RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 C19orf44Q9H6X5 657 aa13.42□□□□□ -0.26
TCOF1-204ENST00000427724 MS4A1P11836 297 aa13.42□□□□□ -0.26
TCOF1-204ENST00000427724 KCNJ4P48050 445 aa13.42□□□□□ -0.26
TCOF1-204ENST00000427724 PLEKHO1Q53GL0 409 aaPredicted RBP13.42□□□□□ -0.26
TCOF1-204ENST00000427724 IPO8O15397 1037 aaKnown RBP13.41□□□□□ -0.26
TCOF1-204ENST00000427724 AIMP1Q12904 312 aaKnown RBP13.41□□□□□ -0.26
TCOF1-204ENST00000427724 RRS1Q15050 365 aaKnown RBP13.41□□□□□ -0.26
TCOF1-204ENST00000427724 ABCC5O15440 1437 aa13.41□□□□□ -0.26
TCOF1-204ENST00000427724 KIAA1107Q9UPP5 1409 aa13.41□□□□□ -0.26
TCOF1-204ENST00000427724 KCNA6P17658 529 aa13.41□□□□□ -0.26
TCOF1-204ENST00000427724 PDE4AP27815 886 aa13.41□□□□□ -0.26
TCOF1-204ENST00000427724 GPATCH8Q9UKJ3 1502 aaKnown RBP13.41□□□□□ -0.26
TCOF1-204ENST00000427724 FBXW7Q969H0 707 aa13.41□□□□□ -0.26
TCOF1-204ENST00000427724 KAT6BQ8WYB5 2073 aa13.41□□□□□ -0.26
TCOF1-204ENST00000427724 THOC2Q8NI27 1593 aaKnown RBP13.4□□□□□ -0.26
TCOF1-204ENST00000427724 MTHFSP49914 203 aa13.4□□□□□ -0.26
TCOF1-204ENST00000427724 CLUAP1Q96AJ1 413 aa13.4□□□□□ -0.26
TCOF1-204ENST00000427724 BCL11BQ9C0K0 894 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-204ENST00000427724 SMC4Q9NTJ3 1288 aa13.4□□□□□ -0.26
TCOF1-204ENST00000427724 CABLES1Q8TDN4 633 aa13.4□□□□□ -0.26
TCOF1-204ENST00000427724 FGD1P98174 961 aa13.39□□□□□ -0.27
TCOF1-204ENST00000427724 ZNF530Q6P9A1 599 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-204ENST00000427724 NEXNQ0ZGT2 675 aa13.39□□□□□ -0.27
TCOF1-204ENST00000427724 NAP1L2Q9ULW6 460 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-204ENST00000427724 BECN1Q14457 450 aa13.39□□□□□ -0.27
TCOF1-204ENST00000427724 SUPT6HQ7KZ85 1726 aaKnown RBP13.39□□□□□ -0.27
TCOF1-204ENST00000427724 RIPK4P57078 832 aa13.39□□□□□ -0.27
TCOF1-204ENST00000427724 CABP4P57796 275 aa13.39□□□□□ -0.27
TCOF1-204ENST00000427724 KCNH5Q8NCM2 988 aa13.38□□□□□ -0.27
TCOF1-204ENST00000427724 CRBNQ96SW2 442 aa13.38□□□□□ -0.27
TCOF1-204ENST00000427724 NPHP3Q7Z494 1330 aa13.38□□□□□ -0.27
TCOF1-204ENST00000427724 SULT6B1Q6IMI4 303 aa13.38□□□□□ -0.27
TCOF1-204ENST00000427724 KDM5BQ9UGL1 1544 aa13.38□□□□□ -0.27
TCOF1-204ENST00000427724 EXOC5O00471 708 aa13.37□□□□□ -0.27
TCOF1-204ENST00000427724 ABCC10Q5T3U5 1492 aa13.37□□□□□ -0.27
TCOF1-204ENST00000427724 LRRC59Q96AG4 307 aaKnown RBP13.37□□□□□ -0.27
TCOF1-204ENST00000427724 NCOA1Q15788 1441 aa13.37□□□□□ -0.27
TCOF1-204ENST00000427724 WASLO00401 505 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-204ENST00000427724 CDCA7LQ96GN5 454 aa13.37□□□□□ -0.27
TCOF1-204ENST00000427724 TSPYL4Q9UJ04 414 aa13.37□□□□□ -0.27
TCOF1-204ENST00000427724 SLC4A3P48751 1232 aa13.36□□□□□ -0.27
TCOF1-204ENST00000427724 PNISRQ8TF01 805 aaKnown RBP13.36□□□□□ -0.27
TCOF1-204ENST00000427724 PTPN23Q9H3S7 1636 aa13.36□□□□□ -0.27
TCOF1-204ENST00000427724 LRPPRCP42704 1394 aaKnown RBP13.36□□□□□ -0.27
TCOF1-204ENST00000427724 ITPRIPQ8IWB1 547 aa13.36□□□□□ -0.27
TCOF1-204ENST00000427724 ANP32BQ92688 251 aaKnown RBP13.36□□□□□ -0.27
TCOF1-204ENST00000427724 RAPGEF6Q8TEU7 1601 aa13.36□□□□□ -0.27
TCOF1-204ENST00000427724 SPG7Q9UQ90 795 aa13.36□□□□□ -0.27
TCOF1-204ENST00000427724 APAF1O14727 1248 aa13.36□□□□□ -0.27
TCOF1-204ENST00000427724 PTCD1O75127 700 aaKnown RBP13.35□□□□□ -0.27
TCOF1-204ENST00000427724 BCL2L13Q9BXK5 485 aa13.35□□□□□ -0.27
TCOF1-204ENST00000427724 HDAC5Q9UQL6 1122 aa13.35□□□□□ -0.27
TCOF1-204ENST00000427724 UGGT2Q9NYU1 1516 aa13.34□□□□□ -0.27
TCOF1-204ENST00000427724 SMG6Q86US8 1419 aaKnown RBP13.34□□□□□ -0.27
TCOF1-204ENST00000427724 MPRIPQ6WCQ1 1025 aa13.34□□□□□ -0.27
TCOF1-204ENST00000427724 TRIM44Q96DX7 344 aaPredicted RBP13.33□□□□□ -0.27
TCOF1-204ENST00000427724 C9orf78Q9NZ63 289 aaPredicted RBP13.33□□□□□ -0.27
TCOF1-204ENST00000427724 ZNF428Q96B54 188 aa13.33□□□□□ -0.28
TCOF1-204ENST00000427724 BRPF3Q9ULD4 1205 aa13.33□□□□□ -0.28
TCOF1-204ENST00000427724 GSE1Q14687 1217 aa13.33□□□□□ -0.28
TCOF1-204ENST00000427724 BICDL1Q6ZP65 573 aa13.33□□□□□ -0.28
TCOF1-204ENST00000427724 ATP10AO60312 1499 aa13.33□□□□□ -0.28
TCOF1-204ENST00000427724 USHBP1Q8N6Y0 703 aa13.33□□□□□ -0.28
TCOF1-204ENST00000427724 KIAA0556O60303 1618 aa13.32□□□□□ -0.28
TCOF1-204ENST00000427724 NOS1P29475 1434 aa13.32□□□□□ -0.28
TCOF1-204ENST00000427724 NME9Q86XW9 330 aa13.32□□□□□ -0.28
TCOF1-204ENST00000427724 SYCP2Q9BX26 1530 aa13.32□□□□□ -0.28
TCOF1-204ENST00000427724 VSIG10Q8N0Z9 540 aa13.31□□□□□ -0.28
TCOF1-204ENST00000427724 DDX58O95786 925 aaKnown RBP13.31□□□□□ -0.28
TCOF1-204ENST00000427724 CASC1Q6TDU7 716 aa13.31□□□□□ -0.28
TCOF1-204ENST00000427724 RIC3Q7Z5B4 369 aa13.31□□□□□ -0.28
TCOF1-204ENST00000427724 SLAIN2Q9P270 581 aa13.31□□□□□ -0.28
TCOF1-204ENST00000427724 DISP1Q96F81 1524 aa13.31□□□□□ -0.28
TCOF1-204ENST00000427724 PRKAR2BP31323 418 aa13.31□□□□□ -0.28
TCOF1-204ENST00000427724 VPS37DQ86XT2 251 aa13.31□□□□□ -0.28
TCOF1-204ENST00000427724 FKBP5Q13451 457 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-204ENST00000427724 ATAD2Q6PL18 1390 aa13.3□□□□□ -0.28
TCOF1-204ENST00000427724 GAS2L2Q8NHY3 880 aa13.3□□□□□ -0.28
TCOF1-204ENST00000427724 ROCK1Q13464 1354 aa13.3□□□□□ -0.28
TCOF1-204ENST00000427724 SPRYD3Q8NCJ5 442 aa13.3□□□□□ -0.28
TCOF1-204ENST00000427724 BRD4O60885 1362 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-204ENST00000427724 RIMS2Q9UQ26 1411 aa13.29□□□□□ -0.28
TCOF1-204ENST00000427724 SLKQ9H2G2 1235 aaPredicted RBP13.29□□□□□ -0.28
TCOF1-204ENST00000427724 TBX22Q9Y458 520 aa13.29□□□□□ -0.28
TCOF1-204ENST00000427724 ACEP12821 1306 aa13.28□□□□□ -0.28
TCOF1-204ENST00000427724 DDX17Q92841 729 aaKnown RBP13.28□□□□□ -0.28
TCOF1-204ENST00000427724 ORAI2Q96SN7 254 aa13.28□□□□□ -0.28
TCOF1-204ENST00000427724 TSPOAP1O95153 1857 aa13.28□□□□□ -0.28
TCOF1-204ENST00000427724 YEATS2Q9ULM3 1422 aa13.28□□□□□ -0.28
TCOF1-204ENST00000427724 ACSBG1Q96GR2 724 aa13.27□□□□□ -0.29
TCOF1-204ENST00000427724 WWC3Q9ULE0 1092 aa13.27□□□□□ -0.29
TCOF1-204ENST00000427724 ADAMTS8Q9UP79 889 aa13.27□□□□□ -0.29
TCOF1-204ENST00000427724 C14orf93Q9H972 538 aaKnown RBP13.27□□□□□ -0.29
TCOF1-204ENST00000427724 TMOD3Q9NYL9 352 aa13.26□□□□□ -0.29
TCOF1-204ENST00000427724 RSPH6AQ9H0K4 717 aa13.26□□□□□ -0.29
TCOF1-204ENST00000427724 HSP90AB1P08238 724 aaKnown RBP13.25□□□□□ -0.29
TCOF1-204ENST00000427724 GZF1Q9H116 711 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-204ENST00000427724 TOMM22Q9NS69 142 aa13.25□□□□□ -0.29
TCOF1-204ENST00000427724 RPRD2Q5VT52 1461 aaKnown RBP13.25□□□□□ -0.29
TCOF1-204ENST00000427724 CENPQQ7L2Z9 268 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms