RNA–Protein interactions for RNA: ENST00000409076.6

SNX13-201, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 3,818 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-201ENST00000409076 CCDC141Q6ZP82 1450 aa10.45□□□□□ -0.74
SNX13-201ENST00000409076 FAM83GA6ND36 823 aa10.45□□□□□ -0.74
SNX13-201ENST00000409076 TRIM27P14373 513 aa10.45□□□□□ -0.74
SNX13-201ENST00000409076 SYNJ2O15056 1496 aa10.45□□□□□ -0.74
SNX13-201ENST00000409076 SMARCA5O60264 1052 aaPredicted RBP10.45□□□□□ -0.74
SNX13-201ENST00000409076 PRKAR2BP31323 418 aa10.45□□□□□ -0.74
SNX13-201ENST00000409076 LTV1Q96GA3 475 aaPredicted RBP10.45□□□□□ -0.74
SNX13-201ENST00000409076 RRS1Q15050 365 aaKnown RBP10.44□□□□□ -0.74
SNX13-201ENST00000409076 RNF214Q8ND24 703 aa10.44□□□□□ -0.74
SNX13-201ENST00000409076 ZRANB1Q9UGI0 708 aa10.44□□□□□ -0.74
SNX13-201ENST00000409076 NKTRP30414 1462 aaKnown RBP10.44□□□□□ -0.74
SNX13-201ENST00000409076 RBM10P98175 930 aaKnown RBP10.44□□□□□ -0.74
SNX13-201ENST00000409076 KRT24Q2M2I5 525 aa10.44□□□□□ -0.74
SNX13-201ENST00000409076 ANP32BQ92688 251 aaKnown RBP10.44□□□□□ -0.74
SNX13-201ENST00000409076 PBRM1Q86U86 1689 aa10.44□□□□□ -0.74
SNX13-201ENST00000409076 EIF3AQ14152 1382 aaKnown RBP10.43□□□□□ -0.74
SNX13-201ENST00000409076 MCM4P33991 863 aa10.43□□□□□ -0.74
SNX13-201ENST00000409076 MVPQ14764 893 aaKnown RBP10.43□□□□□ -0.74
SNX13-201ENST00000409076 L1TD1Q5T7N2 865 aaKnown RBP10.43□□□□□ -0.74
SNX13-201ENST00000409076 NUTM2GQ5VZR2 741 aa10.43□□□□□ -0.74
SNX13-201ENST00000409076 NCKAP5LQ9HCH0 1330 aa10.43□□□□□ -0.74
SNX13-201ENST00000409076 XRCC6P12956 609 aaKnown RBP eCLIP10.43□□□□□ -0.74
SNX13-201ENST00000409076 DDX49Q9Y6V7 483 aaKnown RBP10.43□□□□□ -0.74
SNX13-201ENST00000409076 LARP6Q9BRS8 491 aaKnown RBP10.43□□□□□ -0.74
SNX13-201ENST00000409076 TRAPPC8Q9Y2L5 1435 aa10.43□□□□□ -0.74
SNX13-201ENST00000409076 MCTP1Q6DN14 999 aa10.42□□□□□ -0.74
SNX13-201ENST00000409076 WAPLQ7Z5K2 1190 aa10.42□□□□□ -0.74
SNX13-201ENST00000409076 PRAM1Q96QH2 718 aa10.42□□□□□ -0.74
SNX13-201ENST00000409076 GPRASP1Q5JY77 1395 aa10.42□□□□□ -0.74
SNX13-201ENST00000409076 IFT140Q96RY7 1462 aa10.42□□□□□ -0.74
SNX13-201ENST00000409076 RSPH4AQ5TD94 716 aa10.42□□□□□ -0.74
SNX13-201ENST00000409076 CABP1Q9NZU7 370 aa10.42□□□□□ -0.74
SNX13-201ENST00000409076 COL17A1Q9UMD9 1497 aaPredicted RBP10.42□□□□□ -0.74
SNX13-201ENST00000409076 PDE3AQ14432 1141 aa10.41□□□□□ -0.74
SNX13-201ENST00000409076 C16orf71Q8IYS4 520 aaPredicted RBP10.41□□□□□ -0.74
SNX13-201ENST00000409076 MBD5Q9P267 1494 aa10.41□□□□□ -0.74
SNX13-201ENST00000409076 SSFA2P28290 1259 aa10.41□□□□□ -0.74
SNX13-201ENST00000409076 UGGT1Q9NYU2 1555 aa10.41□□□□□ -0.74
SNX13-201ENST00000409076 PLA2R1Q13018 1463 aa10.4□□□□□ -0.74
SNX13-201ENST00000409076 TARBP1Q13395 1621 aaKnown RBP10.4□□□□□ -0.74
SNX13-201ENST00000409076 PTMAP06454 111 aaKnown RBP10.4□□□□□ -0.74
SNX13-201ENST00000409076 TSPYL6Q8N831 410 aa10.4□□□□□ -0.74
SNX13-201ENST00000409076 CHMP5Q9NZZ3 219 aa10.4□□□□□ -0.74
SNX13-201ENST00000409076 USP19O94966 1318 aa10.4□□□□□ -0.74
SNX13-201ENST00000409076 DIAPH1O60610 1272 aaKnown RBP10.4□□□□□ -0.74
SNX13-201ENST00000409076 DNTTIP2Q5QJE6 756 aaKnown RBP10.4□□□□□ -0.74
SNX13-201ENST00000409076 TMPOP42166 694 aaKnown RBP10.4□□□□□ -0.75
SNX13-201ENST00000409076 CHMP3Q9Y3E7 222 aa10.4□□□□□ -0.75
SNX13-201ENST00000409076 EMILIN1Q9Y6C2 1016 aa10.4□□□□□ -0.75
SNX13-201ENST00000409076 MAP4K4O95819 1239 aaPredicted RBP10.39□□□□□ -0.75
SNX13-201ENST00000409076 CAVIN1Q6NZI2 390 aaKnown RBP10.39□□□□□ -0.75
SNX13-201ENST00000409076 ATF7IPQ6VMQ6 1270 aa10.39□□□□□ -0.75
SNX13-201ENST00000409076 RILPL2Q969X0 211 aa10.39□□□□□ -0.75
SNX13-201ENST00000409076 TBC1D32Q96NH3 1257 aa10.39□□□□□ -0.75
SNX13-201ENST00000409076 NOS1P29475 1434 aa10.39□□□□□ -0.75
SNX13-201ENST00000409076 UHRF1BP1Q6BDS2 1440 aa10.39□□□□□ -0.75
SNX13-201ENST00000409076 TRIM6-TRIM34B2RNG4 842 aa10.39□□□□□ -0.75
SNX13-201ENST00000409076 DDX54Q8TDD1 881 aaKnown RBP10.39□□□□□ -0.75
SNX13-201ENST00000409076 UBE2Q2Q8WVN8 375 aa10.39□□□□□ -0.75
SNX13-201ENST00000409076 CCDC9Q9Y3X0 531 aaKnown RBP10.39□□□□□ -0.75
SNX13-201ENST00000409076 FBXO31Q5XUX0 539 aaPredicted RBP10.38□□□□□ -0.75
SNX13-201ENST00000409076 DDX19BQ9UMR2 479 aa10.38□□□□□ -0.75
SNX13-201ENST00000409076 ZMYM4Q5VZL5 1548 aa10.38□□□□□ -0.75
SNX13-201ENST00000409076 GOLGA6L22H0YM25 854 aa10.37□□□□□ -0.75
SNX13-201ENST00000409076 CD2BP2O95400 341 aaKnown RBP10.37□□□□□ -0.75
SNX13-201ENST00000409076 LMOD2Q6P5Q4 547 aa10.37□□□□□ -0.75
SNX13-201ENST00000409076 TNPO1Q92973 898 aaKnown RBP10.37□□□□□ -0.75
SNX13-201ENST00000409076 RBM27Q9P2N5 1060 aaKnown RBP10.37□□□□□ -0.75
SNX13-201ENST00000409076 EVC2Q86UK5 1308 aa10.37□□□□□ -0.75
SNX13-201ENST00000409076 BLMP54132 1417 aaPredicted RBP10.37□□□□□ -0.75
SNX13-201ENST00000409076 HDGFL2Q7Z4V5 671 aaPredicted RBP10.37□□□□□ -0.75
SNX13-201ENST00000409076 OTUD7AQ8TE49 926 aaPredicted RBP10.37□□□□□ -0.75
SNX13-201ENST00000409076 CEP170Q5SW79 1584 aa10.37□□□□□ -0.75
SNX13-201ENST00000409076 EIF4G3O43432 1585 aaKnown RBP10.36□□□□□ -0.75
SNX13-201ENST00000409076 IPO8O15397 1037 aaKnown RBP10.36□□□□□ -0.75
SNX13-201ENST00000409076 HSP90AA2PQ14568 343 aaPredicted RBP10.36□□□□□ -0.75
SNX13-201ENST00000409076 FAM13BQ9NYF5 915 aa10.36□□□□□ -0.75
SNX13-201ENST00000409076 MCM10Q7L590 875 aa10.36□□□□□ -0.75
SNX13-201ENST00000409076 PHACTR3Q96KR7 559 aa10.36□□□□□ -0.75
SNX13-201ENST00000409076 GRPEL1Q9HAV7 217 aa10.36□□□□□ -0.75
SNX13-201ENST00000409076 GDPD2Q9HCC8 539 aa10.36□□□□□ -0.75
SNX13-201ENST00000409076 F6X3S4 739 aa10.36□□□□□ -0.75
SNX13-201ENST00000409076 ESF1Q9H501 851 aaKnown RBP10.36□□□□□ -0.75
SNX13-201ENST00000409076 GBP4Q96PP9 640 aa10.35□□□□□ -0.75
SNX13-201ENST00000409076 ZNF521Q96K83 1311 aa10.35□□□□□ -0.75
SNX13-201ENST00000409076 PRPF40AO75400 957 aaKnown RBP10.35□□□□□ -0.75
SNX13-201ENST00000409076 TXNDC2Q86VQ3 553 aa10.35□□□□□ -0.75
SNX13-201ENST00000409076 CHD1LQ86WJ1 897 aa10.35□□□□□ -0.75
SNX13-201ENST00000409076 NME9Q86XW9 330 aa10.35□□□□□ -0.75
SNX13-201ENST00000409076 FAM43AQ8N2R8 423 aa10.35□□□□□ -0.75
SNX13-201ENST00000409076 RBM33Q96EV2 1170 aaKnown RBP10.35□□□□□ -0.75
SNX13-201ENST00000409076 MSNP26038 577 aaKnown RBP10.34□□□□□ -0.75
SNX13-201ENST00000409076 RSPH6AQ9H0K4 717 aa10.34□□□□□ -0.75
SNX13-201ENST00000409076 ASXL1Q8IXJ9 1541 aa10.34□□□□□ -0.75
SNX13-201ENST00000409076 SCAF11Q99590 1463 aaKnown RBP10.34□□□□□ -0.75
SNX13-201ENST00000409076 CDK19Q9BWU1 502 aa10.33□□□□□ -0.76
SNX13-201ENST00000409076 TERF2IPQ9NYB0 399 aa10.33□□□□□ -0.76
SNX13-201ENST00000409076 R3HCC1Q9Y3T6 440 aaKnown RBP10.33□□□□□ -0.76
SNX13-201ENST00000409076 WDR7Q9Y4E6 1490 aa10.33□□□□□ -0.76
SNX13-201ENST00000409076 ITSN2Q9NZM3 1697 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms