIPSD-209ENST00000470006 TECPR2O15040 1411 aa28.48■■■□□ 2.15
NCKIPSD-209ENST00000470006 PHF8Q9UPP1 1060 aa28.47■■■□□ 2.15
NCKIPSD-209ENST00000470006 ABCC11Q96J66 1382 aa28.47■■■□□ 2.15
NCKIPSD-209ENST00000470006 BAG6P46379 1132 aa28.46■■■□□ 2.15
NCKIPSD-209ENST00000470006 TNS3Q68CZ2 1445 aa28.45■■■□□ 2.15
NCKIPSD-209ENST00000470006 LRP5O75197 1615 aa28.44■■■□□ 2.14
NCKIPSD-209ENST00000470006 PLCH1Q4KWH8 1693 aa28.44■■■□□ 2.14
NCKIPSD-209ENST00000470006 RGPD8O14715 1765 aaPredicted RBP28.43■■■□□ 2.14
NCKIPSD-209ENST00000470006 KNDC1Q76NI1 1749 aa28.43■■■□□ 2.14
NCKIPSD-209ENST00000470006 ANKRD30BQ9BXX2 1392 aa28.42■■■□□ 2.14
NCKIPSD-209ENST00000470006 ONECUT3O60422 494 aaPredicted RBP28.42■■■□□ 2.14
NCKIPSD-209ENST00000470006 NWD2Q9ULI1 1742 aa28.42■■■□□ 2.14
NCKIPSD-209ENST00000470006 YTHDC2Q9H6S0 1430 aaKnown RBP28.4■■■□□ 2.14
NCKIPSD-209ENST00000470006 IFT172Q9UG01 1749 aa28.39■■■□□ 2.14
NCKIPSD-209ENST00000470006 FAM83GA6ND36 823 aa28.38■■■□□ 2.13
NCKIPSD-209ENST00000470006 HRCP23327 699 aa28.38■■■□□ 2.13
NCKIPSD-209ENST00000470006 FAM98CQ17RN3 349 aaKnown RBP28.38■■■□□ 2.13
NCKIPSD-209ENST00000470006 ARHGEF10O15013 1369 aa28.37■■■□□ 2.13
NCKIPSD-209ENST00000470006 SAFB2Q14151 953 aaKnown RBP eCLIP28.37■■■□□ 2.13
NCKIPSD-209ENST00000470006 SBNO1A3KN83 1393 aa28.36■■■□□ 2.13
NCKIPSD-209ENST00000470006 EN1Q05925 392 aaPredicted RBP28.34■■■□□ 2.13
NCKIPSD-209ENST00000470006 PMFBP1Q8TBY8 1022 aa28.34■■■□□ 2.13
NCKIPSD-209ENST00000470006 PIK3C2GO75747 1445 aa28.34■■■□□ 2.13
NCKIPSD-209ENST00000470006 SPATA31E1Q6ZUB1 1445 aa28.34■■■□□ 2.13
NCKIPSD-209ENST00000470006 ABCA3Q99758 1704 aa28.33■■■□□ 2.13
NCKIPSD-209ENST00000470006 SIRT1Q96EB6 747 aa28.33■■■□□ 2.13
NCKIPSD-209ENST00000470006 BTG4Q9NY30 223 aa28.33■■■□□ 2.13
NCKIPSD-209ENST00000470006 NRXN1Q9ULB1 1477 aa28.31■■■□□ 2.12
NCKIPSD-209ENST00000470006 DHX57Q6P158 1386 aaKnown RBP28.3■■■□□ 2.12
NCKIPSD-209ENST00000470006 FAM182BQ5T319 152 aa28.3■■■□□ 2.12
NCKIPSD-209ENST00000470006 R3HDM1Q15032 1099 aaKnown RBP28.29■■■□□ 2.12
NCKIPSD-209ENST00000470006 PRAM1Q96QH2 718 aa28.29■■■□□ 2.12
NCKIPSD-209ENST00000470006 POGKQ9P215 609 aa28.29■■■□□ 2.12
NCKIPSD-209ENST00000470006 C14orf93Q9H972 538 aaKnown RBP28.27■■■□□ 2.12
NCKIPSD-209ENST00000470006 CFAP70Q5T0N1 1121 aa28.26■■■□□ 2.11
NCKIPSD-209ENST00000470006 MPHOSPH9Q99550 1183 aa28.26■■■□□ 2.11
NCKIPSD-209ENST00000470006 RGPD1P0DJD0 1748 aa28.26■■■□□ 2.11
NCKIPSD-209ENST00000470006 NRAPQ86VF7 1730 aa28.24■■■□□ 2.11
NCKIPSD-209ENST00000470006 GPRASP1Q5JY77 1395 aa28.22■■■□□ 2.11
NCKIPSD-209ENST00000470006 COL14A1Q05707 1796 aaKnown RBP28.21■■■□□ 2.11
NCKIPSD-209ENST00000470006 SPATA31A5Q5VU36 1347 aa28.18■■■□□ 2.1
NCKIPSD-209ENST00000470006 SPATA31A7Q8IWB4 1347 aa28.18■■■□□ 2.1
NCKIPSD-209ENST00000470006 ANKARQ7Z5J8 1434 aa28.18■■■□□ 2.1
NCKIPSD-209ENST00000470006 PAK3O75914 559 aaPredicted RBP28.18■■■□□ 2.1
NCKIPSD-209ENST00000470006 EZH2Q15910 746 aaKnown RBP28.18■■■□□ 2.1
NCKIPSD-209ENST00000470006 HIRIP3Q9BW71 556 aaPredicted RBP28.18■■■□□ 2.1
NCKIPSD-209ENST00000470006 PRDM11Q9NQV5 511 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms