RNA–Protein interactions for RNA: ENST00000470006.1

NCKIPSD-209, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 2

Gene NCKIPSD, Length 814 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-209ENST00000470006 NISCHQ9Y2I1 1504 aa48.13■■■■■ 5.3
NCKIPSD-209ENST00000470006 ABCC9O60706 1549 aa44.19■■■■■ 4.66
NCKIPSD-209ENST00000470006 CCDC180Q9P1Z9 1646 aa43.44■■■■■ 4.54
NCKIPSD-209ENST00000470006 DNAJC5BQ9UF47 199 aa41.96■■■■■ 4.31
NCKIPSD-209ENST00000470006 RB1CC1Q8TDY2 1594 aa41.71■■■■■ 4.27
NCKIPSD-209ENST00000470006 NACADO15069 1562 aa41.24■■■■■ 4.19
NCKIPSD-209ENST00000470006 DCAF8L2P0C7V8 631 aa41.2■■■■■ 4.19
NCKIPSD-209ENST00000470006 PABPN1Q86U42 306 aaKnown RBP eCLIP41.09■■■■■ 4.17
NCKIPSD-209ENST00000470006 UNC13AQ9UPW8 1703 aa40.75■■■■■ 4.11
NCKIPSD-209ENST00000470006 BICRAQ9NZM4 1560 aa40.45■■■■■ 4.07
NCKIPSD-209ENST00000470006 MYO15BQ96JP2 1530 aa40.37■■■■■ 4.05
NCKIPSD-209ENST00000470006 CECR2Q9BXF3 1484 aa39.84■■■■□ 3.97
NCKIPSD-209ENST00000470006 CC2D2AQ9P2K1 1620 aa39.83■■■■□ 3.97
NCKIPSD-209ENST00000470006 SHROOM4Q9ULL8 1493 aa39.8■■■■□ 3.96
NCKIPSD-209ENST00000470006 ZCCHC6Q5VYS8 1495 aaKnown RBP39.71■■■■□ 3.95
NCKIPSD-209ENST00000470006 SCRIBQ14160 1630 aa39.65■■■■□ 3.94
NCKIPSD-209ENST00000470006 DCAF1Q9Y4B6 1507 aa39.64■■■■□ 3.94
NCKIPSD-209ENST00000470006 EIF4G1Q04637 1599 aaKnown RBP39.56■■■■□ 3.92
NCKIPSD-209ENST00000470006 DNAJC5Q9H3Z4 198 aa39.01■■■■□ 3.84
NCKIPSD-209ENST00000470006 CUX2O14529 1486 aa38.26■■■■□ 3.72
NCKIPSD-209ENST00000470006 ERCC6Q03468 1493 aa38.24■■■■□ 3.71
NCKIPSD-209ENST00000470006 NCAPD3P42695 1498 aa38.06■■■■□ 3.68
NCKIPSD-209ENST00000470006 ATAD2BQ9ULI0 1458 aa37.89■■■■□ 3.66
NCKIPSD-209ENST00000470006 SMARCA2P51531 1590 aa37.76■■■■□ 3.64
NCKIPSD-209ENST00000470006 NESP48681 1621 aa37.74■■■■□ 3.63
NCKIPSD-209ENST00000470006 HMGXB3Q12766 1538 aa37.71■■■■□ 3.63
NCKIPSD-209ENST00000470006 SMARCA4P51532 1647 aa37.69■■■■□ 3.62
NCKIPSD-209ENST00000470006 BAZ1BQ9UIG0 1483 aaKnown RBP37.54■■■■□ 3.6
NCKIPSD-209ENST00000470006 BAZ1AQ9NRL2 1556 aaPredicted RBP37.42■■■■□ 3.58
NCKIPSD-209ENST00000470006 THOC2Q8NI27 1593 aaKnown RBP37.41■■■■□ 3.58
NCKIPSD-209ENST00000470006 LAMC3Q9Y6N6 1575 aa37.34■■■■□ 3.57
NCKIPSD-209ENST00000470006 PEG3Q9GZU2 1588 aa37.25■■■■□ 3.55
NCKIPSD-209ENST00000470006 KIF21AQ7Z4S6 1674 aa37.23■■■■□ 3.55
NCKIPSD-209ENST00000470006 TRIM41Q8WV44 630 aa37.21■■■■□ 3.55
NCKIPSD-209ENST00000470006 PDS5BQ9NTI5 1447 aa37.2■■■■□ 3.55
NCKIPSD-209ENST00000470006 MROH2BQ7Z745 1585 aa37.1■■■■□ 3.53
NCKIPSD-209ENST00000470006 CADPSQ9ULU8 1353 aa36.93■■■■□ 3.5
NCKIPSD-209ENST00000470006 MRC2Q9UBG0 1479 aa36.88■■■■□ 3.5
NCKIPSD-209ENST00000470006 WDR62O43379 1518 aa36.76■■■■□ 3.48
NCKIPSD-209ENST00000470006 WIZO95785 1651 aa36.66■■■■□ 3.46
NCKIPSD-209ENST00000470006 CEP164Q9UPV0 1460 aa36.63■■■■□ 3.45
NCKIPSD-209ENST00000470006 OSCARQ8IYS5 282 aa36.53■■■■□ 3.44
NCKIPSD-209ENST00000470006 FANCD2Q9BXW9 1451 aa36.53■■■■□ 3.44
NCKIPSD-209ENST00000470006 CFTRP13569 1480 aa36.33■■■■□ 3.41
NCKIPSD-209ENST00000470006 URB2Q14146 1524 aaKnown RBP36.24■■■■□ 3.39
NCKIPSD-209ENST00000470006 TOP2AP11388 1531 aaKnown RBP36.1■■■■□ 3.37
NCKIPSD-209ENST00000470006 RSF1Q96T23 1441 aaPredicted RBP36.09■■■■□ 3.37
NCKIPSD-209ENST00000470006 RIMBP3CA6NJZ7 1639 aa36.05■■■■□ 3.36
NCKIPSD-209ENST00000470006 RIMBP3BA6NNM3 1639 aa36.05■■■■□ 3.36
NCKIPSD-209ENST00000470006 RIMBP3Q9UFD9 1639 aa36.05■■■■□ 3.36
NCKIPSD-209ENST00000470006 PRDM2Q13029 1718 aa35.94■■■■□ 3.34
NCKIPSD-209ENST00000470006 ZNF608Q9ULD9 1512 aaPredicted RBP35.92■■■■□ 3.34
NCKIPSD-209ENST00000470006 IFT140Q96RY7 1462 aa35.9■■■■□ 3.34
NCKIPSD-209ENST00000470006 ARHGEF11O15085 1522 aa35.85■■■■□ 3.33
NCKIPSD-209ENST00000470006 CYB5RLQ6IPT4 315 aa35.76■■■■□ 3.32
NCKIPSD-209ENST00000470006 TOPBP1Q92547 1522 aa35.75■■■■□ 3.31
NCKIPSD-209ENST00000470006 CCDC88BA6NC98 1476 aa35.74■■■■□ 3.31
NCKIPSD-209ENST00000470006 EIF4G3O43432 1585 aaKnown RBP35.68■■■■□ 3.3
NCKIPSD-209ENST00000470006 TRHP20396 242 aaPredicted RBP35.64■■■■□ 3.3
NCKIPSD-209ENST00000470006 ABCC8Q09428 1581 aa35.64■■■■□ 3.3
NCKIPSD-209ENST00000470006 FBLN2P98095 1184 aa35.6■■■■□ 3.29
NCKIPSD-209ENST00000470006 CHD1O14646 1710 aa35.56■■■■□ 3.28
NCKIPSD-209ENST00000470006 DNMBPQ6XZF7 1577 aa35.55■■■■□ 3.28
NCKIPSD-209ENST00000470006 AQRO60306 1485 aaKnown RBP eCLIP35.55■■■■□ 3.28
NCKIPSD-209ENST00000470006 TARBP1Q13395 1621 aaKnown RBP35.44■■■■□ 3.26
NCKIPSD-209ENST00000470006 ARAP1Q96P48 1450 aa35.44■■■■□ 3.26
NCKIPSD-209ENST00000470006 POLA1P09884 1462 aaPredicted RBP35.34■■■■□ 3.25
NCKIPSD-209ENST00000470006 RAD54L2Q9Y4B4 1467 aa35.27■■■■□ 3.24
NCKIPSD-209ENST00000470006 TDRD9Q8NDG6 1382 aaKnown RBP35.25■■■■□ 3.23
NCKIPSD-209ENST00000470006 SOGA1O94964 1423 aa35.23■■■■□ 3.23
NCKIPSD-209ENST00000470006 CHMP7Q8WUX9 453 aaPredicted RBP35.17■■■■□ 3.22
NCKIPSD-209ENST00000470006 SNAPC4Q5SXM2 1469 aa35.16■■■■□ 3.22
NCKIPSD-209ENST00000470006 AEBP2Q6ZN18 517 aaPredicted RBP35.1■■■■□ 3.21
NCKIPSD-209ENST00000470006 SYNJ1O43426 1573 aa35.06■■■■□ 3.2
NCKIPSD-209ENST00000470006 CLASP1Q7Z460 1538 aa35.06■■■■□ 3.2
NCKIPSD-209ENST00000470006 FGD5Q6ZNL6 1462 aa35.05■■■■□ 3.2
NCKIPSD-209ENST00000470006 WDR97A6NE52 1622 aa35.01■■■■□ 3.19
NCKIPSD-209ENST00000470006 MAGI1Q96QZ7 1491 aaPredicted RBP34.99■■■■□ 3.19
NCKIPSD-209ENST00000470006 GRIN2BQ13224 1484 aa34.96■■■■□ 3.19
NCKIPSD-209ENST00000470006 SYNJ2O15056 1496 aa34.9■■■■□ 3.18
NCKIPSD-209ENST00000470006 CUX1P39880 1505 aa34.89■■■■□ 3.18
NCKIPSD-209ENST00000470006 GAPVD1Q14C86 1478 aa34.81■■■■□ 3.16
NCKIPSD-209ENST00000470006 PBRM1Q86U86 1689 aa34.78■■■■□ 3.16
NCKIPSD-209ENST00000470006 ABCA10Q8WWZ4 1543 aa34.57■■■■□ 3.12
NCKIPSD-209ENST00000470006 ABCA5Q8WWZ7 1642 aa34.56■■■■□ 3.12
NCKIPSD-209ENST00000470006 ERCC6L2Q5T890 1561 aa34.52■■■■□ 3.12
NCKIPSD-209ENST00000470006 GRIN2AQ12879 1464 aa34.49■■■■□ 3.11
NCKIPSD-209ENST00000470006 CEP170Q5SW79 1584 aa34.42■■■■□ 3.1
NCKIPSD-209ENST00000470006 WRNQ14191 1432 aaPredicted RBP eCLIP34.38■■■■□ 3.09
NCKIPSD-209ENST00000470006 ADAMTS12P58397 1594 aa34.37■■■■□ 3.09
NCKIPSD-209ENST00000470006 NUP160Q12769 1436 aa34.35■■■■□ 3.09
NCKIPSD-209ENST00000470006 FHAD1B1AJZ9 1412 aa34.28■■■■□ 3.08
NCKIPSD-209ENST00000470006 SHROOM2Q13796 1616 aa34.26■■■■□ 3.07
NCKIPSD-209ENST00000470006 SUPT5HO00267 1087 aaKnown RBP34.25■■■■□ 3.07
NCKIPSD-209ENST00000470006 KIF13AQ9H1H9 1805 aa34.21■■■■□ 3.07
NCKIPSD-209ENST00000470006 PRG4Q92954 1404 aaPredicted RBP34.18■■■■□ 3.06
NCKIPSD-209ENST00000470006 TOP2BQ02880 1626 aa34.15■■■■□ 3.06
NCKIPSD-209ENST00000470006 BIVM-ERCC5R4GMW8 1640 aa34.15■■■■□ 3.06
NCKIPSD-209ENST00000470006 ERICH3Q5RHP9 1530 aa34.14■■■■□ 3.06
NCKIPSD-209ENST00000470006 JPH4Q96JJ6 628 aa34.12■■■■□ 3.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms