RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 LTKP29376 864 aa35.75■■■■□ 3.31
LDB1-202ENST00000425280 NSD3Q9BZ95 1437 aa35.75■■■■□ 3.31
LDB1-202ENST00000425280 RIMS1Q86UR5 1692 aaKnown RBP35.74■■■■□ 3.31
LDB1-202ENST00000425280 PLEKHG1Q9ULL1 1385 aa35.74■■■■□ 3.31
LDB1-202ENST00000425280 SLIT1O75093 1534 aa35.73■■■■□ 3.31
LDB1-202ENST00000425280 BCANQ96GW7 911 aa35.73■■■■□ 3.31
LDB1-202ENST00000425280 SRPK2P78362 688 aaKnown RBP35.72■■■■□ 3.31
LDB1-202ENST00000425280 ARHGAP23Q9P227 1491 aa35.72■■■■□ 3.31
LDB1-202ENST00000425280 ADAMTS13Q76LX8 1427 aa35.72■■■■□ 3.31
LDB1-202ENST00000425280 PLEKHH1Q9ULM0 1364 aa35.72■■■■□ 3.31
LDB1-202ENST00000425280 KNDC1Q76NI1 1749 aa35.72■■■■□ 3.31
LDB1-202ENST00000425280 WAPLQ7Z5K2 1190 aa35.71■■■■□ 3.31
LDB1-202ENST00000425280 ANKRD36BQ8N2N9 1353 aa35.7■■■■□ 3.31
LDB1-202ENST00000425280 TXNDC2Q86VQ3 553 aa35.7■■■■□ 3.31
LDB1-202ENST00000425280 USP32Q8NFA0 1604 aa35.69■■■■□ 3.3
LDB1-202ENST00000425280 NINLQ9Y2I6 1382 aa35.69■■■■□ 3.3
LDB1-202ENST00000425280 ATAD2Q6PL18 1390 aa35.68■■■■□ 3.3
LDB1-202ENST00000425280 TECPR2O15040 1411 aa35.68■■■■□ 3.3
LDB1-202ENST00000425280 EID1Q9Y6B2 187 aa35.67■■■■□ 3.3
LDB1-202ENST00000425280 ADAMTSL3P82987 1691 aa35.67■■■■□ 3.3
LDB1-202ENST00000425280 CDK19Q9BWU1 502 aa35.66■■■■□ 3.3
LDB1-202ENST00000425280 THEMISQ8N1K5 641 aaPredicted RBP35.64■■■■□ 3.3
LDB1-202ENST00000425280 CPS1P31327 1500 aa35.64■■■■□ 3.3
LDB1-202ENST00000425280 SIRT1Q96EB6 747 aa35.63■■■■□ 3.29
LDB1-202ENST00000425280 FAM135BQ49AJ0 1406 aa35.63■■■■□ 3.29
LDB1-202ENST00000425280 MED14O60244 1454 aa35.62■■■■□ 3.29
LDB1-202ENST00000425280 INSRP06213 1382 aa35.6■■■■□ 3.29
LDB1-202ENST00000425280 CEP170BQ9Y4F5 1589 aaPredicted RBP35.59■■■■□ 3.29
LDB1-202ENST00000425280 CGNL1Q0VF96 1302 aa35.58■■■■□ 3.29
LDB1-202ENST00000425280 A0A1W2PP64 1363 aa35.58■■■■□ 3.29
LDB1-202ENST00000425280 CD163L1Q9NR16 1453 aa35.55■■■■□ 3.28
LDB1-202ENST00000425280 BLMP54132 1417 aaPredicted RBP35.54■■■■□ 3.28
LDB1-202ENST00000425280 SENP3-EIF4A1A0A087X0R7 540 aa35.53■■■■□ 3.28
LDB1-202ENST00000425280 MORC1Q86VD1 984 aa35.53■■■■□ 3.28
LDB1-202ENST00000425280 SLC26A8Q96RN1 970 aa35.53■■■■□ 3.28
LDB1-202ENST00000425280 ROBO2Q9HCK4 1378 aa35.53■■■■□ 3.28
LDB1-202ENST00000425280 SUPT16HQ9Y5B9 1047 aaKnown RBP35.52■■■■□ 3.28
LDB1-202ENST00000425280 TERF2IPQ9NYB0 399 aa35.52■■■■□ 3.28
LDB1-202ENST00000425280 NSD2O96028 1365 aa35.51■■■■□ 3.27
LDB1-202ENST00000425280 WASLO00401 505 aaPredicted RBP35.5■■■■□ 3.27
LDB1-202ENST00000425280 PTPRUQ92729 1446 aa35.49■■■■□ 3.27
LDB1-202ENST00000425280 TBX22Q9Y458 520 aa35.48■■■■□ 3.27
LDB1-202ENST00000425280 CABP1Q9NZU7 370 aa35.48■■■■□ 3.27
LDB1-202ENST00000425280 ADAMTS8Q9UP79 889 aa35.47■■■■□ 3.27
LDB1-202ENST00000425280 DIP2AQ14689 1571 aa35.47■■■■□ 3.27
LDB1-202ENST00000425280 ZNF142P52746 1687 aaPredicted RBP35.46■■■■□ 3.27
LDB1-202ENST00000425280 WDR43Q15061 677 aaKnown RBP eCLIP35.45■■■■□ 3.278e-9■■□□□ 13.6
LDB1-202ENST00000425280 SMG6Q86US8 1419 aaKnown RBP35.44■■■■□ 3.26
LDB1-202ENST00000425280 HDGFL2Q7Z4V5 671 aaPredicted RBP35.44■■■■□ 3.26
LDB1-202ENST00000425280 ATP7BP35670 1465 aa35.42■■■■□ 3.26
LDB1-202ENST00000425280 FKBP8Q14318 412 aa35.41■■■■□ 3.26
LDB1-202ENST00000425280 SIPA1L2Q9P2F8 1722 aaPredicted RBP35.41■■■■□ 3.26
LDB1-202ENST00000425280 POLR3AO14802 1390 aaPredicted RBP35.41■■■■□ 3.26
LDB1-202ENST00000425280 NEFLP07196 543 aa35.41■■■■□ 3.26
LDB1-202ENST00000425280 TNNT2P45379 298 aaPredicted RBP35.41■■■■□ 3.26
LDB1-202ENST00000425280 ADGRB2O60241 1585 aa35.4■■■■□ 3.26
LDB1-202ENST00000425280 SETD1BQ9UPS6 1966 aaKnown RBP35.39■■■■□ 3.26
LDB1-202ENST00000425280 AMOTL2Q9Y2J4 779 aa35.38■■■■□ 3.25
LDB1-202ENST00000425280 NUDCQ9Y266 331 aa35.37■■■■□ 3.25
LDB1-202ENST00000425280 ANKRD26Q9UPS8 1709 aa35.36■■■■□ 3.25
LDB1-202ENST00000425280 PPIP5K1Q6PFW1 1433 aa35.36■■■■□ 3.25
LDB1-202ENST00000425280 NUDT16Q96DE0 195 aaKnown RBP35.36■■■■□ 3.25
LDB1-202ENST00000425280 PTCH1Q13635 1447 aa35.34■■■■□ 3.25
LDB1-202ENST00000425280 FYB1O15117 783 aa35.34■■■■□ 3.25
LDB1-202ENST00000425280 SALL2Q9Y467 1007 aaPredicted RBP35.34■■■■□ 3.25
LDB1-202ENST00000425280 GGNBP2Q9H3C7 697 aa35.33■■■■□ 3.25
LDB1-202ENST00000425280 CPSF1Q10570 1443 aaKnown RBP35.32■■■■□ 3.24
LDB1-202ENST00000425280 KIF20BQ96Q89 1820 aa35.31■■■■□ 3.24
LDB1-202ENST00000425280 XRN1Q8IZH2 1706 aaKnown RBP35.31■■■■□ 3.24
LDB1-202ENST00000425280 ANKLE2Q86XL3 938 aa35.3■■■■□ 3.24
LDB1-202ENST00000425280 CCDC61Q9Y6R9 512 aa35.3■■■■□ 3.24
LDB1-202ENST00000425280 MTHFSP49914 203 aa35.29■■■■□ 3.24
LDB1-202ENST00000425280 PRR36Q9H6K5 1346 aa35.29■■■■□ 3.24
LDB1-202ENST00000425280 CDC42BPGQ6DT37 1551 aa35.29■■■■□ 3.24
LDB1-202ENST00000425280 SHPRHQ149N8 1683 aa35.28■■■■□ 3.24
LDB1-202ENST00000425280 NCKAP5LQ9HCH0 1330 aa35.28■■■■□ 3.24
LDB1-202ENST00000425280 PDE3BQ13370 1112 aa35.26■■■■□ 3.24
LDB1-202ENST00000425280 PIK3R4Q99570 1358 aa35.26■■■■□ 3.23
LDB1-202ENST00000425280 EDC4Q6P2E9 1401 aaKnown RBP35.23■■■■□ 3.23
LDB1-202ENST00000425280 AKAP12Q02952 1782 aa35.21■■■■□ 3.23
LDB1-202ENST00000425280 MON2Q7Z3U7 1717 aa35.21■■■■□ 3.23
LDB1-202ENST00000425280 TOPAZ1Q8N9V7 1692 aa35.21■■■■□ 3.23
LDB1-202ENST00000425280 SUGP2Q8IX01 1082 aaKnown RBP eCLIP35.21■■■■□ 3.23
LDB1-202ENST00000425280 CFAP53Q96M91 514 aa35.21■■■■□ 3.23
LDB1-202ENST00000425280 ITSN1Q15811 1721 aa35.2■■■■□ 3.23
LDB1-202ENST00000425280 CCDC146Q8IYE0 955 aa35.2■■■■□ 3.22
LDB1-202ENST00000425280 KCNA6P17658 529 aa35.17■■■■□ 3.22
LDB1-202ENST00000425280 CDCA7LQ96GN5 454 aa35.15■■■■□ 3.22
LDB1-202ENST00000425280 CHD2O14647 1828 aaKnown RBP35.14■■■■□ 3.22
LDB1-202ENST00000425280 IRX6P78412 446 aaPredicted RBP35.13■■■■□ 3.21
LDB1-202ENST00000425280 ZNF692Q9BU19 519 aaPredicted RBP35.13■■■■□ 3.21
LDB1-202ENST00000425280 NUTM2FA1L443 756 aa35.12■■■■□ 3.21
LDB1-202ENST00000425280 PLEKHG3A1L390 1219 aa35.11■■■■□ 3.21
LDB1-202ENST00000425280 APAF1O14727 1248 aa35.1■■■■□ 3.21
LDB1-202ENST00000425280 ZNF521Q96K83 1311 aa35.1■■■■□ 3.21
LDB1-202ENST00000425280 NKTRP30414 1462 aaKnown RBP35.09■■■■□ 3.21
LDB1-202ENST00000425280 COL3A1P02461 1466 aaPredicted RBP35.09■■■■□ 3.21
LDB1-202ENST00000425280 NPHP4O75161 1426 aaPredicted RBP35.09■■■■□ 3.21
LDB1-202ENST00000425280 NME9Q86XW9 330 aa35.09■■■■□ 3.21
LDB1-202ENST00000425280 RNF123Q5XPI4 1314 aa35.07■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms