RNA–Protein interactions for RNA: ENST00000455661.5

PTPRE-204, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 2,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-204ENST00000455661 HSCBQ8IWL3 235 aa17.35■□□□□ 0.37
PTPRE-204ENST00000455661 CEP152O94986 1710 aa17.34■□□□□ 0.37
PTPRE-204ENST00000455661 TRPM2O94759 1503 aa17.34■□□□□ 0.37
PTPRE-204ENST00000455661 MFAP1P55081 439 aaKnown RBP17.33■□□□□ 0.37
PTPRE-204ENST00000455661 HSP90AA2PQ14568 343 aaPredicted RBP17.33■□□□□ 0.37
PTPRE-204ENST00000455661 RRP9O43818 475 aaKnown RBP17.33■□□□□ 0.36
PTPRE-204ENST00000455661 GRPEL1Q9HAV7 217 aa17.33■□□□□ 0.36
PTPRE-204ENST00000455661 RRP7AQ9Y3A4 280 aaKnown RBP17.33■□□□□ 0.36
PTPRE-204ENST00000455661 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.33■□□□□ 0.36
PTPRE-204ENST00000455661 MVPQ14764 893 aaKnown RBP17.32■□□□□ 0.36
PTPRE-204ENST00000455661 TCP11L2Q8N4U5 519 aa17.32■□□□□ 0.36
PTPRE-204ENST00000455661 TNNQ9UQP3 1299 aa17.32■□□□□ 0.36
PTPRE-204ENST00000455661 KIAA1210Q9ULL0 1709 aa17.32■□□□□ 0.36
PTPRE-204ENST00000455661 BCL2L13Q9BXK5 485 aa17.32■□□□□ 0.36
PTPRE-204ENST00000455661 ERVK-7P63135 1459 aa17.32■□□□□ 0.36
PTPRE-204ENST00000455661 MORC1Q86VD1 984 aa17.31■□□□□ 0.36
PTPRE-204ENST00000455661 PLPPR3Q6T4P5 718 aa17.31■□□□□ 0.36
PTPRE-204ENST00000455661 FTSJ3Q8IY81 847 aaKnown RBP17.31■□□□□ 0.36
PTPRE-204ENST00000455661 CCDC27Q2M243 656 aa17.3■□□□□ 0.36
PTPRE-204ENST00000455661 ZKSCAN2Q63HK3 967 aa17.3■□□□□ 0.36
PTPRE-204ENST00000455661 ESPNB1AK53 854 aa17.29■□□□□ 0.36
PTPRE-204ENST00000455661 TRIM44Q96DX7 344 aaPredicted RBP17.29■□□□□ 0.36
PTPRE-204ENST00000455661 PTPRTO14522 1441 aa17.29■□□□□ 0.36
PTPRE-204ENST00000455661 DZIP1LQ8IYY4 767 aaKnown RBP17.29■□□□□ 0.36
PTPRE-204ENST00000455661 KANK1Q14678 1352 aa17.28■□□□□ 0.36
PTPRE-204ENST00000455661 RTEL1-TNFRSF6BF6WH68 1400 aa17.28■□□□□ 0.36
PTPRE-204ENST00000455661 CLTCL1P53675 1640 aa17.28■□□□□ 0.36
PTPRE-204ENST00000455661 PKNOX2Q96KN3 472 aa17.27■□□□□ 0.36
PTPRE-204ENST00000455661 IQSEC2Q5JU85 1478 aa17.27■□□□□ 0.36
PTPRE-204ENST00000455661 CFAP53Q96M91 514 aa17.27■□□□□ 0.35
PTPRE-204ENST00000455661 SHPRHQ149N8 1683 aa17.26■□□□□ 0.35
PTPRE-204ENST00000455661 PTMSP20962 102 aa17.26■□□□□ 0.35
PTPRE-204ENST00000455661 HDAC1Q13547 482 aaPredicted RBP17.26■□□□□ 0.35
PTPRE-204ENST00000455661 NCBP3Q53F19 620 aaKnown RBP17.26■□□□□ 0.35
PTPRE-204ENST00000455661 CFAP70Q5T0N1 1121 aa17.26■□□□□ 0.35
PTPRE-204ENST00000455661 CT47B1P0C2W7 299 aaPredicted RBP17.25■□□□□ 0.35
PTPRE-204ENST00000455661 GBP4Q96PP9 640 aa17.25■□□□□ 0.35
PTPRE-204ENST00000455661 TNNT2P45379 298 aaPredicted RBP17.25■□□□□ 0.35
PTPRE-204ENST00000455661 SKOR2Q2VWA4 1001 aaPredicted RBP17.25■□□□□ 0.35
PTPRE-204ENST00000455661 EFCAB2Q5VUJ9 269 aa17.25■□□□□ 0.35
PTPRE-204ENST00000455661 VSIG10Q8N0Z9 540 aa17.25■□□□□ 0.35
PTPRE-204ENST00000455661 ZNF692Q9BU19 519 aaPredicted RBP17.25■□□□□ 0.35
PTPRE-204ENST00000455661 SNX21Q969T3 373 aa17.24■□□□□ 0.35
PTPRE-204ENST00000455661 CIZ1Q9ULV3 898 aaPredicted RBP17.24■□□□□ 0.35
PTPRE-204ENST00000455661 NSD3Q9BZ95 1437 aa17.23■□□□□ 0.35
PTPRE-204ENST00000455661 DDX19BQ9UMR2 479 aa17.23■□□□□ 0.35
PTPRE-204ENST00000455661 NCOA3Q9Y6Q9 1424 aa17.22■□□□□ 0.35
PTPRE-204ENST00000455661 SHROOM2Q13796 1616 aa17.22■□□□□ 0.35
PTPRE-204ENST00000455661 DDIT3P35638 169 aa17.21■□□□□ 0.35
PTPRE-204ENST00000455661 SBNO2Q9Y2G9 1366 aa17.21■□□□□ 0.35
PTPRE-204ENST00000455661 HSP90AB1P08238 724 aaKnown RBP17.21■□□□□ 0.35
PTPRE-204ENST00000455661 RBM25P49756 843 aaKnown RBP17.21■□□□□ 0.35
PTPRE-204ENST00000455661 SMC4Q9NTJ3 1288 aa17.21■□□□□ 0.35
PTPRE-204ENST00000455661 PLCH2O75038 1416 aa17.21■□□□□ 0.35
PTPRE-204ENST00000455661 MYOM2P54296 1465 aa17.21■□□□□ 0.35
PTPRE-204ENST00000455661 MAP3K4Q9Y6R4 1608 aa17.21■□□□□ 0.35
PTPRE-204ENST00000455661 MTHFSP49914 203 aa17.2■□□□□ 0.34
PTPRE-204ENST00000455661 SMC5Q8IY18 1101 aa17.2■□□□□ 0.34
PTPRE-204ENST00000455661 TNPO1Q92973 898 aaKnown RBP17.2■□□□□ 0.34
PTPRE-204ENST00000455661 NEURL4Q96JN8 1562 aa17.2■□□□□ 0.34
PTPRE-204ENST00000455661 SPAG9O60271 1321 aaKnown RBP17.2■□□□□ 0.34
PTPRE-204ENST00000455661 TPM2P07951 284 aa17.2■□□□□ 0.34
PTPRE-204ENST00000455661 ITPRIPQ8IWB1 547 aa17.2■□□□□ 0.34
PTPRE-204ENST00000455661 TET3O43151 1660 aa17.19■□□□□ 0.34
PTPRE-204ENST00000455661 ABCA6Q8N139 1617 aa17.19■□□□□ 0.34
PTPRE-204ENST00000455661 ERBB4Q15303 1308 aa17.19■□□□□ 0.34
PTPRE-204ENST00000455661 ZNF518AQ6AHZ1 1483 aa17.18■□□□□ 0.34
PTPRE-204ENST00000455661 ADGRF5Q8IZF2 1346 aa17.18■□□□□ 0.34
PTPRE-204ENST00000455661 ZMYND15Q9H091 742 aa17.18■□□□□ 0.34
PTPRE-204ENST00000455661 TRAPPC8Q9Y2L5 1435 aa17.18■□□□□ 0.34
PTPRE-204ENST00000455661 RAB3GAP1Q15042 981 aa17.18■□□□□ 0.34
PTPRE-204ENST00000455661 MYO3AQ8NEV4 1616 aa17.17■□□□□ 0.34
PTPRE-204ENST00000455661 ABCC1P33527 1531 aa17.17■□□□□ 0.34
PTPRE-204ENST00000455661 U2AF1L5P0DN76 240 aaPredicted RBP17.17■□□□□ 0.34
PTPRE-204ENST00000455661 TRIM27P14373 513 aa17.17■□□□□ 0.34
PTPRE-204ENST00000455661 U2AF1Q01081 240 aaKnown RBP eCLIP17.17■□□□□ 0.34
PTPRE-204ENST00000455661 ATF7IPQ6VMQ6 1270 aa17.16■□□□□ 0.34
PTPRE-204ENST00000455661 ANP32BQ92688 251 aaKnown RBP17.16■□□□□ 0.34
PTPRE-204ENST00000455661 GAS2L3Q86XJ1 694 aa17.15■□□□□ 0.34
PTPRE-204ENST00000455661 SLC12A5Q9H2X9 1139 aa17.15■□□□□ 0.34
PTPRE-204ENST00000455661 CCDC173Q0VFZ6 552 aa17.15■□□□□ 0.34
PTPRE-204ENST00000455661 ADGRL1O94910 1474 aa17.15■□□□□ 0.34
PTPRE-204ENST00000455661 GOLGA6L22H0YM25 854 aa17.14■□□□□ 0.33
PTPRE-204ENST00000455661 EXOSC9Q06265 439 aaKnown RBP17.14■□□□□ 0.33
PTPRE-204ENST00000455661 DEPDC5O75140 1603 aa17.14■□□□□ 0.33
PTPRE-204ENST00000455661 NUCB1Q02818 461 aa17.14■□□□□ 0.33
PTPRE-204ENST00000455661 TSR2Q969E8 191 aaKnown RBP17.14■□□□□ 0.33
PTPRE-204ENST00000455661 IPO8O15397 1037 aaKnown RBP17.13■□□□□ 0.33
PTPRE-204ENST00000455661 SSH1Q8WYL5 1049 aa17.13■□□□□ 0.33
PTPRE-204ENST00000455661 NOB1Q9ULX3 412 aaKnown RBP17.12■□□□□ 0.33
PTPRE-204ENST00000455661 USP32Q8NFA0 1604 aa17.12■□□□□ 0.33
PTPRE-204ENST00000455661 ZBTB40Q9NUA8 1239 aa17.12■□□□□ 0.33
PTPRE-204ENST00000455661 KIF1BO60333 1816 aa17.11■□□□□ 0.33
PTPRE-204ENST00000455661 TMEM57Q8N5G2 664 aa17.11■□□□□ 0.33
PTPRE-204ENST00000455661 CHD1LQ86WJ1 897 aa17.1■□□□□ 0.33
PTPRE-204ENST00000455661 LNPKQ9C0E8 428 aa17.1■□□□□ 0.33
PTPRE-204ENST00000455661 ADGRB2O60241 1585 aa17.1■□□□□ 0.33
PTPRE-204ENST00000455661 NASPP49321 788 aaPredicted RBP17.1■□□□□ 0.33
PTPRE-204ENST00000455661 BMP2KLQ5H9B9 411 aa17.1■□□□□ 0.33
PTPRE-204ENST00000455661 AFAP1Q8N556 730 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms