RNA–Protein interactions for RNA: ENST00000456385.5

CLIP4-208, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 2

Gene CLIP4, Length 2,311 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-208ENST00000456385 DDIT3P35638 169 aa13.01□□□□□ -0.33
CLIP4-208ENST00000456385 ATP10AO60312 1499 aa13.01□□□□□ -0.33
CLIP4-208ENST00000456385 IFT140Q96RY7 1462 aa13.01□□□□□ -0.33
CLIP4-208ENST00000456385 IQGAP3Q86VI3 1631 aa13□□□□□ -0.33
CLIP4-208ENST00000456385 MADDQ8WXG6 1647 aa13□□□□□ -0.33
CLIP4-208ENST00000456385 MVPQ14764 893 aaKnown RBP13□□□□□ -0.33
CLIP4-208ENST00000456385 RUNDC1Q96C34 613 aa12.99□□□□□ -0.33
CLIP4-208ENST00000456385 CDC42BPBQ9Y5S2 1711 aa12.99□□□□□ -0.33
CLIP4-208ENST00000456385 FTSJ3Q8IY81 847 aaKnown RBP12.98□□□□□ -0.33
CLIP4-208ENST00000456385 FOXD4L1Q9NU39 408 aa12.98□□□□□ -0.33
CLIP4-208ENST00000456385 POLR3AO14802 1390 aaPredicted RBP12.98□□□□□ -0.33
CLIP4-208ENST00000456385 PHF23Q9BUL5 403 aaPredicted RBP12.97□□□□□ -0.33
CLIP4-208ENST00000456385 ISY1Q9ULR0 285 aaKnown RBP12.97□□□□□ -0.33
CLIP4-208ENST00000456385 KIAA1211Q6ZU35 1233 aa12.97□□□□□ -0.33
CLIP4-208ENST00000456385 NCOA3Q9Y6Q9 1424 aa12.97□□□□□ -0.33
CLIP4-208ENST00000456385 DZIP1LQ8IYY4 767 aaKnown RBP12.96□□□□□ -0.33
CLIP4-208ENST00000456385 SCAPERQ9BY12 1400 aa12.96□□□□□ -0.33
CLIP4-208ENST00000456385 WDR63Q8IWG1 891 aa12.96□□□□□ -0.34
CLIP4-208ENST00000456385 TPM2P07951 284 aa12.95□□□□□ -0.34
CLIP4-208ENST00000456385 CFAP70Q5T0N1 1121 aa12.95□□□□□ -0.34
CLIP4-208ENST00000456385 ZKSCAN2Q63HK3 967 aa12.95□□□□□ -0.34
CLIP4-208ENST00000456385 CD2BP2O95400 341 aaKnown RBP12.95□□□□□ -0.34
CLIP4-208ENST00000456385 MORC1Q86VD1 984 aa12.95□□□□□ -0.34
CLIP4-208ENST00000456385 TSR2Q969E8 191 aaKnown RBP12.95□□□□□ -0.34
CLIP4-208ENST00000456385 PREX2Q70Z35 1606 aa12.95□□□□□ -0.34
CLIP4-208ENST00000456385 ERVK-7P63135 1459 aa12.95□□□□□ -0.34
CLIP4-208ENST00000456385 HSP90AB1P08238 724 aaKnown RBP12.94□□□□□ -0.34
CLIP4-208ENST00000456385 RAB3GAP1Q15042 981 aa12.94□□□□□ -0.34
CLIP4-208ENST00000456385 SMC5Q8IY18 1101 aa12.94□□□□□ -0.34
CLIP4-208ENST00000456385 PDCL3Q9H2J4 239 aa12.94□□□□□ -0.34
CLIP4-208ENST00000456385 KDM5AP29375 1690 aaKnown RBP12.94□□□□□ -0.34
CLIP4-208ENST00000456385 TRIM27P14373 513 aa12.94□□□□□ -0.34
CLIP4-208ENST00000456385 RBM25P49756 843 aaKnown RBP12.94□□□□□ -0.34
CLIP4-208ENST00000456385 ITPRIPQ8IWB1 547 aa12.94□□□□□ -0.34
CLIP4-208ENST00000456385 GBP4Q96PP9 640 aa12.94□□□□□ -0.34
CLIP4-208ENST00000456385 ARHGAP5Q13017 1502 aa12.93□□□□□ -0.34
CLIP4-208ENST00000456385 MAST1Q9Y2H9 1570 aa12.93□□□□□ -0.34
CLIP4-208ENST00000456385 IQSEC2Q5JU85 1478 aa12.93□□□□□ -0.34
CLIP4-208ENST00000456385 HDAC1Q13547 482 aaPredicted RBP12.93□□□□□ -0.34
CLIP4-208ENST00000456385 SNX21Q969T3 373 aa12.93□□□□□ -0.34
CLIP4-208ENST00000456385 CEP152O94986 1710 aa12.93□□□□□ -0.34
CLIP4-208ENST00000456385 NASPP49321 788 aaPredicted RBP12.92□□□□□ -0.34
CLIP4-208ENST00000456385 RBM10P98175 930 aaKnown RBP12.92□□□□□ -0.34
CLIP4-208ENST00000456385 SMC4Q9NTJ3 1288 aa12.92□□□□□ -0.34
CLIP4-208ENST00000456385 SHPRHQ149N8 1683 aa12.92□□□□□ -0.34
CLIP4-208ENST00000456385 MTHFSP49914 203 aa12.91□□□□□ -0.34
CLIP4-208ENST00000456385 KIF2CQ99661 725 aa12.91□□□□□ -0.34
CLIP4-208ENST00000456385 LNPKQ9C0E8 428 aa12.91□□□□□ -0.34
CLIP4-208ENST00000456385 SKOR2Q2VWA4 1001 aaPredicted RBP12.91□□□□□ -0.34
CLIP4-208ENST00000456385 RBM42Q9BTD8 480 aaKnown RBP12.91□□□□□ -0.34
CLIP4-208ENST00000456385 DUOX2Q9NRD8 1548 aa12.91□□□□□ -0.34
CLIP4-208ENST00000456385 TTC37Q6PGP7 1564 aa12.91□□□□□ -0.34
CLIP4-208ENST00000456385 SSFA2P28290 1259 aa12.9□□□□□ -0.34
CLIP4-208ENST00000456385 CCDC173Q0VFZ6 552 aa12.9□□□□□ -0.34
CLIP4-208ENST00000456385 ZSCAN30Q86W11 494 aa12.9□□□□□ -0.34
CLIP4-208ENST00000456385 CIZ1Q9ULV3 898 aaPredicted RBP12.9□□□□□ -0.34
CLIP4-208ENST00000456385 NSD3Q9BZ95 1437 aa12.9□□□□□ -0.34
CLIP4-208ENST00000456385 RIPK4P57078 832 aa12.9□□□□□ -0.34
CLIP4-208ENST00000456385 EXOSC9Q06265 439 aaKnown RBP12.9□□□□□ -0.34
CLIP4-208ENST00000456385 CCDC27Q2M243 656 aa12.9□□□□□ -0.34
CLIP4-208ENST00000456385 SSH1Q8WYL5 1049 aa12.9□□□□□ -0.34
CLIP4-208ENST00000456385 PPP1R9BQ96SB3 815 aa12.9□□□□□ -0.34
CLIP4-208ENST00000456385 SLC12A5Q9H2X9 1139 aa12.9□□□□□ -0.34
CLIP4-208ENST00000456385 SPHKAPQ2M3C7 1700 aa12.89□□□□□ -0.35
CLIP4-208ENST00000456385 OFD1O75665 1012 aa12.89□□□□□ -0.35
CLIP4-208ENST00000456385 TMEM57Q8N5G2 664 aa12.89□□□□□ -0.35
CLIP4-208ENST00000456385 NOB1Q9ULX3 412 aaKnown RBP12.89□□□□□ -0.35
CLIP4-208ENST00000456385 DDX19BQ9UMR2 479 aa12.89□□□□□ -0.35
CLIP4-208ENST00000456385 U2AF1L5P0DN76 240 aaPredicted RBP12.88□□□□□ -0.35
CLIP4-208ENST00000456385 U2AF1Q01081 240 aaKnown RBP eCLIP12.88□□□□□ -0.35
CLIP4-208ENST00000456385 ADGRF5Q8IZF2 1346 aa12.88□□□□□ -0.35
CLIP4-208ENST00000456385 KANK1Q14678 1352 aa12.88□□□□□ -0.35
CLIP4-208ENST00000456385 NUCB1Q02818 461 aa12.88□□□□□ -0.35
CLIP4-208ENST00000456385 ATF7IPQ6VMQ6 1270 aa12.88□□□□□ -0.35
CLIP4-208ENST00000456385 DDX49Q9Y6V7 483 aaKnown RBP12.88□□□□□ -0.35
CLIP4-208ENST00000456385 MSNP26038 577 aaKnown RBP12.87□□□□□ -0.35
CLIP4-208ENST00000456385 GAS2L2Q8NHY3 880 aa12.87□□□□□ -0.35
CLIP4-208ENST00000456385 CLTCL1P53675 1640 aa12.87□□□□□ -0.35
CLIP4-208ENST00000456385 ZBTB40Q9NUA8 1239 aa12.87□□□□□ -0.35
CLIP4-208ENST00000456385 TRPM2O94759 1503 aa12.86□□□□□ -0.35
CLIP4-208ENST00000456385 K7ELQ4 463 aaPredicted RBP12.86□□□□□ -0.35
CLIP4-208ENST00000456385 STAC3Q96MF2 364 aa12.86□□□□□ -0.35
CLIP4-208ENST00000456385 FAM13BQ9NYF5 915 aa12.86□□□□□ -0.35
CLIP4-208ENST00000456385 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.86□□□□□ -0.35
CLIP4-208ENST00000456385 ERCC6Q03468 1493 aa12.86□□□□□ -0.35
CLIP4-208ENST00000456385 CHD1LQ86WJ1 897 aa12.85□□□□□ -0.35
CLIP4-208ENST00000456385 ANP32BQ92688 251 aaKnown RBP12.85□□□□□ -0.35
CLIP4-208ENST00000456385 R3HCC1Q9Y3T6 440 aaKnown RBP12.85□□□□□ -0.35
CLIP4-208ENST00000456385 KLHL40Q2TBA0 621 aa12.85□□□□□ -0.35
CLIP4-208ENST00000456385 ZNF518AQ6AHZ1 1483 aa12.85□□□□□ -0.35
CLIP4-208ENST00000456385 BAG4O95429 457 aaKnown RBP12.84□□□□□ -0.35
CLIP4-208ENST00000456385 PTPRTO14522 1441 aa12.84□□□□□ -0.35
CLIP4-208ENST00000456385 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.84□□□□□ -0.35
CLIP4-208ENST00000456385 NCLP19338 710 aaKnown RBP12.83□□□□□ -0.36
CLIP4-208ENST00000456385 PTMSP20962 102 aa12.83□□□□□ -0.36
CLIP4-208ENST00000456385 TBC1D9Q6ZT07 1266 aa12.83□□□□□ -0.36
CLIP4-208ENST00000456385 CFAP53Q96M91 514 aa12.83□□□□□ -0.36
CLIP4-208ENST00000456385 ARID3AQ99856 593 aa12.83□□□□□ -0.36
CLIP4-208ENST00000456385 GOLGA6L22H0YM25 854 aa12.83□□□□□ -0.36
CLIP4-208ENST00000456385 XPCQ01831 940 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms